Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI34G2022 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 6.0e-292 1006.9 549 100.0
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 8.6e-174 614.4 571 57.3
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 2.0e-162 576.6 569 52.4
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 6.4e-161 571.6 571 54.6
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 7.1e-160 568.2 570 54.0
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 9.2e-160 567.8 572 54.4
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 4.6e-159 565.5 571 54.6
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 1.5e-157 560.5 569 51.7
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 1.5e-157 560.5 569 52.2
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 8.9e-155 551.2 574 51.2
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 8.9e-155 551.2 570 51.8
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 1.2e-154 550.8 589 49.9
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 1.5e-154 550.4 570 52.1
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 2.4e-152 543.1 590 50.5
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 7.8e-151 538.1 565 51.0
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 8.7e-150 534.6 578 49.7
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 9.0e-147 524.6 569 48.7
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 1.7e-145 520.4 566 49.8
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 1.9e-144 516.9 565 49.4
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 1.7e-142 510.4 567 46.9
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 1.1e-141 507.7 566 48.9
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 1.9e-141 506.9 570 49.1
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 3.6e-140 502.7 571 48.7
ClCG06G012120 Citrullus lanatus HOM05D004232 ORTHO05D004909 6.9e-139 498.4 567 48.5
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 1.2e-138 497.7 581 48.5
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.3e-137 494.2 566 47.7
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 2.4e-136 490.0 566 47.5
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 4.2e-136 489.2 565 46.7
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 7.1e-136 488.4 566 47.0
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 7.1e-136 488.4 571 47.5
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 1.6e-135 487.3 565 46.2
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 2.1e-135 486.9 566 46.6
PGR142G1232 Punica granatum HOM05D004232 ORTHO05D004909 3.5e-135 486.1 621 43.8
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 7.9e-135 485.0 567 48.5
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 7.9e-135 485.0 651 43.3
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.3e-134 484.2 566 47.2
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 3.3e-133 479.6 570 45.8
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 3.3e-133 479.6 570 45.8
Thhalv10018400m.g Eutrema salsugineum HOM05D004232 ORTHO05D004909 7.4e-133 478.4 561 45.5
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 2.1e-132 476.9 566 46.3
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 4.8e-132 475.7 571 45.9
Ca_21603_v3 Cicer arietinum L. HOM05D004232 ORTHO05D004909 6.2e-132 475.3 572 45.8
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 1.1e-131 474.6 568 46.8
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 3.1e-131 473.0 570 43.9
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 4.0e-131 472.6 568 46.0
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 2.6e-130 469.9 568 44.2
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 2.6e-130 469.9 562 44.8
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 2.6e-130 469.9 563 45.8
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 7.6e-130 468.4 568 44.9
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 1.0e-129 468.0 569 45.7
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 1.7e-129 467.2 568 46.3
Nn8g39758 Nelumbo nucifera HOM05D004232 ORTHO05D004909 4.9e-129 465.7 636 46.1
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 1.9e-128 463.8 564 45.6
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 1.9e-128 463.8 565 43.7
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 5.5e-128 462.2 562 43.8
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 7.1e-128 461.8 590 44.4
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 1.6e-127 460.7 570 44.6
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 3.5e-127 459.5 559 44.4
