Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI34G1796 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 0.0e+00 1158.3 572 100.0
TWI60G0613 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 1.1e-288 996.1 568 88.4
Potri.001G325500 Populus trichocarpa HOM05D005105 ORTHO05D006244 1.6e-223 779.6 572 69.2
Manes.04G087600 Manihot esculenta HOM05D005105 ORTHO05D006244 1.0e-222 776.9 582 67.5
Prupe.3G310100 Prunus persica HOM05D005105 ORTHO05D006244 9.8e-221 770.4 569 66.4
MD09G1007000 Malus domestica HOM05D005105 ORTHO05D006244 4.1e-219 765.0 574 66.6
FAN09G0463 Fragaria x ananassa HOM05D005105 ORTHO05D006244 9.1e-219 763.8 567 67.2
Thecc.04G041900 Theobroma cacao HOM05D005105 ORTHO05D006244 1.6e-218 763.1 578 65.9
FAN02G1943 Fragaria x ananassa HOM05D005105 ORTHO05D006244 7.7e-218 760.8 567 67.0
QL02p070577 Quercus lobata HOM05D005105 ORTHO05D006244 1.3e-217 760.0 579 66.7
FAN14G3030 Fragaria x ananassa HOM05D005105 ORTHO05D006244 6.6e-217 757.7 567 67.2
RcHm_v2.0_Chr2g0176111 Rosa chinensis HOM05D005105 ORTHO05D006244 3.0e-214 748.8 579 64.9
Duzib147G0369 Durio zibethinus HOM05D005105 ORTHO05D006244 3.4e-213 745.3 585 64.1
Ciclev10014761m.g Citrus clementina HOM05D005105 ORTHO05D006244 5.7e-213 744.6 587 65.8
arahy.Tifrunner.gnm1.ann1.JMV5LB Arachis hypogaea HOM05D005105 ORTHO05D006244 1.3e-212 743.4 584 63.2
FAN05G2765 Fragaria x ananassa HOM05D005105 ORTHO05D006244 2.2e-212 742.7 587 64.6
Glyma.16G052500 Glycine max HOM05D005105 ORTHO05D006244 7.0e-211 737.6 569 64.7
Solyc02g082210.4 Solanum lycopersicum HOM05D005105 ORTHO05D006244 3.8e-209 731.9 569 63.1
Lalb_Chr00c40g0412501 Lupinus albus HOM05D005105 ORTHO05D006244 1.9e-208 729.6 568 63.9
Gorai.006G044700 Gossypium raimondii HOM05D005105 ORTHO05D006244 2.5e-208 729.2 602 61.5
CANSAT21G1015 Cannabis sativa HOM05D005105 ORTHO05D006244 4.3e-208 728.4 565 63.5
TAR629G0447 Trochodendron aralioides HOM05D005105 ORTHO05D006244 4.3e-208 728.4 575 63.7
Gohir.A07G231500 Gossypium hirsutum HOM05D005105 ORTHO05D006244 6.1e-207 724.5 573 63.0
Gohir.D07G238700 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.3e-206 722.6 573 63.4
Lj1g0026609 Lotus japonicus HOM05D005105 ORTHO05D006244 4.0e-206 721.8 569 62.7
PGR142G1816 Punica granatum HOM05D005105 ORTHO05D006244 4.0e-206 721.8 566 64.3
Gorai.001G274700 Gossypium raimondii HOM05D005105 ORTHO05D006244 6.8e-206 721.1 573 62.7
Oeu020395.1 Olea europaea HOM05D005105 ORTHO05D006244 1.2e-205 720.3 569 63.3
VMungo1383G1917 Vigna mungo HOM05D005105 ORTHO05D006244 2.0e-205 719.5 569 62.7
Cfa007197 Carpinus fangiana HOM05D005105 ORTHO05D006244 2.6e-205 719.2 574 64.1
Nitab4.5_0011381g0040 Nicotiana tabacum HOM05D005105 ORTHO05D006244 5.8e-205 718.0 568 63.0
Cc07_g01060 Coffea canephora HOM05D005105 ORTHO05D006244 7.5e-205 717.6 573 63.7
arahy.Tifrunner.gnm1.ann1.B1CDD0 Arachis hypogaea HOM05D005105 ORTHO05D006244 3.7e-204 715.3 579 61.3
Phvul.001G090000 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 2.4e-203 712.6 569 63.4
CiPaw.03G004800 Carya illinoinensis HOM05D005105 ORTHO05D006244 1.2e-202 710.3 533 67.0
Haze_14911 Corylus avellana HOM05D005105 ORTHO05D006244 2.0e-202 709.5 558 64.5
