Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI34G1337 Tripterygium wilfordii HOM05D006074 ORTHO05D008728 4.7e-233 810.8 411 100.0
MD09G1048800 Malus domestica HOM05D006074 ORTHO05D008728 5.0e-150 535.0 409 66.7
QL02p081203 Quercus lobata HOM05D006074 ORTHO05D008728 4.2e-149 531.9 432 65.5
TAR729G0002 Trochodendron aralioides HOM05D006074 ORTHO05D008728 5.5e-149 531.6 426 65.3
TAR622G0709 Trochodendron aralioides HOM05D006074 ORTHO05D008728 1.6e-148 530.0 363 73.6
Prupe.3G270100 Prunus persica HOM05D006074 ORTHO05D008728 7.9e-148 527.7 412 65.8
FAN02G2663 Fragaria x ananassa HOM05D006074 ORTHO05D008728 3.0e-147 525.8 411 66.7
Sabra17G0072000 Salix brachista HOM05D006074 ORTHO05D008728 1.5e-146 523.5 409 67.2
Potri.017G080300 Populus trichocarpa HOM05D006074 ORTHO05D008728 2.5e-146 522.7 427 65.8
RcHm_v2.0_Chr2g0168871 Rosa chinensis HOM05D006074 ORTHO05D008728 2.5e-146 522.7 411 65.9
CiPaw.03G029000 Carya illinoinensis HOM05D006074 ORTHO05D008728 5.7e-146 521.5 365 72.3
Thecc.04G099800 Theobroma cacao HOM05D006074 ORTHO05D008728 2.0e-143 513.1 427 63.9
Duzib187G1598 Durio zibethinus HOM05D006074 ORTHO05D008728 3.4e-143 512.3 427 64.2
GSVIVG01011374001 Vitis vinifera HOM05D006074 ORTHO05D008728 3.4e-143 512.3 404 65.3
Cpa.g.sc14.19 Carica papaya HOM05D006074 ORTHO05D008728 1.3e-142 510.4 471 58.6
CSS0024892 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 3.8e-142 508.8 423 64.1
MBI02_g10680_MAGBIO Magnolia biondii HOM05D006074 ORTHO05D008728 8.5e-142 507.7 379 67.8
CANSAT64G1183 Cannabis sativa HOM05D006074 ORTHO05D008728 1.4e-141 506.9 424 63.4
FvH4_6g49080 Fragaria vesca HOM05D006074 ORTHO05D008728 5.5e-141 505.0 366 69.9
Actinidia02708 Actinidia chinensis HOM05D006074 ORTHO05D008728 1.2e-140 503.8 406 65.0
Gohir.A07G215200 Gossypium hirsutum HOM05D006074 ORTHO05D008728 6.1e-140 501.5 429 62.5
CANSAT64G2140 Cannabis sativa HOM05D006074 ORTHO05D008728 1.0e-139 500.7 424 63.2
CSS0026498 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 1.4e-139 500.4 404 65.6
Medtr1g039990 Medicago truncatula HOM05D006074 ORTHO05D008728 3.0e-139 499.2 354 71.8
PSO832G2479 Papaver somniferum HOM05D006074 ORTHO05D008728 8.8e-139 497.7 394 64.0
Psat1g075640 Pisum sativum HOM05D006074 ORTHO05D008728 1.5e-138 496.9 354 71.8
PSO591G0110 Papaver somniferum HOM05D006074 ORTHO05D008728 2.6e-138 496.1 375 65.9
PGR083G0972 Punica granatum HOM05D006074 ORTHO05D008728 1.7e-137 493.4 432 60.6
ClCG10G014940 Citrullus lanatus HOM05D006074 ORTHO05D008728 2.8e-137 492.7 367 70.3
Lj2g0007765 Lotus japonicus HOM05D006074 ORTHO05D008728 4.8e-137 491.9 388 67.0
vmacro18203 Vaccinium macrocarpon HOM05D006074 ORTHO05D008728 6.3e-137 491.5 424 62.3
THA.LOC104823933 Tarenaya hassleriana HOM05D006074 ORTHO05D008728 8.2e-137 491.1 410 61.7
