Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 7.8e-297 1023.1 537 100.0
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 3.9e-139 499.2 538 54.5
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 1.4e-136 490.7 543 51.4
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 4.5e-135 485.7 542 50.6
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 5.9e-135 485.3 522 52.3
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.9e-133 480.3 533 51.2
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 5.5e-133 478.8 544 51.7
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 7.7e-127 458.4 527 49.5
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 1.9e-125 453.8 525 48.4
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 1.2e-122 444.5 553 47.6
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 9.8e-122 441.4 543 48.4
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 2.9e-118 429.9 533 47.7
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 5.0e-118 429.1 542 47.6
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 6.5e-118 428.7 535 46.0
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 3.2e-117 426.4 545 47.2
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 5.5e-117 425.6 419 54.4
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 4.7e-116 422.5 546 47.3
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 4.7e-116 422.5 546 47.3
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 4.7e-116 422.5 532 47.7
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 8.0e-116 421.8 539 46.9
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 3.0e-115 419.9 537 46.2
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 3.1e-112 409.8 530 45.1
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.2e-111 407.9 547 44.6
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 2.7e-111 406.8 538 44.4
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 3.8e-110 402.9 541 44.2
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 1.1e-109 401.4 546 45.6
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 3.6e-108 396.4 540 43.7
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 4.7e-108 396.0 540 43.5
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 4.4e-106 389.4 459 48.6
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 2.9e-105 386.7 532 45.7
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 3.2e-104 383.3 522 45.0
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 9.2e-104 381.7 529 44.8
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 4.6e-103 379.4 504 46.2
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 1.3e-102 377.9 472 46.4
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 3.9e-102 376.3 527 43.6
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 9.5e-101 371.7 528 43.8
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 1.4e-99 367.9 526 43.0
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.3e-99 367.1 465 45.4
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 6.8e-99 365.5 465 45.4
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 8.9e-99 365.2 530 44.0
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.5e-98 364.4 532 42.1
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 4.4e-98 362.8 528 44.5
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.3e-97 361.3 541 41.6
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.4e-96 357.8 486 43.8
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 1.4e-96 357.8 543 41.6
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 4.6e-95 352.8 534 41.4
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 1.3e-94 351.3 536 41.2
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 3.0e-94 350.1 534 41.0
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 8.6e-94 348.6 498 41.0
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 1.5e-93 347.8 537 41.3
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.5e-93 347.8 529 40.1
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 1.9e-93 347.4 529 39.9
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 7.3e-93 345.5 528 42.6
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 1.5e-90 337.8 526 42.6
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 1.7e-89 334.3 531 39.9
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.7e-89 334.3 473 42.1
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 4.1e-88 329.7 535 39.4
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 1.5e-85 321.2 539 42.7
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 1.8e-83 314.3 538 39.8
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 1.5e-82 311.2 533 38.5
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 7.6e-82 308.9 528 37.5
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 4.1e-80 303.1 531 38.6
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 7.8e-79 298.9 530 38.9
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.3e-78 298.1 537 38.5
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 6.6e-78 295.8 529 38.8
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 3.3e-77 293.5 537 38.9
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 7.3e-77 292.4 498 37.6
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.1e-76 290.8 529 38.4
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 3.6e-76 290.0 486 38.1
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 2.4e-75 287.3 524 38.2
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 1.2e-74 285.0 520 38.3
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 2.4e-72 277.3 524 38.2
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 9.3e-72 275.4 530 37.4
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 1.6e-71 274.6 523 36.9
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 2.1e-71 274.2 495 38.0
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 1.3e-70 271.6 525 37.1
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 3.9e-70 270.0 528 35.2
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 5.1e-70 269.6 539 34.7
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 5.6e-69 266.2 521 35.7
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 9.6e-69 265.4 269 50.6
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 9.6e-69 265.4 269 50.6
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 9.6e-69 265.4 286 49.3
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 2.8e-68 263.8 487 35.5
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 3.6e-68 263.5 529 36.9
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 2.4e-67 260.8 491 36.3
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 4.0e-67 260.0 491 35.8
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 4.0e-67 260.0 428 39.3
