Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 8.3e-49 196.8 106 100.0
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 9.5e-29 130.2 106 70.8
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 1.5e-26 122.9 107 67.3
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 2.0e-26 122.5 105 68.6
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 7.5e-26 120.6 109 63.3
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 9.8e-26 120.2 107 64.5
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.7e-25 119.4 106 62.3
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 2.4e-24 115.5 107 63.6
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 3.2e-24 115.2 103 60.2
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 1.7e-22 109.4 106 56.6
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 1.7e-22 109.4 108 54.6
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 2.3e-22 109.0 109 60.6
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 3.0e-22 108.6 104 57.7
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 5.0e-22 107.8 109 56.0
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 6.6e-22 107.5 106 55.7
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 1.5e-21 106.3 105 61.0
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 1.9e-21 105.9 104 51.9
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 2.5e-21 105.5 106 62.3
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.5e-21 105.5 106 62.3
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.5e-21 105.5 107 54.2
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.5e-21 105.5 107 54.2
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 3.3e-21 105.1 104 54.8
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 3.3e-21 105.1 104 55.8
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 3.3e-21 105.1 106 56.6
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 7.3e-21 104.0 110 58.2
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 7.3e-21 104.0 107 59.8
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 7.3e-21 104.0 106 61.3
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 7.3e-21 104.0 106 53.8
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 1.6e-20 102.8 108 51.9
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 1.6e-20 102.8 105 51.4
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 2.1e-20 102.4 110 60.9
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 2.1e-20 102.4 105 61.9
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 2.1e-20 102.4 106 54.7
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 2.8e-20 102.1 107 53.3
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 4.7e-20 101.3 106 60.4
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 4.7e-20 101.3 105 50.5
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 1.1e-19 100.1 107 50.5
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 1.1e-19 100.1 111 56.8
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 1.4e-19 99.8 104 48.1
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 1.4e-19 99.8 108 52.8
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 1.8e-19 99.4 104 48.1
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 2.3e-19 99.0 107 50.5
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 4.0e-19 98.2 111 50.5
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 5.2e-19 97.8 106 60.4
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 5.2e-19 97.8 108 56.5
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 5.2e-19 97.8 106 52.8
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 5.2e-19 97.8 106 54.7
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 6.8e-19 97.4 108 59.3
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 1.2e-18 96.7 106 56.6
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 1.5e-18 96.3 104 51.0
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 2.0e-18 95.9 107 47.7
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 2.6e-18 95.5 108 52.8
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 2.6e-18 95.5 108 52.8
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 2.6e-18 95.5 107 50.5
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 2.6e-18 95.5 112 52.7
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 4.4e-18 94.7 108 53.7
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 4.4e-18 94.7 107 56.1
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 5.8e-18 94.4 105 52.4
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 5.8e-18 94.4 108 51.9
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 9.8e-18 93.6 106 57.5
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 9.8e-18 93.6 108 50.9
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 1.3e-17 93.2 108 48.1
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 1.3e-17 93.2 108 53.7
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 1.3e-17 93.2 107 50.5
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 1.3e-17 93.2 107 59.8
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 2.2e-17 92.4 113 51.3
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 2.2e-17 92.4 106 51.9
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 2.2e-17 92.4 109 52.3
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 2.9e-17 92.0 109 52.3
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 2.9e-17 92.0 109 55.0
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 3.7e-17 91.7 103 49.5
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 4.9e-17 91.3 110 45.5
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 6.4e-17 90.9 109 53.2
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 6.4e-17 90.9 109 51.4
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 6.4e-17 90.9 111 52.3
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 8.3e-17 90.5 107 53.3
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 1.1e-16 90.1 107 53.3
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 1.9e-16 89.4 108 50.9
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 2.4e-16 89.0 109 50.5
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 2.4e-16 89.0 112 55.4
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 3.2e-16 88.6 110 49.1
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 3.2e-16 88.6 109 52.3
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 4.1e-16 88.2 109 54.1
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 4.1e-16 88.2 109 54.1