Hma1.2p1_0449F.1_g155300 Hydrangea macrophylla HOM05D006074 ORTHO05D008728 1.1e-136 490.7 364 68.1
Lalb_Chr21g0318901 Lupinus albus HOM05D006074 ORTHO05D008728 3.1e-136 489.2 379 66.0
CsaV3_3G041590 Cucumis sativus L. HOM05D006074 ORTHO05D008728 2.0e-135 486.5 367 68.4
Oeu060929.1 Olea europaea HOM05D006074 ORTHO05D008728 3.5e-135 485.7 403 64.0
Rhsim08G0067900 Rhododendron simsii HOM05D006074 ORTHO05D008728 5.9e-135 485.0 427 61.6
Phvul.004G027100 Phaseolus vulgaris HOM05D006074 ORTHO05D008728 7.7e-135 484.6 353 71.1
Sp2g17410 Schrenkiella parvula HOM05D006074 ORTHO05D008728 1.0e-134 484.2 420 61.0
Gorai.001G256400 Gossypium raimondii HOM05D006074 ORTHO05D008728 1.3e-134 483.8 463 57.7
MELO3C009883.2 Cucumis melo HOM05D006074 ORTHO05D008728 6.5e-134 481.5 355 69.0
Aqoxy3G03321 Aquilegia oxysepala HOM05D006074 ORTHO05D008728 1.5e-133 480.3 423 59.1
ATR0564G024 Amborella trichopoda HOM05D006074 ORTHO05D008728 1.9e-133 479.9 360 66.4
Lju41C23G10 Lonicera japonica HOM05D006074 ORTHO05D008728 7.2e-133 478.0 407 61.7
AT3G28760 Arabidopsis thaliana HOM05D006074 ORTHO05D008728 9.4e-133 477.6 432 60.0
BcaC06g30896 Brassica carinata HOM05D006074 ORTHO05D008728 1.2e-132 477.2 366 66.7
Eucgr.J01218 Eucalyptus grandis HOM05D006074 ORTHO05D008728 2.1e-132 476.5 428 58.6
BraA06t26953Z Brassica rapa HOM05D006074 ORTHO05D008728 3.6e-132 475.7 414 60.1
Carub.0005s0731 Capsella rubella HOM05D006074 ORTHO05D008728 3.6e-132 475.7 367 66.5
arahy.Tifrunner.gnm1.ann1.V4TPJI Arachis hypogaea HOM05D006074 ORTHO05D008728 4.7e-132 475.3 376 65.7
BolC7t44287H Brassica oleracea HOM05D006074 ORTHO05D008728 8.0e-132 474.6 417 60.9
arahy.Tifrunner.gnm1.ann1.1Y4ZQN Arachis hypogaea HOM05D006074 ORTHO05D008728 1.4e-131 473.8 353 68.6
Gohir.D07G222100 Gossypium hirsutum HOM05D006074 ORTHO05D008728 1.4e-131 473.8 429 60.1
COL.COLO4_36112 Corchorus olitorius HOM05D006074 ORTHO05D008728 1.8e-131 473.4 342 70.5
C07p37700 Brassica napus HOM05D006074 ORTHO05D008728 4.0e-131 472.2 380 64.7
A06p40350 Brassica napus HOM05D006074 ORTHO05D008728 6.7e-131 471.5 369 65.0
Aa31LG2G4460 Aethionema arabicum HOM05D006074 ORTHO05D008728 8.8e-131 471.1 398 61.8
Migut.H00904 Erythranthe guttata HOM05D006074 ORTHO05D008728 2.0e-130 469.9 355 67.0
Lsat_1_v5_gn_4_177200 Lactuca sativa HOM05D006074 ORTHO05D008728 3.3e-130 469.2 425 58.8
BcaC06g33639 Brassica carinata HOM05D006074 ORTHO05D008728 5.7e-130 468.4 417 60.4
Sed0009974 Sechium edule HOM05D006074 ORTHO05D008728 9.7e-130 467.6 420 61.0
HanXRQChr09g0265461 Helianthus annuus HOM05D006074 ORTHO05D008728 1.3e-129 467.2 380 64.2
AL5G18490 Arabidopsis lyrata HOM05D006074 ORTHO05D008728 2.8e-129 466.1 370 65.1
VMungo0464G0585 Vigna mungo HOM05D006074 ORTHO05D008728 6.3e-129 464.9 380 65.0