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 7.9e-127 458.4 568 44.5
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 5.1e-126 455.7 567 44.4
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 8.7e-126 454.9 570 42.6
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 3.3e-125 453.0 567 42.3
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 5.7e-125 452.2 573 44.2
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 7.4e-125 451.8 582 44.5
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 7.4e-125 451.8 577 44.9
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 3.7e-124 449.5 610 46.2
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 3.7e-124 449.5 564 44.0
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 8.2e-124 448.4 563 43.9
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 1.4e-123 447.6 567 43.0
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 3.1e-123 446.4 567 43.7
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 4.0e-123 446.0 567 47.3
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 9.0e-123 444.9 570 41.9
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 3.4e-122 443.0 572 43.5
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 3.8e-121 439.5 573 46.4
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 6.5e-121 438.7 580 44.0
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 6.5e-121 438.7 580 44.0
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 1.1e-120 438.0 592 43.9
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 1.9e-120 437.2 558 43.2
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 1.6e-119 434.1 572 43.0
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 7.9e-119 431.8 594 40.6
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 1.0e-118 431.4 573 42.9
Dinv41413 Davidia involucrata HOM05D004232 ORTHO05D004909 1.0e-118 431.4 324 63.3
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 2.2e-116 423.7 327 61.5
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 3.7e-116 422.9 565 42.7
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 4.8e-116 422.5 570 41.4
FAN23G0432 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.1e-115 421.4 523 43.8
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 5.5e-112 409.1 579 45.9
ECA236G3428 Erigeron canadensis HOM05D004232 ORTHO05D004909 7.2e-112 408.7 568 40.8
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 1.6e-111 407.5 576 40.1
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 1.4e-110 404.4 319 60.8
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 5.1e-110 402.5 574 44.3
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 9.7e-109 398.3 443 47.0
SGA_v2.0_scaffold387G50524 Striga asiatica HOM05D004232 ORTHO05D004909 1.8e-107 394.0 564 41.7
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 3.1e-107 393.3 365 51.8
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 9.1e-107 391.7 562 40.4
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.2e-106 391.3 439 45.8
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 1.0e-105 388.3 574 39.5
Aqoxy7G03504 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 1.2e-103 381.3 572 39.5
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 1.2e-103 381.3 580 39.1
Lsat_1_v5_gn_8_59400 Lactuca sativa HOM05D004232 ORTHO05D004909 2.7e-103 380.2 567 37.7
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 1.8e-102 377.5 572 39.0
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 2.3e-102 377.1 572 38.8
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 6.7e-102 375.6 612 38.6
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 8.8e-102 375.2 572 38.6
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.1e-101 374.8 573 42.1
Rhsim01G0048800 Rhododendron simsii HOM05D004232 ORTHO05D004909 4.1e-99 366.3 442 42.8
ECA236G0371 Erigeron canadensis HOM05D004232 ORTHO05D004909 7.0e-99 365.5 552 39.5
CARHR073800 Cardamine hirsuta HOM05D004232 ORTHO05D004909 5.9e-98 362.5 581 37.0
Rhsim01G0048600 Rhododendron simsii HOM05D004232 ORTHO05D004909 2.1e-95 354.0 498 42.2
TWI63G0539 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 1.1e-91 341.7 562 39.0
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 2.4e-91 340.5 527 39.3
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 2.6e-90 337.0 571 38.7
Medtr4g116910 Medicago truncatula HOM05D004232 ORTHO05D004909 4.2e-88 329.7 566 38.2
Rhsim01G0048400 Rhododendron simsii HOM05D004232 ORTHO05D004909 3.0e-86 323.6 338 47.3
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 4.0e-86 323.2 320 47.2
