Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 8.8e-173 610.1 297 100.0
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 1.6e-110 403.3 297 65.3
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 8.9e-109 397.5 302 66.9
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 1.3e-107 393.7 297 67.0
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 4.9e-107 391.7 293 67.2
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 1.9e-106 389.8 297 65.7
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 1.2e-105 387.1 298 64.1
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 1.2e-105 387.1 299 63.9
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 3.5e-105 385.6 294 64.6
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 1.3e-104 383.6 293 68.6
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 5.1e-104 381.7 296 63.9
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 1.2e-102 377.1 291 63.9
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 2.1e-102 376.3 291 64.3
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 3.1e-101 372.5 291 63.9
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 9.9e-100 367.5 291 61.9
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 1.7e-99 366.7 299 62.9
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 1.7e-99 366.7 300 63.7
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 2.2e-99 366.3 295 61.4
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 3.8e-99 365.5 291 60.8
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 4.9e-99 365.2 299 63.5
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 1.4e-98 363.6 326 59.2
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 2.4e-98 362.8 291 62.5
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 2.4e-98 362.8 304 61.5
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 5.4e-98 361.7 302 62.6
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 7.1e-98 361.3 320 57.5
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 1.6e-97 360.1 294 61.9
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 2.7e-97 359.4 312 61.5
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 3.5e-97 359.0 293 61.1
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 4.6e-97 358.6 297 61.3
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 1.7e-96 356.7 293 62.1
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 3.0e-96 355.9 289 61.9
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 5.1e-96 355.1 290 62.8
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 1.9e-95 353.2 291 61.5
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 4.3e-95 352.1 289 62.3
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 2.1e-94 349.7 289 62.6
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 3.6e-94 349.0 298 60.4
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 4.8e-94 348.6 301 60.5
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 4.8e-94 348.6 300 59.3
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 6.2e-94 348.2 290 61.7
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 8.1e-94 347.8 297 60.6
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 8.1e-94 347.8 289 60.9
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 1.4e-93 347.1 273 63.7
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 5.3e-93 345.1 295 60.7
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 6.9e-93 344.7 289 61.6
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 9.0e-93 344.4 302 59.6
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 1.2e-92 344.0 289 60.9
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 5.8e-92 341.7 305 59.7
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.9e-91 339.3 294 60.9
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 4.2e-90 335.5 219 73.5
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 5.4e-90 335.1 296 59.8
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 1.6e-89 333.6 295 57.3
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 7.9e-89 331.3 297 56.9
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 7.9e-89 331.3 276 62.3
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 1.8e-88 330.1 293 59.4
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 3.0e-88 329.3 288 57.6
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 5.1e-88 328.6 297 54.5
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 6.7e-88 328.2 297 55.2
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 6.7e-88 328.2 295 54.9
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 2.5e-87 326.2 294 55.8
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 3.3e-87 325.9 297 55.6
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 1.6e-86 323.6 293 57.0
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 1.8e-85 320.1 289 56.4
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 2.4e-85 319.7 301 53.5
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 3.1e-85 319.3 295 56.6
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 1.2e-84 317.4 293 54.9
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 1.5e-84 317.0 291 56.7
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 2.0e-84 316.6 294 56.5
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 4.5e-84 315.5 304 55.3
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 1.3e-83 313.9 294 55.4
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 2.9e-83 312.8 291 55.0
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 2.9e-83 312.8 294 55.4
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 6.4e-83 311.6 311 54.0
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 4.2e-82 308.9 292 53.8
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 7.1e-82 308.1 294 55.4
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 3.5e-81 305.8 298 53.4
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 2.3e-80 303.1 271 58.7
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 1.5e-79 300.4 287 53.7
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 2.5e-79 299.7 295 54.2
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 2.8e-78 296.2 278 57.6
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 1.1e-77 294.3 297 54.2
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 2.4e-77 293.1 292 51.7
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 5.8e-76 288.5 295 53.2
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 1.3e-75 287.3 277 53.8
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 9.7e-71 271.2 284 56.0
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 1.6e-70 270.4 250 58.4
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 8.2e-70 268.1 343 44.6
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 1.2e-68 264.2 304 50.0
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 2.0e-68 263.5 311 47.9
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 7.2e-66 255.0 175 71.4
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 1.8e-64 250.4 176 70.5
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 3.9e-64 249.2 296 47.3
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 3.3e-63 246.1 180 65.6
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 4.3e-63 245.7 277 46.6
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 2.4e-61 240.0 283 48.4
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 9.1e-61 238.0 304 44.1
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.2e-59 233.4 293 44.0
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 3.2e-58 229.6 154 74.7
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 1.5e-55 220.7 282 44.0
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 7.4e-55 218.4 287 47.0
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 5.9e-52 208.8 142 70.4
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 1.6e-49 200.7 118 78.0
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 1.6e-49 200.7 118 78.0
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 2.7e-49 199.9 272 43.8
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 1.0e-48 198.0 295 40.3
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 2.3e-48 196.8 280 40.0
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 1.5e-47 194.1 292 39.7
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 5.7e-47 192.2 300 41.0
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 1.7e-46 190.7 186 54.3
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 1.1e-45 188.0 310 41.0
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 1.1e-45 188.0 224 48.7
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 1.6e-44 184.1 192 53.1
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 4.5e-44 182.6 322 39.4
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 7.7e-44 181.8 107 81.3
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 1.1e-42 177.9 289 38.8
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 7.2e-42 175.3 290 35.9
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 2.7e-41 173.3 326 35.3
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 6.1e-41 172.2 290 38.3
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.5e-39 167.5 290 38.3
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 2.0e-39 167.2 102 75.5
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 7.5e-39 165.2 157 52.2
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.3e-35 154.5 211 44.5
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 1.3e-35 154.5 95 75.8
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.9e-35 153.3 111 61.3
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 5.0e-35 152.5 211 45.0
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 4.7e-33 146.0 122 59.0
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 4.4e-31 139.4 158 45.6
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.3e-27 127.1 146 49.3
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 3.8e-27 126.3 146 49.3
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 8.9e-24 115.2 206 37.9
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.0e-23 114.0 97 55.7
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 3.3e-18 96.7 53 83.0
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 6.1e-17 92.4 50 86.0
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 2.7e-12 77.0 50 70.0
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.3e-11 74.7 118 36.4
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 1.5e-07 61.2 68 47.1
SEGI_05009 Sequoiadendron giganteum HOM05D005869 ORTHO05D007229 4.4e-07 59.7 107 35.5
COL.COLO4_06414 Corchorus olitorius HOM05D005869 ORTHO05D007229 1.3e-06 58.2 71 42.3
Pp3c14_11090 Physcomitrium patens HOM05D005869 ORTHO05D007229 1.3e-06 58.2 113 33.6


User provided reference genes

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