Sc14g0005980 Simmondsia chinensis HOM05D006074 ORTHO05D008728 8.2e-129 464.5 355 67.6
SalBow1G4287 Salvia bowleyana HOM05D006074 ORTHO05D008728 1.2e-127 460.7 354 66.1
CSS0026374 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 7.7e-127 458.0 361 65.9
Atru.BG.207.p Acer truncatum HOM05D006074 ORTHO05D008728 3.8e-126 455.7 351 67.0
EL10Ac2g02949 Beta vulgaris HOM05D006074 ORTHO05D008728 1.1e-125 454.1 420 58.1
CAN.G579.8 Capsicum annuum HOM05D006074 ORTHO05D008728 1.1e-125 454.1 410 58.5
Glyma.19G020800 Glycine max HOM05D006074 ORTHO05D008728 1.5e-125 453.8 381 63.5
Sopen03g012680 Solanum pennellii HOM05D006074 ORTHO05D008728 1.5e-125 453.8 354 65.5
CSS0037615 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 9.4e-125 451.1 359 65.2
PGSC0003DMG400009217 Solanum tuberosum HOM05D006074 ORTHO05D008728 2.7e-124 449.5 354 64.7
Dinv33738 Davidia involucrata HOM05D006074 ORTHO05D008728 8.0e-124 448.0 431 57.8
Solyc03g058860.3 Solanum lycopersicum HOM05D006074 ORTHO05D008728 8.0e-124 448.0 354 64.7
AUR62031615 Chenopodium quinoa HOM05D006074 ORTHO05D008728 3.4e-122 442.6 420 57.1
ECA232G4667 Erigeron canadensis HOM05D006074 ORTHO05D008728 5.7e-122 441.8 346 66.8
Nn4g23084 Nelumbo nucifera HOM05D006074 ORTHO05D008728 9.8e-122 441.0 338 67.2
AUR62038861 Chenopodium quinoa HOM05D006074 ORTHO05D008728 1.7e-121 440.3 420 56.9
Os03g0170300 Oryza sativa ssp. japonica HOM05D006074 ORTHO05D008728 1.6e-119 433.7 356 63.2
Cc07_g03180 Coffea canephora HOM05D006074 ORTHO05D008728 7.7e-119 431.4 352 64.8
Hund15626 Selenicereus undatus HOM05D006074 ORTHO05D008728 6.5e-118 428.3 359 64.1
Zm00001eb402270 Zea mays HOM05D006074 ORTHO05D008728 9.4e-117 424.5 353 63.5
DCAR_021653 Daucus carota HOM05D006074 ORTHO05D008728 1.6e-116 423.7 366 59.3
TPR.G10370 Trifolium pratense HOM05D006074 ORTHO05D008728 1.6e-116 423.7 314 69.1
Nitab4.5_0000002g0350 Nicotiana tabacum HOM05D006074 ORTHO05D008728 4.9e-113 412.1 360 60.3
Nitab4.5_0003081g0050 Nicotiana tabacum HOM05D006074 ORTHO05D008728 8.3e-113 411.4 360 61.1
Ca_04272_v3 Cicer arietinum L. HOM05D006074 ORTHO05D008728 2.9e-110 402.9 317 67.2
Manes.15G177000 Manihot esculenta HOM05D006074 ORTHO05D008728 2.3e-107 393.3 273 72.2
Peaxi162Scf00451g00822 Petunia axillaris HOM05D006074 ORTHO05D008728 2.6e-106 389.8 304 67.1
SGA_v2.0_scaffold59G20672 Striga asiatica HOM05D006074 ORTHO05D008728 2.6e-106 389.8 316 63.0
Thhalv10004593m.g Eutrema salsugineum HOM05D006074 ORTHO05D008728 3.7e-105 386.0 321 62.6
Pp3c9_19570 Physcomitrium patens HOM05D006074 ORTHO05D008728 2.4e-96 356.7 380 51.8
AagrBONN_evm.TU.Sc2ySwM_228.462 Anthoceros agrestis HOM05D006074 ORTHO05D008728 2.7e-95 353.2 354 52.5
Pp3c10_1080 Physcomitrium patens HOM05D006074 ORTHO05D008728 6.2e-92 342.0 358 51.1