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 4.1e-16 88.2 105 49.5
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 4.1e-16 88.2 109 53.2
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 5.4e-16 87.8 108 50.9
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 5.4e-16 87.8 109 49.5
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 5.4e-16 87.8 107 51.4
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 9.2e-16 87.0 110 43.6
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 9.2e-16 87.0 107 51.4
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 9.2e-16 87.0 107 51.4
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 9.2e-16 87.0 106 49.1
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 1.6e-15 86.3 108 50.0
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 1.6e-15 86.3 106 55.7
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 3.5e-15 85.1 103 44.7
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 3.5e-15 85.1 110 45.5
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 4.6e-15 84.7 109 50.5
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 4.6e-15 84.7 109 50.5
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 4.6e-15 84.7 109 50.5
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 6.0e-15 84.3 110 47.3
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 1.3e-14 83.2 109 49.5
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 1.7e-14 82.8 107 48.6
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 1.7e-14 82.8 107 48.6
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 1.7e-14 82.8 107 48.6
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 3.0e-14 82.0 107 49.5
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 3.9e-14 81.6 108 47.2
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 5.1e-14 81.3 111 50.5
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 5.1e-14 81.3 110 45.5
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 5.1e-14 81.3 94 53.2
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 6.6e-14 80.9 112 48.2
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 8.6e-14 80.5 114 47.4
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 8.6e-14 80.5 106 44.3
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 1.9e-13 79.3 108 51.9
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 4.3e-13 78.2 110 48.2
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 7.3e-13 77.4 102 45.1
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 9.5e-13 77.0 95 50.5
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 1.2e-12 76.6 104 43.3
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 1.2e-12 76.6 104 49.0
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 1.6e-12 76.3 109 46.8
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 1.6e-12 76.3 109 51.4
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.6e-12 76.3 110 46.4
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.6e-12 76.3 110 46.4
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 4.7e-12 74.7 110 51.8
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 6.2e-12 74.3 102 44.1
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 6.2e-12 74.3 107 52.3
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 1.1e-11 73.6 76 52.6
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 1.1e-11 73.6 107 46.7
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.8e-11 72.8 108 45.4
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 1.8e-11 72.8 107 43.9
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 2.3e-11 72.4 107 41.1
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 4.0e-11 71.6 110 50.0
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 5.2e-11 71.2 112 50.0
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 5.2e-11 71.2 108 42.6
Lalb_Chr01g0000351 Lupinus albus HOM05D004268 ORTHO05D004958 2.6e-10 68.9 108 45.4
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 4.4e-10 68.2 36 83.3
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 7.6e-10 67.4 64 51.6
A01p33800 Brassica napus HOM05D004268 ORTHO05D004958 1.3e-09 66.6 109 47.7
Actinidia16340 Actinidia chinensis HOM05D004268 ORTHO05D004958 1.7e-09 66.2 96 50.0
Migut.D00609 Erythranthe guttata HOM05D004268 ORTHO05D004958 1.7e-09 66.2 41 78.0
Nitab4.5_0004438g0050 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.7e-09 66.2 108 46.3
BraA01t03491Z Brassica rapa HOM05D004268 ORTHO05D004958 2.2e-09 65.9 109 47.7
BolC1t04268H Brassica oleracea HOM05D004268 ORTHO05D004958 4.9e-09 64.7 109 49.5
PGSC0003DMG400010498 Solanum tuberosum HOM05D004268 ORTHO05D004958 6.4e-09 64.3 92 42.4
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 8.4e-09 63.9 38 78.9
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 8.4e-09 63.9 119 38.7
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 1.1e-08 63.5 75 46.7
Nitab4.5_0002741g0110 Nicotiana tabacum HOM05D004268 ORTHO05D004958 3.2e-08 62.0 41 70.7
PGSC0003DMG400019098 Solanum tuberosum HOM05D004268 ORTHO05D004958 3.2e-08 62.0 119 38.7
Aqoxy1G00277 Aquilegia oxysepala HOM05D004268 ORTHO05D004958 4.1e-08 61.6 37 75.7
Rhsim01G0129200 Rhododendron simsii HOM05D000074 ORTHO05D004958 5.4e-08 61.2 99 45.5
PGSC0003DMG400004639 Solanum tuberosum HOM05D004268 ORTHO05D004958 7.1e-08 60.8 109 45.0
Sp3g19010 Schrenkiella parvula HOM05D004268 ORTHO05D004958 9.2e-08 60.5 109 44.0
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 1.2e-07 60.1 117 33.3
Potri.001G265000 Populus trichocarpa HOM05D004268 ORTHO05D004958 2.1e-07 59.3 88 43.2
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 2.7e-07 58.9 70 44.3
BraA06t23458Z Brassica rapa HOM05D004268 ORTHO05D004958 2.7e-07 58.9 38 73.7
Zm00001eb245320 Zea mays HOM05D004268 ORTHO05D004958 3.5e-07 58.5 107 43.0
A03p42000 Brassica napus HOM05D004268 ORTHO05D004958 1.0e-06 57.0 109 42.2
Solyc12g099650.2 Solanum lycopersicum HOM05D004268 ORTHO05D004958 1.7e-06 56.2 110 41.8
BcaB04g20616 Brassica carinata HOM05D004268 ORTHO05D004958 3.0e-06 55.5 109 43.1
HanXRQChr13g0401101 Helianthus annuus HOM05D004268 ORTHO05D004958 3.0e-06 55.5 110 40.9
Hma1.2p1_0495F.1_g165730 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 5.1e-06 54.7 37 59.5
Nitab4.5_0000570g0060 Nicotiana tabacum HOM05D004268 ORTHO05D004958 5.1e-06 54.7 107 41.1
CSS0020424 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 8.6e-06 53.9 107 39.3


User provided reference genes

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