Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 6.3e-106 387.5 203 100.0
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 5.4e-81 304.7 176 92.0
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 5.4e-73 278.1 176 81.8
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 5.4e-73 278.1 171 83.0
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 7.1e-73 277.7 171 83.6
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 7.1e-73 277.7 176 81.8
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 2.7e-72 275.8 171 83.0
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 3.5e-72 275.4 171 82.5
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 3.5e-72 275.4 171 82.5
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 1.3e-71 273.5 171 81.3
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 1.7e-71 273.1 171 81.3
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 1.7e-71 273.1 171 81.9
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 5.1e-71 271.6 175 80.0
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 5.1e-71 271.6 171 80.7
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 6.6e-71 271.2 169 81.7
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 6.6e-71 271.2 171 81.9
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 6.6e-71 271.2 179 78.2
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 1.1e-70 270.4 171 81.3
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 1.1e-70 270.4 176 80.7
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 1.5e-70 270.0 179 79.9
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 1.9e-70 269.6 176 80.1
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 3.3e-70 268.9 169 81.1
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 5.6e-70 268.1 176 80.1
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 5.6e-70 268.1 169 81.7
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 5.6e-70 268.1 171 80.7
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 5.6e-70 268.1 176 79.5
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 7.3e-70 267.7 177 76.8
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 7.3e-70 267.7 171 80.7
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 9.5e-70 267.3 168 81.0
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 1.2e-69 266.9 176 77.8
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 2.1e-69 266.2 170 81.8
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 2.1e-69 266.2 171 80.1
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 2.8e-69 265.8 176 77.8
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 3.6e-69 265.4 184 75.5
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 6.2e-69 264.6 166 82.5
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 1.8e-68 263.1 180 76.7
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 1.8e-68 263.1 171 78.4
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 5.2e-68 261.5 160 80.6
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 6.8e-68 261.2 174 77.6
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 6.8e-68 261.2 171 77.8
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 1.2e-67 260.4 171 79.5
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.5e-67 260.0 180 75.6
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 2.0e-67 259.6 176 76.1
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 2.6e-67 259.2 180 75.6
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 2.6e-67 259.2 153 84.3
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 2.6e-67 259.2 177 76.8
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 3.4e-67 258.8 182 72.0
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 3.4e-67 258.8 182 72.0
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 5.8e-67 258.1 159 83.0
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 5.8e-67 258.1 182 75.8
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 7.6e-67 257.7 180 75.0
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.3e-66 256.9 164 80.5
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.3e-66 256.9 155 83.9
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 1.7e-66 256.5 171 78.4
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 2.9e-66 255.8 172 76.7
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 6.4e-66 254.6 183 70.5
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 6.4e-66 254.6 178 73.6
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 6.4e-66 254.6 165 78.8
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 6.4e-66 254.6 165 78.8
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 1.4e-65 253.4 157 80.9
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.4e-65 253.4 164 79.9
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.9e-65 253.1 164 78.7
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 3.2e-65 252.3 192 69.8
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 3.2e-65 252.3 154 81.8
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 5.4e-65 251.5 212 64.6
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 9.2e-65 250.8 172 75.0
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 1.2e-64 250.4 159 77.4
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 2.1e-64 249.6 174 73.6
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 2.1e-64 249.6 172 74.4
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 2.1e-64 249.6 175 72.6
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 2.7e-64 249.2 172 74.4
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 3.5e-64 248.8 174 73.6
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 3.5e-64 248.8 179 74.9
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 3.5e-64 248.8 160 76.9
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 3.5e-64 248.8 168 76.8
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 4.6e-64 248.4 176 71.0
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 6.0e-64 248.1 175 73.1
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 6.0e-64 248.1 172 76.2
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 7.8e-64 247.7 176 73.9
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 7.8e-64 247.7 172 75.0
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 1.7e-63 246.5 172 75.0
