Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 0.0e+00 1076.6 536 100.0
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 1.8e-200 703.0 535 66.5
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 3.7e-198 695.3 534 65.7
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 1.2e-196 690.3 537 65.5
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 2.7e-196 689.1 537 64.2
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 1.2e-188 663.7 535 63.4
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.7e-187 659.8 534 63.1
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 1.7e-187 659.8 534 63.1
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 5.1e-187 658.3 534 62.7
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 3.1e-184 649.0 534 62.7
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 6.9e-184 647.9 534 62.4
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 1.2e-183 647.1 537 60.9
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 1.5e-183 646.7 536 60.3
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 1.7e-182 643.3 537 61.1
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 2.9e-182 642.5 531 62.3
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 1.1e-181 640.6 535 60.2
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 2.3e-179 632.9 537 60.5
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 8.7e-179 630.9 550 60.0
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 8.7e-179 630.9 550 60.0
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 8.7e-179 630.9 537 60.3
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 5.6e-178 628.2 537 60.7
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 5.6e-178 628.2 537 60.0
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 5.6e-178 628.2 534 60.3
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 2.1e-177 626.3 538 59.7
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.6e-177 625.5 559 60.1
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 2.4e-176 622.9 535 59.4
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 5.3e-176 621.7 534 59.7
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 9.9e-175 617.5 534 58.4
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 1.3e-174 617.1 553 59.0
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 2.2e-174 616.3 552 59.2
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 1.1e-173 614.0 535 59.6
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 2.4e-173 612.8 539 59.0
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 6.7e-171 604.7 548 58.6
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 1.3e-169 600.5 534 57.3
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 1.6e-169 600.1 544 56.8
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 2.8e-169 599.4 521 59.5
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 6.9e-168 594.7 535 58.5
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 9.0e-168 594.3 551 59.0
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 1.5e-167 593.6 542 57.7
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 2.9e-166 589.3 536 57.3
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 3.8e-166 589.0 525 57.9
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 7.9e-164 581.3 534 55.6
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 3.0e-163 579.3 533 56.5
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 4.3e-162 575.5 534 54.5
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 2.1e-161 573.2 535 56.3
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 5.3e-160 568.5 529 58.0
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 1.2e-159 567.4 536 56.0
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 2.5e-157 559.7 538 55.9
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 2.5e-157 559.7 535 55.0
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 2.7e-156 556.2 541 54.5
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 6.0e-156 555.1 535 53.8
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 6.0e-156 555.1 542 54.4
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.0e-155 554.3 483 59.2
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 3.9e-155 552.4 540 55.0
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 1.1e-154 550.8 542 54.1
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 1.3e-153 547.4 545 53.0
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 8.2e-153 544.7 545 53.2
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 3.1e-152 542.7 544 53.3
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 2.0e-151 540.0 541 52.5
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 7.6e-151 538.1 548 52.7
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 1.0e-150 537.7 556 52.7
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.3e-150 537.3 529 56.1
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 9.3e-149 531.2 547 52.3
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 2.7e-148 529.6 536 51.7
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 3.6e-148 529.3 538 51.9
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 8.7e-147 524.6 547 51.9
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 9.7e-146 521.2 538 51.5
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 8.2e-145 518.1 553 50.5
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 3.1e-144 516.2 550 48.7
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 9.1e-144 514.6 539 51.4
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 5.9e-143 511.9 560 50.0
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 1.7e-142 510.4 537 52.1
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 1.8e-139 500.4 534 51.9
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 5.7e-138 495.4 536 49.1
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 9.7e-138 494.6 541 49.0
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 4.8e-137 492.3 541 50.1
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 6.3e-137 491.9 537 49.7
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 2.4e-136 490.0 545 49.0
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 5.3e-136 488.8 538 48.9
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 2.6e-135 486.5 544 49.1
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.0e-134 484.6 532 51.9
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 1.3e-134 484.2 539 48.2
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 2.2e-134 483.4 540 49.3
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 2.2e-134 483.4 538 48.3
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 1.1e-133 481.1 544 47.2
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 1.4e-133 480.7 538 49.1
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 3.2e-133 479.6 546 47.4
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 7.2e-133 478.4 524 48.7
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 1.2e-132 477.6 539 48.2
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 3.6e-132 476.1 539 48.1
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 3.0e-131 473.0 536 47.4
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 3.9e-131 472.6 536 47.4
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 3.9e-131 472.6 522 49.4
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 1.1e-130 471.1 527 47.6
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 1.1e-130 471.1 537 49.0
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 2.0e-130 470.3 539 47.7
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 1.3e-129 467.6 557 46.0
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 2.2e-129 466.8 539 48.2
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 2.8e-129 466.5 522 48.9
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 9.1e-128 461.5 545 46.2
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 1.6e-127 460.7 480 52.9
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 2.9e-126 456.4 575 45.2
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.1e-120 438.0 519 45.5
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 1.2e-119 434.5 539 44.7
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 1.7e-118 430.6 554 45.1
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 6.5e-118 428.7 495 49.3
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 4.2e-117 426.0 541 44.0
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 2.7e-116 423.3 550 44.7
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 1.4e-115 421.0 541 44.2
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 3.8e-110 402.9 533 45.0
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.6e-108 396.4 519 43.0
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 8.8e-107 391.7 541 41.6
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 5.4e-104 382.5 548 41.6
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 1.6e-103 380.9 546 41.9
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 1.6e-103 380.9 425 50.4
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 2.0e-103 380.6 520 41.7
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 8.3e-97 358.6 565 40.4
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 6.8e-91 339.0 544 37.9
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 8.9e-91 338.6 488 42.6
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.1e-84 317.4 538 37.7
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.7e-81 307.8 528 37.5
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.3e-81 305.4 528 37.9
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 3.6e-76 290.0 517 35.8
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 6.8e-75 285.8 487 36.3
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.4e-74 283.1 487 35.9
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 6.2e-60 236.1 408 37.7
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 8.1e-60 235.7 540 31.1
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.1e-56 225.3 483 34.2
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.1e-56 225.3 483 34.2
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 3.1e-51 207.2 274 44.2
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 1.7e-49 201.4 314 40.4
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 6.4e-49 199.5 154 62.3
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 4.2e-48 196.8 172 55.8
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 1.6e-44 184.9 144 62.5
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 5.5e-40 169.9 553 26.8
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 1.0e-38 165.6 548 28.5
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 7.4e-37 159.5 492 28.0
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 1.6e-36 158.3 551 25.2
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 7.2e-32 142.9 435 28.7
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 2.6e-26 124.4 475 25.3
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 2.1e-23 114.8 98 60.2
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 5.3e-19 100.1 449 22.5
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 2.9e-17 94.4 65 67.7
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 8.5e-17 92.8 117 41.0
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.4e-16 92.0 309 30.4
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 7.2e-16 89.7 58 67.2
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 6.1e-15 86.7 54 64.8
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 9.7e-13 79.3 189 28.0
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 1.3e-12 79.0 128 34.4
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.7e-12 77.4 82 50.0
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 8.2e-12 76.3 196 30.1
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 3.5e-10 70.9 393 21.4
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 4.5e-10 70.5 87 40.2
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 1.0e-09 69.3 178 33.1
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 7.2e-08 63.2 61 42.6


User provided reference genes

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