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 5.3e-67 259.6 527 35.7
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 1.2e-66 258.5 506 35.2
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.6e-66 257.3 380 41.3
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 2.6e-66 257.3 442 38.0
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 2.6e-66 257.3 519 34.9
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 3.4e-66 256.9 484 38.0
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 4.2e-64 250.0 506 34.2
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 4.2e-64 250.0 380 40.5
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 7.1e-64 249.2 508 34.3
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 1.6e-63 248.1 388 38.1
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.8e-62 244.6 433 37.2
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 1.9e-61 241.1 275 50.2
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 1.6e-60 238.0 512 34.2
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 2.8e-60 237.3 512 33.8
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 6.2e-60 236.1 540 35.2
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 1.1e-59 235.3 489 34.2
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 3.1e-59 233.8 495 32.7
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 5.3e-59 233.0 507 33.1
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 1.2e-58 231.9 561 34.2
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 1.1e-56 225.3 492 32.7
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 2.4e-56 224.2 495 33.9
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 3.2e-56 223.8 503 32.6
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 4.2e-56 223.4 496 32.3
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 9.3e-56 222.2 581 31.3
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 2.1e-55 221.1 496 31.9
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 1.0e-54 218.8 517 35.2
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 1.3e-54 218.4 469 34.1
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 1.3e-54 218.4 379 37.7
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 1.8e-54 218.0 504 32.1
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 2.3e-54 217.6 505 32.5
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 2.3e-54 217.6 505 32.5
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 3.9e-54 216.9 418 33.3
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 6.7e-54 216.1 506 32.8
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.9e-53 214.5 439 35.3
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 1.6e-52 211.5 523 33.5
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 2.1e-52 211.1 474 33.1
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 9.0e-51 205.7 270 44.4
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.2e-50 205.3 292 44.2
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 2.6e-50 204.1 396 35.9
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 2.6e-50 204.1 558 29.4
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 1.3e-49 201.8 285 41.4
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 3.8e-49 200.3 505 30.7
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 2.7e-47 194.1 512 30.5
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 7.9e-47 192.6 517 33.7
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.1e-45 188.7 261 45.6
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 1.5e-45 188.3 295 40.7
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 3.3e-45 187.2 549 29.3
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.6e-44 184.9 231 45.5
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 1.8e-43 181.4 408 33.6
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 1.5e-42 178.3 477 30.4
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 4.5e-42 176.8 480 29.6
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 3.8e-41 173.7 412 31.6
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 8.5e-41 172.6 433 30.5
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 1.4e-40 171.8 399 32.8
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 3.2e-40 170.6 264 41.3
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 4.2e-40 170.2 249 38.6
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 5.5e-40 169.9 274 42.7
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 7.2e-40 169.5 470 30.4
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 2.1e-39 167.9 253 40.7
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 3.6e-39 167.2 502 30.1
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 1.8e-38 164.9 491 29.9
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 2.5e-37 161.0 498 29.5
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 3.7e-36 157.1 478 30.1
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 4.1e-35 153.7 300 38.0
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 5.9e-34 149.8 482 29.7
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 1.3e-33 148.7 481 28.9
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 1.4e-32 145.2 479 28.6
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 9.4e-32 142.5 263 37.3
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 6.3e-28 129.8 152 47.4
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 6.9e-27 126.3 152 46.7
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 1.2e-26 125.6 273 34.4
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 1.5e-26 125.2 289 32.5
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 4.2e-24 117.1 254 31.9
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 7.2e-24 116.3 490 27.1
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 1.2e-23 115.5 260 36.9
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 4.7e-23 113.6 153 43.1
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 4.7e-23 113.6 255 32.2
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.7e-20 105.1 238 33.6
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 2.2e-20 104.8 209 32.5
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 6.3e-20 103.2 129 45.7
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 5.3e-19 100.1 278 29.9
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 1.0e-17 95.9 253 30.4
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 5.0e-17 93.6 201 34.3
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 1.1e-16 92.4 117 37.6
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 2.4e-11 74.7 126 38.1
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 5.3e-11 73.6 284 27.1
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 1.1e-08 65.9 105 37.1


User provided reference genes

Program Settings