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 2.3e-63 246.1 174 73.0
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 2.3e-63 246.1 157 76.4
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 2.3e-63 246.1 154 80.5
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 3.0e-63 245.7 157 76.4
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 5.1e-63 245.0 174 73.0
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 5.1e-63 245.0 157 78.3
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 5.1e-63 245.0 157 79.0
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 5.1e-63 245.0 172 73.8
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 1.1e-62 243.8 174 73.0
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 1.5e-62 243.4 175 69.1
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 1.5e-62 243.4 178 71.3
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.5e-62 243.4 172 76.2
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.9e-62 243.0 163 75.5
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 1.9e-62 243.0 187 67.4
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 3.3e-62 242.3 175 69.7
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 4.3e-62 241.9 183 68.3
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 4.3e-62 241.9 175 73.7
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 4.3e-62 241.9 154 81.8
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 5.6e-62 241.5 175 72.0
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 9.6e-62 240.7 172 73.3
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 1.6e-61 240.0 175 70.9
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 4.7e-61 238.4 165 77.0
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 4.7e-61 238.4 155 76.1
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 8.1e-61 237.7 149 80.5
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 8.1e-61 237.7 154 78.6
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 2.4e-60 236.1 172 73.3
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 1.5e-59 233.4 157 73.2
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 2.6e-59 232.6 157 73.2
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 2.6e-59 232.6 179 70.9
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 3.4e-59 232.3 154 76.0
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 2.2e-58 229.6 175 70.3
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 2.9e-58 229.2 185 65.9
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 9.3e-57 224.2 183 65.0
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 1.2e-56 223.8 151 76.8
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 1.2e-56 223.8 152 75.7
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 2.1e-56 223.0 173 67.6
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 6.0e-56 221.5 233 55.4
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 1.0e-55 220.7 154 74.0
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 1.0e-55 220.7 171 67.3
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 3.3e-54 215.7 151 72.8
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 2.1e-53 213.0 175 66.9
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 3.6e-53 212.2 175 65.7
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 1.4e-52 210.3 178 67.4
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 3.1e-52 209.1 159 67.9
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 4.4e-51 205.3 152 69.7
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 6.0e-48 194.9 147 68.7
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 6.6e-47 191.4 154 63.6
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 1.1e-46 190.7 172 63.4
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 1.5e-46 190.3 172 63.4
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 2.5e-46 189.5 209 55.0
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 3.6e-45 185.7 149 68.5
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 4.0e-44 182.2 126 74.6
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.3e-42 177.2 157 61.8
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 4.9e-42 175.3 107 78.5
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 1.1e-41 174.1 131 68.7
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 5.1e-39 165.2 147 61.9
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 5.1e-39 165.2 102 76.5
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 7.4e-38 161.4 176 54.5
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 9.6e-38 161.0 165 50.9
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 3.7e-37 159.1 142 53.5
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 8.1e-37 157.9 130 64.6
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.4e-36 157.1 130 65.4
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.8e-36 156.8 130 64.6
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.4e-36 156.4 129 61.2
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.5e-35 153.7 130 65.4
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 4.9e-34 148.7 95 73.7
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 9.3e-33 144.4 82 82.9
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 1.3e-31 140.6 154 48.1
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 6.7e-31 138.3 106 60.4
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 7.4e-30 134.8 147 44.9
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 9.6e-30 134.4 104 65.4
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 1.6e-29 133.7 140 45.0
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 4.2e-25 119.0 190 42.6
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 2.7e-24 116.3 89 68.5
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 1.3e-18 97.4 86 64.0
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 8.8e-15 84.7 58 67.2
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 4.5e-11 72.4 68 63.2
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 2.2e-10 70.1 160 38.1
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 6.5e-10 68.6 103 47.6
SpUn0008_0090 Schrenkiella parvula HOM05D000004 ORTHO05D027095 7.4e-06 55.1 43 62.8


User provided reference genes

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