Mapoly0005s0075 Marchantia polymorpha HOM05D006074 ORTHO05D008728 1.0e-86 324.7 346 49.7
Ciclev10012867m.g Citrus clementina HOM05D006074 ORTHO05D008728 8.9e-83 311.6 186 82.8
Glyma.13G064100 Glycine max HOM05D006074 ORTHO05D008728 3.9e-78 296.2 250 64.0
FAN14G0759 Fragaria x ananassa HOM05D006074 ORTHO05D008728 5.1e-78 295.8 444 44.1
unitig_21.g20922 Utricularia gibba HOM05D006074 ORTHO05D008728 8.4e-73 278.5 277 53.1
CDE02G2631 Ceratophyllum demersum HOM05D006074 ORTHO05D008728 3.5e-71 273.1 256 55.1
Pp3c15_19890 Physcomitrium patens HOM05D006074 ORTHO05D008728 3.9e-70 269.6 371 43.4
Lsat_1_v5_gn_4_177220 Lactuca sativa HOM05D006074 ORTHO05D008728 3.9e-62 243.0 166 72.3
MCO08G127 Micromonas commoda HOM05D006074 ORTHO05D008728 1.3e-60 238.0 362 42.0
Pp3c1_20750 Physcomitrium patens HOM05D006074 ORTHO05D020966 1.2e-58 231.5 410 35.6
Pp3c1_20753 Physcomitrium patens HOM05D006074 ORTHO05D020966 1.2e-58 231.5 410 35.6
SEGI_14685 Sequoiadendron giganteum HOM05D006074 ORTHO05D008728 2.2e-57 227.3 183 62.8
Pp3c2_18540 Physcomitrium patens HOM05D006074 ORTHO05D020966 1.2e-55 221.5 411 34.1
CARHR151760 Cardamine hirsuta HOM05D006074 ORTHO05D008728 1.0e-54 218.4 284 46.5
Cre05.g248250 Chlamydomonas reinhardtii HOM05D006074 ORTHO05D008728 1.3e-46 191.4 347 38.9
Pp3c10_2120 Physcomitrium patens HOM05D006074 ORTHO05D020966 5.1e-46 189.5 517 27.9
PRCOL_00003957 Prasinoderma coloniale HOM05D006074 ORTHO05D008728 8.7e-46 188.7 350 37.7
Lsat_1_v5_gn_0_26800 Lactuca sativa HOM05D006074 ORTHO05D008728 1.4e-40 171.4 146 57.5
Haze_18216 Corylus avellana HOM05D000132 ORTHO05D000058 1.3e-38 164.9 152 57.2
Lsat_1_v5_gn_3_53141 Lactuca sativa HOM05D006074 ORTHO05D008728 2.4e-35 154.1 119 60.5
Atru.chr3.96 Acer truncatum HOM05D006074 ORTHO05D026256 2.0e-21 107.8 68 75.0
Pp3c23_20410 Physcomitrium patens HOM05D006074 ORTHO05D026055 2.2e-17 94.4 177 35.0
Actinidia17537 Actinidia chinensis HOM05D006074 ORTHO05D026256 8.5e-17 92.4 68 67.6
CDE02G1972 Ceratophyllum demersum HOM05D006074 ORTHO05D026256 1.9e-16 91.3 65 66.2
Pp3c20_4730 Physcomitrium patens HOM05D006074 ORTHO05D026055 5.5e-16 89.7 167 35.9
Pp3c8_20190 Physcomitrium patens HOM05D006074 ORTHO05D026055 4.0e-14 83.6 180 32.8
Pp3c20_10280 Physcomitrium patens HOM05D006074 ORTHO05D026055 3.7e-12 77.0 207 28.0
Sabra17G0081400 Salix brachista HOM05D006074 ORTHO05D008728 3.1e-11 73.9 55 67.3
HanXRQChr09g0253281 Helianthus annuus HOM05D006074 ORTHO05D008728 5.9e-10 69.7 50 74.0
PGSC0003DMG400013970 Solanum tuberosum HOM05D006074 ORTHO05D008728 3.8e-09 67.0 50 56.0
MD15G1234700 Malus domestica HOM05D006074 ORTHO05D248841 6.5e-09 66.2 48 58.3
SEGI_18941 Sequoiadendron giganteum HOM05D006074 ORTHO05D026256 6.1e-07 59.7 49 61.2


User provided reference genes

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