SalBow4G0131 Salvia bowleyana HOM05D005105 ORTHO05D006244 6.0e-202 708.0 569 61.9
Ca_07318_v3 Cicer arietinum L. HOM05D005105 ORTHO05D006244 1.3e-201 706.8 573 61.3
Migut.F00035 Erythranthe guttata HOM05D005105 ORTHO05D006244 2.3e-201 706.1 570 61.6
MELO3C025087.2 Cucumis melo HOM05D005105 ORTHO05D006244 3.9e-201 705.3 584 61.5
Lj2g0026571 Lotus japonicus HOM05D005105 ORTHO05D006244 5.0e-201 704.9 576 63.2
Medtr7g026520 Medicago truncatula HOM05D005105 ORTHO05D006244 8.6e-201 704.1 573 62.0
ClCG01G008700 Citrullus lanatus HOM05D005105 ORTHO05D006244 4.3e-200 701.8 582 61.0
Nn3g16360 Nelumbo nucifera HOM05D005105 ORTHO05D006244 1.2e-199 700.3 568 62.5
GSVIVG01033038001 Vitis vinifera HOM05D005105 ORTHO05D006244 2.1e-199 699.5 519 67.8
CsaV3_5G024330 Cucumis sativus L. HOM05D005105 ORTHO05D006244 3.6e-199 698.7 501 67.3
HanXRQChr17g0551611 Helianthus annuus HOM05D005105 ORTHO05D006244 8.9e-198 694.1 570 60.9
Sed0022814 Sechium edule HOM05D005105 ORTHO05D006244 1.5e-197 693.3 579 61.0
GSVIVG01008594001 Vitis vinifera HOM05D005105 ORTHO05D006244 2.6e-197 692.6 588 60.0
Psat3g181600 Pisum sativum HOM05D005105 ORTHO05D006244 7.5e-197 691.0 576 61.6
PSO017G6125 Papaver somniferum HOM05D005105 ORTHO05D006244 1.7e-196 689.9 570 61.2
Aqoxy5G03244_Aqoxy5G03245 Aquilegia oxysepala HOM05D005105 ORTHO05D006244 7.0e-195 684.5 560 62.0
Rhsim08G0041000 Rhododendron simsii HOM05D005105 ORTHO05D006244 2.1e-194 682.9 573 60.7
C07p36060 Brassica napus HOM05D005105 ORTHO05D006244 2.7e-194 682.6 574 61.1
BraA06t27085Z Brassica rapa HOM05D005105 ORTHO05D006244 2.7e-194 682.6 583 61.7
Thhalv10003939m.g Eutrema salsugineum HOM05D005105 ORTHO05D006244 3.5e-194 682.2 575 61.7
PSO478G4366 Papaver somniferum HOM05D005105 ORTHO05D006244 4.6e-194 681.8 570 60.2
AUR62003394 Chenopodium quinoa HOM05D005105 ORTHO05D006244 1.7e-193 679.9 575 60.0
DCAR_015209 Daucus carota HOM05D005105 ORTHO05D006244 1.7e-193 679.9 587 59.5
EL10Ac6g15451 Beta vulgaris HOM05D005105 ORTHO05D006244 2.3e-193 679.5 577 58.6
THA.LOC104825638 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 2.3e-193 679.5 574 60.6
AT3G26950 Arabidopsis thaliana HOM05D005105 ORTHO05D006244 3.0e-193 679.1 577 61.4
Sabra16G0208000 Salix brachista HOM05D005105 ORTHO05D006244 3.9e-193 678.7 540 64.1
Sp2g16080 Schrenkiella parvula HOM05D005105 ORTHO05D006244 1.1e-192 677.2 568 61.3
AL5G15980 Arabidopsis lyrata HOM05D005105 ORTHO05D006244 1.6e-191 673.3 576 60.8
BcaC06g31032 Brassica carinata HOM05D005105 ORTHO05D006244 8.1e-191 671.0 571 61.3
Carub.0005s0514 Capsella rubella HOM05D005105 ORTHO05D006244 1.8e-190 669.8 579 60.6
Lj7A613T64 Lonicera japonica HOM05D005105 ORTHO05D006244 6.8e-190 667.9 617 56.6
Sc09g0007730 Simmondsia chinensis HOM05D005105 ORTHO05D006244 2.6e-189 666.0 578 60.6
Glyma.16G146100 Glycine max HOM05D005105 ORTHO05D006244 9.9e-189 664.1 572 60.1
Lsat_1_v5_gn_0_23961 Lactuca sativa HOM05D005105 ORTHO05D006244 9.9e-189 664.1 567 58.6
Nitab4.5_0011717g0030 Nicotiana tabacum HOM05D005105 ORTHO05D006244 1.3e-188 663.7 567 58.7
Atru.chr6.2614 Acer truncatum HOM05D005105 ORTHO05D006244 2.2e-188 662.9 570 58.8
