Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 0.0e+00 1333.9 745 100.0
TWI60G1132 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 3.4e-88 330.5 335 63.3
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 9.6e-51 206.1 784 33.8
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 5.8e-48 196.8 1013 29.5
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 2.7e-45 188.0 893 31.7
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 4.6e-45 187.2 804 32.7
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 2.9e-39 167.9 788 33.1
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 4.2e-38 164.1 845 29.2
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 1.5e-35 155.6 772 29.4
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 4.0e-33 147.5 806 27.9
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 6.9e-33 146.7 780 31.5
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 5.8e-32 143.7 765 30.6
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 1.7e-31 142.1 805 29.3
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 2.2e-31 141.7 575 35.7
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 1.1e-30 139.4 864 29.9
TWI60G0676 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 1.1e-30 139.4 194 49.0
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 7.1e-30 136.7 850 31.1
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 3.5e-29 134.4 252 42.1
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 8.7e-28 129.8 251 41.8
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 1.1e-27 129.4 846 26.5
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 1.5e-27 129.0 823 26.9
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 2.5e-27 128.3 843 25.9
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 5.7e-27 127.1 251 39.4
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 9.6e-27 126.3 581 29.4
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 3.7e-26 124.4 762 27.6
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 4.8e-26 124.0 582 29.7
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 2.4e-25 121.7 764 27.5
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 9.0e-25 119.8 245 42.0
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 7.6e-24 116.7 776 28.4
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 1.0e-23 116.3 225 40.4
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 1.7e-23 115.5 315 34.3
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 2.9e-23 114.8 784 25.6
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 4.9e-23 114.0 809 26.2
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 6.5e-23 113.6 242 40.9
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 8.4e-23 113.2 776 26.2
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 8.4e-23 113.2 475 29.3
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 1.4e-22 112.5 235 37.0
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 2.7e-21 108.2 457 30.2
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 6.1e-21 107.1 239 38.5
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 1.8e-20 105.5 768 25.0
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 1.8e-20 105.5 248 38.3
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 2.3e-20 105.1 509 29.1
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 3.0e-20 104.8 297 36.7
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 6.7e-20 103.6 520 28.8
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 1.1e-19 102.8 775 24.5
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 1.5e-19 102.4 251 35.5
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 1.9e-19 102.1 348 31.3
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 1.9e-19 102.1 348 31.3
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 1.9e-19 102.1 502 30.3
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 2.5e-19 101.7 799 26.7
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 3.3e-19 101.3 340 32.1
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 7.4e-19 100.1 285 38.6
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 1.3e-18 99.4 132 52.3
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 2.2e-18 98.6 342 31.9
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 2.8e-18 98.2 806 26.4
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 3.7e-18 97.8 247 44.5
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 3.7e-18 97.8 247 46.6
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 4.8e-18 97.4 438 30.6
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 4.8e-18 97.4 218 36.2
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 4.8e-18 97.4 345 31.6
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 6.3e-18 97.1 218 39.4
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 6.3e-18 97.1 278 34.9
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 6.3e-18 97.1 240 35.8
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 1.1e-17 96.3 497 27.2
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 1.1e-17 96.3 259 36.7
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 1.1e-17 96.3 775 26.3
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 1.4e-17 95.9 303 33.0
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 1.4e-17 95.9 812 26.8
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 1.8e-17 95.5 207 37.7
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 3.1e-17 94.7 448 30.6
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 4.1e-17 94.4 634 27.1
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 4.1e-17 94.4 117 51.3
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 6.9e-17 93.6 305 33.8
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 9.0e-17 93.2 148 46.6
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 9.0e-17 93.2 148 46.6
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 9.0e-17 93.2 132 48.5
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 2.0e-16 92.0 505 28.3
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 4.5e-16 90.9 488 27.5
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 4.5e-16 90.9 459 28.5
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 5.9e-16 90.5 523 27.0
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 7.7e-16 90.1 431 27.8
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 1.7e-15 89.0 238 34.9
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 2.2e-15 88.6 456 29.8
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 2.9e-15 88.2 578 25.3
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 3.8e-15 87.8 343 36.2
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 3.8e-15 87.8 519 27.4
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 3.8e-15 87.8 764 24.2
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 3.8e-15 87.8 363 31.4
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 5.0e-15 87.4 130 48.5
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 5.0e-15 87.4 595 27.1
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 6.5e-15 87.0 477 27.0
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 6.5e-15 87.0 477 27.0
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 8.5e-15 86.7 593 26.6
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 8.5e-15 86.7 405 28.4
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 8.5e-15 86.7 509 29.3
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 1.1e-14 86.3 487 27.3
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 2.5e-14 85.1 534 27.3
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 2.5e-14 85.1 355 31.3
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 3.2e-14 84.7 754 26.0
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 4.2e-14 84.3 120 47.5
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 1.2e-13 82.8 781 25.2
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 1.6e-13 82.4 797 25.6
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 3.6e-13 81.3 249 29.7
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 4.6e-13 80.9 367 31.6
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 6.1e-13 80.5 317 29.3
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 6.1e-13 80.5 541 27.0
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 6.1e-13 80.5 442 33.9
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 1.4e-12 79.3 812 25.2
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 1.8e-12 79.0 759 25.8
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 2.3e-12 78.6 126 47.6
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 3.0e-12 78.2 450 33.8
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 3.9e-12 77.8 467 26.3
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 2.0e-11 75.5 122 43.4
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 2.0e-11 75.5 269 31.2
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.0e-11 75.5 771 26.1
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 3.3e-11 74.7 114 46.5
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 7.4e-11 73.6 280 30.4
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 2.2e-10 72.0 71 60.6
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 3.7e-10 71.2 140 39.3
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 3.7e-10 71.2 442 28.1
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 4.8e-10 70.9 772 22.9
Duzib128G1713 Durio zibethinus HOM05D004299 ORTHO05D003557 6.3e-10 70.5 187 35.3
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 6.3e-10 70.5 119 42.0
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 6.3e-10 70.5 73 58.9
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 5.3e-09 67.4 400 28.5
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 9.1e-09 66.6 370 28.6
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 2.0e-08 65.5 303 28.1
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 1.7e-07 62.4 39 76.9
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 6.5e-07 60.5 598 24.2
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 8.5e-07 60.1 79 48.1
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 1.4e-06 59.3 430 28.1
Zm00001eb430160 Zea mays HOM05D033178 ORTHO05D037852 1.4e-06 59.3 104 39.4
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 2.5e-06 58.5 35 80.0
Zm00001eb251590 Zea mays HOM05D021310 ORTHO05D003557 5.5e-06 57.4 130 38.5
ATR0149G001 Amborella trichopoda HOM05D033261 ORTHO05D003557 9.4e-06 56.6 41 70.7
Ciclev10023587m.g Citrus clementina HOM05D004299 ORTHO05D003557 9.4e-06 56.6 186 33.3
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 9.4e-06 56.6 37 73.0
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 9.4e-06 56.6 37 73.0
Lalb_Chr16g0376621 Lupinus albus HOM05D004299 ORTHO05D003557 9.4e-06 56.6 478 24.1
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 9.4e-06 56.6 106 36.8


User provided reference genes

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