Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 6.5e-179 630.6 308 100.0
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 8.0e-145 517.3 294 87.4
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 7.3e-122 441.0 300 73.3
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 1.7e-118 429.9 296 72.6
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 2.2e-118 429.5 291 73.9
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 2.9e-118 429.1 292 72.6
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 6.4e-118 427.9 292 72.3
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 6.4e-118 427.9 286 74.5
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 1.9e-117 426.4 292 73.6
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 3.5e-116 422.2 289 72.7
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 6.0e-116 421.4 289 73.0
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 1.3e-115 420.2 291 71.8
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 1.7e-115 419.9 292 73.3
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 2.3e-115 419.5 291 71.8
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.9e-114 416.4 291 71.5
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 4.3e-114 415.2 296 69.6
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 5.6e-114 414.8 292 73.3
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 4.0e-112 408.7 283 70.7
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 6.9e-112 407.9 299 68.9
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 2.0e-111 406.4 295 66.4
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 2.6e-111 406.0 287 71.4
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 4.4e-111 405.2 293 68.6
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 4.4e-111 405.2 287 70.7
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 1.7e-110 403.3 290 69.0
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 2.2e-110 402.9 292 66.4
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 3.8e-110 402.1 275 70.5
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 5.4e-109 398.3 277 70.0
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 7.1e-109 397.9 298 68.1
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 9.3e-109 397.5 285 69.5
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 1.2e-108 397.1 287 69.7
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 1.6e-108 396.7 285 68.4
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 2.7e-108 396.0 291 67.7
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 3.5e-108 395.6 283 67.1
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 7.8e-108 394.4 290 67.2
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 1.0e-107 394.0 285 68.4
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 1.0e-107 394.0 282 69.1
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.3e-107 393.7 285 67.7
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 6.6e-107 391.3 290 67.6
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 1.1e-106 390.6 292 64.7
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 1.5e-106 390.2 271 70.5
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 1.5e-106 390.2 298 67.4
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 1.5e-106 390.2 271 68.3
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 1.9e-106 389.8 282 66.7
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 1.9e-106 389.8 280 65.7
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 5.6e-106 388.3 286 65.4
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 9.6e-106 387.5 282 68.4
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 6.2e-105 384.8 280 67.5
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 1.1e-104 384.0 291 67.0
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 1.4e-104 383.6 291 66.7
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 1.4e-104 383.6 285 67.0
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 1.8e-104 383.3 271 66.8
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 2.4e-104 382.9 247 73.7
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 3.1e-104 382.5 288 66.0
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 3.1e-104 382.5 292 63.4
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 5.3e-104 381.7 285 66.0
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 3.4e-103 379.0 291 64.6
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 3.4e-103 379.0 281 67.6
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 5.8e-103 378.3 271 66.1
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 7.6e-103 377.9 298 61.1
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 9.9e-103 377.5 285 63.9
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 9.9e-103 377.5 271 66.4
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 9.9e-103 377.5 243 74.9
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 9.9e-103 377.5 288 67.4
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 2.2e-102 376.3 298 63.4
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 2.9e-102 375.9 282 64.5
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 6.4e-102 374.8 288 64.2
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 2.4e-101 372.9 285 63.9
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 5.4e-101 371.7 276 66.3
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 9.3e-101 370.9 287 63.4
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 1.2e-100 370.5 290 64.1
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 2.1e-100 369.8 289 64.7
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 2.7e-100 369.4 291 64.9
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 7.9e-100 367.9 267 64.4
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 1.0e-99 367.5 288 65.3
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 6.7e-99 364.8 276 65.6
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 1.1e-98 364.0 227 77.5
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 5.6e-98 361.7 269 63.9
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 7.4e-98 361.3 259 66.0
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 1.6e-97 360.1 288 60.8
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 2.8e-97 359.4 311 58.5
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 5.8e-95 351.7 292 61.0
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 8.4e-94 347.8 247 69.2
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 1.3e-91 340.5 264 62.5
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 1.1e-90 337.4 293 57.0
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 3.3e-90 335.9 276 61.6
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 6.2e-89 331.6 278 55.8
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 1.4e-88 330.5 271 59.4
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 1.8e-88 330.1 292 58.2
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 7.1e-85 318.2 271 56.8
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 1.8e-83 313.5 270 56.3
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 4.5e-79 298.9 238 63.0
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 2.1e-76 290.0 284 53.2
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 4.6e-76 288.9 247 55.1
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 3.0e-75 286.2 262 57.3
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 6.7e-75 285.0 287 52.3
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 2.0e-74 283.5 287 50.9
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 1.7e-73 280.4 287 50.2
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 1.7e-73 280.4 296 47.3
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 2.4e-72 276.6 290 50.7
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 4.1e-72 275.8 297 51.5
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 5.3e-72 275.4 288 50.3
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 6.9e-72 275.0 271 51.7
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 9.1e-72 274.6 271 51.3
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 2.0e-71 273.5 287 49.8
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 2.0e-71 273.5 287 49.8
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 3.4e-71 272.7 288 50.3
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 5.9e-71 271.9 292 50.0
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 5.9e-71 271.9 283 49.1
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 2.9e-70 269.6 294 49.7
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 3.8e-70 269.2 295 49.8
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 9.4e-69 264.6 271 55.7
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 2.1e-68 263.5 282 48.9
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 2.3e-67 260.0 274 49.6
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 1.7e-65 253.8 287 48.8
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 7.2e-61 238.4 277 45.5
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.6e-52 210.7 245 44.1
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.2e-50 204.5 198 51.5
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 3.3e-50 203.0 291 39.2
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 1.1e-48 198.0 235 45.5
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 6.5e-46 188.7 273 37.0
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 2.1e-44 183.7 222 44.1
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 3.1e-40 169.9 199 44.7
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 4.1e-40 169.5 214 41.1
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 5.4e-40 169.1 204 48.0
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 5.9e-39 165.6 271 40.2
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 1.0e-38 164.9 189 44.4
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 2.9e-38 163.3 199 44.2
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 5.5e-37 159.1 199 44.2
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 5.5e-37 159.1 238 39.9
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 1.2e-36 157.9 199 45.2
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 4.7e-36 156.0 199 44.2
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 2.0e-34 150.6 242 40.1
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 4.9e-33 146.0 270 38.5
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 1.2e-31 141.4 142 47.9
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 2.3e-30 137.1 140 45.0
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 1.1e-29 134.8 152 45.4
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 1.2e-28 131.3 142 47.2
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 2.8e-28 130.2 82 72.0
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 1.5e-26 124.4 199 37.7
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 1.5e-26 124.4 199 37.7
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 1.2e-23 114.8 174 38.5
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 2.7e-23 113.6 186 34.4
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 1.5e-18 97.8 93 52.7
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 7.5e-18 95.5 147 43.5
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 2.2e-17 94.0 66 59.1
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 2.2e-17 94.0 66 59.1
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 7.0e-16 89.0 69 62.3
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 9.5e-13 78.6 70 61.4


User provided reference genes

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