ECA246G4542 Erigeron canadensis HOM05D005105 ORTHO05D006244 7.8e-186 654.4 568 57.7
vmacro18364 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 1.7e-185 653.3 640 54.2
VMungo0464G0185 Vigna mungo HOM05D005105 ORTHO05D006244 2.3e-185 652.9 555 61.4
BcaC06g33873 Brassica carinata HOM05D005105 ORTHO05D006244 2.1e-183 646.4 574 58.5
A06p41600 Brassica napus HOM05D005105 ORTHO05D006244 2.1e-183 646.4 576 59.0
THA.LOC104805319 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 6.2e-183 644.8 588 57.1
AUR62029433 Chenopodium quinoa HOM05D005105 ORTHO05D006244 1.4e-182 643.7 551 59.3
Actinidia36228 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.8e-182 643.3 513 62.6
HanXRQChr05g0155591 Helianthus annuus HOM05D005105 ORTHO05D006244 1.8e-182 643.3 577 56.7
BolC7t44120H Brassica oleracea HOM05D005105 ORTHO05D006244 8.9e-182 641.0 574 58.4
vmacro19146 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 9.9e-181 637.5 624 53.7
ATR0582G106 Amborella trichopoda HOM05D005105 ORTHO05D006244 2.1e-178 629.8 505 60.6
DCAR_007509 Daucus carota HOM05D005105 ORTHO05D006244 8.1e-175 617.8 567 56.6
CDE06G1277 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 3.1e-174 615.9 509 59.3
Aa31LG2G5630 Aethionema arabicum HOM05D005105 ORTHO05D006244 6.9e-174 614.8 604 54.5
Phvul.004G070700 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 9.3e-171 604.4 573 55.1
Os11g0507400 Oryza sativa ssp. japonica HOM05D005105 ORTHO05D006244 1.2e-165 587.4 577 52.9
FvH4_6g53950 Fragaria vesca HOM05D005105 ORTHO05D006244 1.1e-163 580.9 366 74.0
Cpa.g.sc70.110 Carica papaya HOM05D005105 ORTHO05D006244 1.2e-162 577.4 464 63.8
Duzib264G1310 Durio zibethinus HOM05D005105 ORTHO05D006244 1.0e-161 574.3 574 54.0
SHI04027 Sapria himalayana HOM05D005105 ORTHO05D006244 1.5e-160 570.5 612 52.3
Gohir.A09G038300 Gossypium hirsutum HOM05D005105 ORTHO05D006244 7.4e-160 568.2 466 62.7
Hma1.2p1_0093F.1_g046930 Hydrangea macrophylla HOM05D005105 ORTHO05D006244 9.9e-157 557.8 387 66.1
Atru.chr6.2613 Acer truncatum HOM05D005105 ORTHO05D006244 4.2e-155 552.4 348 73.0
CARHR148130 Cardamine hirsuta HOM05D005105 ORTHO05D006244 1.0e-153 547.7 387 67.2
unitig_0.g1913 Utricularia gibba HOM05D005105 ORTHO05D006244 5.1e-153 545.4 450 60.0
Eucgr.I01623 Eucalyptus grandis HOM05D005105 ORTHO05D006244 1.1e-150 537.7 347 72.3
Dinv33309 Davidia involucrata HOM05D005105 ORTHO05D006244 1.5e-149 533.9 412 65.5
Peaxi162Scf00331g00014 Petunia axillaris HOM05D005105 ORTHO05D006244 4.2e-147 525.8 582 50.9
Prupe.3G297400 Prunus persica HOM05D005105 ORTHO05D006244 1.0e-140 504.6 561 51.2
MD17G1010700 Malus domestica HOM05D005105 ORTHO05D006244 3.8e-140 502.7 344 69.8
Lsat_1_v5_gn_5_10960 Lactuca sativa HOM05D005105 ORTHO05D006244 5.0e-140 502.3 563 49.0
CSS0048130 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 1.1e-131 474.6 347 66.0
COL.COLO4_13307 Corchorus olitorius HOM05D005105 ORTHO05D006244 4.2e-131 472.6 555 49.0
Lj5A92G44 Lonicera japonica HOM05D005105 ORTHO05D006244 5.7e-128 462.2 327 67.9
TWI34G0688 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 6.3e-127 458.8 222 100.0