TPR.G15793 Trifolium pratense HOM05D004232 ORTHO05D004909 4.4e-85 319.7 589 36.2
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 1.4e-83 314.7 564 34.4
Migut.G00058 Erythranthe guttata HOM05D004232 ORTHO05D004909 4.1e-83 313.2 569 35.5
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 1.2e-79 301.6 329 46.5
COL.COLO4_18748 Corchorus olitorius HOM05D004232 ORTHO05D004909 3.6e-79 300.1 243 59.7
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 4.0e-78 296.6 572 34.3
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 2.2e-76 290.8 567 35.1
Cpa.g.sc46.107 Carica papaya HOM05D004232 ORTHO05D004909 2.0e-74 284.3 496 36.9
Cpa.g.sc46.108 Carica papaya HOM05D004232 ORTHO05D004909 9.5e-72 275.4 573 37.0
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 2.9e-65 253.8 302 43.0
CSS0034823 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 5.0e-65 253.1 205 57.1
Peaxi162Scf00155g00514 Petunia axillaris HOM05D004232 ORTHO05D004909 8.9e-62 242.3 375 36.0
ATR0629G133 Amborella trichopoda HOM05D004232 ORTHO05D004909 3.5e-58 230.3 437 33.9
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 7.8e-58 229.2 313 36.4
BraA09t37368Z Brassica rapa HOM05D004232 ORTHO05D004909 3.0e-57 227.3 275 45.1
ATR0629G116 Amborella trichopoda HOM05D004232 ORTHO05D004909 7.3e-56 222.6 437 32.0
Nitab4.5_0011109g0010 Nicotiana tabacum HOM05D004232 ORTHO05D004909 7.3e-56 222.6 355 35.8
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 8.9e-54 215.7 569 29.2
BcaB07g31225 Brassica carinata HOM05D004232 ORTHO05D004909 5.4e-51 206.5 211 48.3
Zm00001eb028210 Zea mays HOM05D004232 ORTHO05D004909 1.2e-50 205.3 250 42.0
COL.COLO4_18749 Corchorus olitorius HOM05D004232 ORTHO05D004909 4.0e-46 190.3 300 43.7
Ah.12g062460 Amaranthus hybridus HOM05D004232 ORTHO05D004909 3.3e-40 170.6 551 27.0
QL05p008018 Quercus lobata HOM05D000129 ORTHO05D004909 5.6e-40 169.9 166 50.0
SEGI_07783 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 8.9e-38 162.5 487 26.3
QL05p007856 Quercus lobata HOM05D004232 ORTHO05D004909 1.2e-37 162.2 578 27.3
QL05p007882 Quercus lobata HOM05D004232 ORTHO05D004909 2.7e-34 151.0 105 63.8
Nitab4.5_0010824g0020 Nicotiana tabacum HOM05D004232 ORTHO05D004909 8.1e-31 139.4 316 30.7
MCO04G498 Micromonas commoda HOM05D004232 ORTHO05D004909 1.8e-30 138.3 589 25.8
ATR0629G098 Amborella trichopoda HOM05D004232 ORTHO05D004909 1.1e-27 129.0 86 65.1
ECA236G4659 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.4e-27 128.6 152 43.4
VMungo1215G1753 Vigna mungo HOM05D004232 ORTHO05D004909 5.4e-27 126.7 195 37.4
CSS0018310 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 8.1e-23 112.8 347 29.1
QL05p007971 Quercus lobata HOM05D004232 ORTHO05D004909 6.9e-22 109.8 207 34.3
Ah.06g190310 Amaranthus hybridus HOM05D004232 ORTHO05D004909 2.6e-21 107.8 68 64.7
Nitab4.5_0000660g0030 Nicotiana tabacum HOM05D004232 ORTHO05D004909 3.4e-21 107.5 330 26.7
ECA236G3386 Erigeron canadensis HOM05D004232 ORTHO05D004909 4.5e-21 107.1 83 57.8
ATR0629G041 Amborella trichopoda HOM05D004232 ORTHO05D004909 9.9e-21 105.9 85 58.8
PRCOL_00000769 Prasinoderma coloniale HOM05D004232 ORTHO05D004909 2.9e-20 104.4 344 24.4
QL05p007864 Quercus lobata HOM05D004232 ORTHO05D004909 1.9e-19 101.7 71 64.8
Nitab4.5_0008408g0040 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.2e-18 99.0 178 36.0
Cre02.g111350 Chlamydomonas reinhardtii HOM05D004232 ORTHO05D004909 7.9e-18 96.3 430 21.2
CSS0031603 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 3.9e-17 94.0 352 26.7
TPR.G29050 Trifolium pratense HOM05D004232 ORTHO05D004909 5.1e-17 93.6 86 51.2
Glyma.17G103833 Glycine max HOM05D004232 ORTHO05D004909 2.8e-15 87.8 168 31.5
C02p46280 Brassica napus HOM05D000783 ORTHO05D000705 8.1e-15 86.3 94 42.6
Cfa025051 Carpinus fangiana HOM05D004232 ORTHO05D004909 4.0e-14 84.0 313 26.2
Nitab4.5_0000843g0060 Nicotiana tabacum HOM05D004232 ORTHO05D004909 6.5e-12 76.6 97 43.3
Oeu050464.1 Olea europaea HOM05D004232 ORTHO05D004909 1.4e-11 75.5 74 47.3
Glyma.17G103767 Glycine max HOM05D004232 ORTHO05D004909 1.9e-11 75.1 87 43.7
C06p53770 Brassica napus HOM05D004232 ORTHO05D004909 1.2e-10 72.4 84 54.8
ClCG02G019570 Citrullus lanatus HOM05D006922 ORTHO05D008564 3.7e-07 60.8 332 22.3
HanXRQChr16g0532771 Helianthus annuus HOM05D004232 ORTHO05D004909 1.1e-06 59.3 43 53.5
COL.COLO4_18744 Corchorus olitorius HOM05D004232 ORTHO05D004909 2.4e-06 58.2 43 72.1
Aqoxy1G03964 Aquilegia oxysepala HOM05D002303 ORTHO05D007639 4.1e-06 57.4 152 22.4
Rhsim13G0025400 Rhododendron simsii HOM05D003405 ORTHO05D003920 9.0e-06 56.2 160 24.4


User provided reference genes

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