SMO180G0002 Selaginella moellendorffii HOM05D005105 ORTHO05D006244 1.8e-126 457.2 459 49.0
CSS0029044 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 3.0e-121 439.9 321 64.8
ECA246G1012 Erigeron canadensis HOM05D005105 ORTHO05D006244 1.1e-120 438.0 499 48.7
PGSC0003DMG400013660 Solanum tuberosum HOM05D005105 ORTHO05D006244 2.8e-119 433.3 301 67.4
Sopen02g026870 Solanum pennellii HOM05D005105 ORTHO05D006244 4.8e-119 432.6 301 67.1
Pp3c21_14570 Physcomitrium patens HOM05D005105 ORTHO05D006244 5.0e-116 422.5 500 44.4
HPP92_009891 Vanilla planifolia HOM05D005105 ORTHO05D006244 2.5e-115 420.2 319 61.8
Pp3c1_35010 Physcomitrium patens HOM05D005105 ORTHO05D006244 2.3e-113 413.7 550 41.6
Glyma.02G065000 Glycine max HOM05D005105 ORTHO05D006244 3.7e-111 406.4 387 55.8
PSO063G6475 Papaver somniferum HOM05D005105 ORTHO05D006244 8.6e-100 368.6 334 57.5
Actinidia18328 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.0e-92 345.1 255 65.5
THA.LOC104813335 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.1e-91 341.7 271 62.0
Dinv23187 Davidia involucrata HOM05D005105 ORTHO05D006244 2.5e-91 340.5 244 67.6
AagrBONN_evm.TU.Sc2ySwM_340.35 Anthoceros agrestis HOM05D005105 ORTHO05D006244 1.3e-79 301.6 517 34.2
HPP92_009881 Vanilla planifolia HOM05D005105 ORTHO05D006244 3.6e-74 283.5 227 59.5
Actinidia18329 Actinidia chinensis HOM05D005105 ORTHO05D006244 3.5e-69 266.9 277 52.0
Gohir.D09G039750 Gossypium hirsutum HOM05D005105 ORTHO05D006244 9.9e-64 248.8 161 68.9
CDE05G2066 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 1.7e-60 238.0 146 74.7
FAN05G0264 Fragaria x ananassa HOM05D005105 ORTHO05D006244 2.6e-56 224.2 247 50.6
Actinidia25549 Actinidia chinensis HOM05D005105 ORTHO05D006244 2.3e-52 211.1 140 71.4
HPP92_009897 Vanilla planifolia HOM05D005105 ORTHO05D006244 2.8e-50 204.1 260 44.6
Actinidia05877 Actinidia chinensis HOM05D000139 ORTHO05D000103 1.5e-40 171.8 204 49.5
SGA_v2.0_scaffold253G45172 Striga asiatica HOM05D005105 ORTHO05D006244 2.7e-37 161.0 174 53.4
CBR_g57654 Chara braunii HOM05D000004 ORTHO05D000002 1.8e-36 158.3 172 42.4
Dinv23186 Davidia involucrata HOM05D005105 ORTHO05D006244 3.0e-36 157.5 174 52.9
Atru.chr6.2612 Acer truncatum HOM05D005105 ORTHO05D006244 3.9e-36 157.1 182 53.3
Gohir.D09G039801 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.9e-35 154.8 183 50.8
Glyma.19G097001 Glycine max HOM05D005105 ORTHO05D006244 5.5e-30 136.7 100 71.0
Actinidia25550 Actinidia chinensis HOM05D005105 ORTHO05D006244 9.3e-30 136.0 150 42.7
Lj5A92G45 Lonicera japonica HOM05D005105 ORTHO05D006244 1.2e-29 135.6 141 48.2
Ah.03g148260 Amaranthus hybridus HOM05D005105 ORTHO05D006244 1.0e-28 132.5 154 53.2
Dinv33310 Davidia involucrata HOM05D005105 ORTHO05D006244 3.3e-27 127.5 136 52.9
Glyma.19G097101 Glycine max HOM05D005105 ORTHO05D006244 2.4e-25 121.3 84 71.4
CSS0040735 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 1.8e-09 68.6 122 42.6
SEGI_15377 Sequoiadendron giganteum HOM05D005105 ORTHO05D006244 4.5e-08 63.9 67 47.8
HPP92_009880 Vanilla planifolia HOM05D005105 ORTHO05D006244 1.7e-07 62.0 71 40.8


User provided reference genes

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