Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 8.4e-196 686.8 339 100.0
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 1.6e-122 443.4 332 67.8
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 6.2e-122 441.4 337 66.8
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 1.4e-121 440.3 336 66.4
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 3.4e-120 435.6 334 67.4
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 4.4e-120 435.3 328 66.5
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 8.3e-119 431.0 332 65.7
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 1.9e-118 429.9 341 64.8
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 4.1e-118 428.7 333 64.6
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 5.4e-118 428.3 337 65.0
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 6.0e-117 424.9 337 64.7
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 5.0e-116 421.8 331 64.7
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 1.5e-115 420.2 335 64.8
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 4.3e-115 418.7 337 63.5
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 7.3e-115 417.9 328 64.3
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.8e-114 416.0 337 62.9
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 8.1e-114 414.5 338 63.0
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 8.1e-114 414.5 335 63.3
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 4.0e-113 412.1 336 63.1
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 5.2e-113 411.8 333 63.4
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 8.9e-113 411.0 335 63.3
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 8.9e-113 411.0 337 62.0
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.2e-112 410.6 333 62.2
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.4e-112 409.1 333 63.4
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 1.3e-111 407.1 328 65.2
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 4.9e-111 405.2 329 61.7
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 1.2e-109 400.6 333 61.9
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.6e-109 400.2 330 60.3
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 6.0e-109 398.3 330 60.9
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 5.1e-108 395.2 330 60.3
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.1e-107 394.0 330 60.0
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 1.1e-107 394.0 284 71.8
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 2.5e-107 392.9 342 61.7
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 9.5e-107 391.0 336 61.0
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 2.1e-106 389.8 343 57.1
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 2.8e-106 389.4 326 63.5
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 4.7e-106 388.7 334 60.2
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 1.1e-105 387.5 327 62.7
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 1.8e-105 386.7 338 61.8
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 3.1e-105 386.0 333 60.4
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 8.9e-105 384.4 326 61.7
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 2.6e-104 382.9 338 61.2
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 5.8e-104 381.7 326 62.0
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 7.6e-104 381.3 320 63.1
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 2.9e-103 379.4 333 59.5
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 1.1e-102 377.5 335 57.9
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 3.2e-102 375.9 298 65.4
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 5.4e-102 375.2 356 56.7
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.1e-101 373.2 326 59.8
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 2.7e-101 372.9 327 58.4
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 6.0e-101 371.7 330 59.4
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.7e-100 370.2 330 59.1
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.7e-100 370.2 325 58.5
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.0e-100 369.4 330 58.8
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 1.1e-99 367.5 329 59.9
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 3.3e-99 365.9 330 59.4
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 9.6e-99 364.4 346 56.4
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 9.6e-99 364.4 325 56.6
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.6e-98 363.6 355 56.1
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 3.6e-98 362.5 325 57.8
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 3.6e-98 362.5 331 57.1
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.1e-97 360.9 325 57.2
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.4e-97 360.5 332 57.2
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 1.4e-97 360.5 342 55.0
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 2.4e-97 359.8 323 56.3
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 5.3e-97 358.6 328 58.5
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 6.9e-97 358.2 331 55.3
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 9.0e-97 357.8 256 69.1
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 2.0e-96 356.7 295 63.4
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.6e-96 356.3 323 58.5
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 3.4e-96 355.9 325 58.2
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 4.4e-96 355.5 323 58.8
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 5.8e-96 355.1 323 57.6
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 7.6e-96 354.8 330 58.8
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 7.6e-96 354.8 334 58.4
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 9.9e-96 354.4 331 55.0
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 9.9e-96 354.4 325 57.8
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.3e-95 354.0 334 58.4
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.3e-95 354.0 323 57.9
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 1.3e-95 354.0 325 59.4
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.9e-95 352.8 331 56.2
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 2.9e-95 352.8 326 56.1
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 6.4e-95 351.7 336 56.2
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 8.4e-95 351.3 306 58.5
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.9e-94 350.1 334 57.2
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 2.4e-94 349.7 327 56.9
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 9.3e-94 347.8 314 59.9
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 1.6e-93 347.1 328 56.4
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.6e-93 347.1 334 56.6
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 2.1e-93 346.7 330 55.8
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 2.1e-93 346.7 331 53.5
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 2.7e-93 346.3 328 57.0
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 4.6e-93 345.5 335 54.3
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 6.0e-93 345.1 320 55.6
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 2.3e-92 343.2 292 60.3
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 3.0e-92 342.8 335 53.1
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 6.6e-92 341.7 336 52.4
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 8.7e-92 341.3 292 59.6
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 8.7e-92 341.3 339 52.5
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 1.5e-91 340.5 339 55.2
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 1.9e-91 340.1 292 59.6
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 2.5e-91 339.7 292 59.6
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 3.3e-91 339.3 339 52.2
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 3.3e-91 339.3 334 52.4
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 3.3e-91 339.3 296 60.5
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 3.3e-91 339.3 292 61.0
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 4.3e-91 339.0 329 54.1
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 4.3e-91 339.0 333 56.2
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 5.6e-91 338.6 292 58.9
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 7.3e-91 338.2 343 53.9
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 7.3e-91 338.2 339 54.6
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.3e-90 337.4 329 56.8
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 2.1e-90 336.7 336 54.2
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 2.1e-90 336.7 290 60.7
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 2.1e-90 336.7 339 52.2
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.1e-89 334.3 292 58.6
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 1.4e-89 334.0 289 58.8
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 1.4e-89 334.0 289 58.8
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 1.4e-89 334.0 345 53.9
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 1.4e-89 334.0 290 60.7
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 3.1e-89 332.8 334 52.7
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 5.3e-89 332.0 293 59.0
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 6.9e-89 331.6 305 57.7
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 9.0e-89 331.3 343 51.9
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 1.2e-88 330.9 333 52.9
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.5e-88 330.5 289 59.2
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 2.0e-88 330.1 289 58.5
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 2.0e-88 330.1 291 59.1
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 3.4e-88 329.3 289 58.5
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 4.5e-88 328.9 337 53.4
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 5.8e-88 328.6 247 66.0
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.2e-87 326.6 329 53.2
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 1.1e-86 324.3 290 60.0
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 1.1e-86 324.3 278 58.6
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 9.3e-86 321.2 328 50.9
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 6.0e-85 318.5 296 58.1
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 5.6e-83 312.0 293 57.7
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 5.6e-83 312.0 293 57.7
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 4.0e-81 305.8 300 53.7
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 1.3e-79 300.8 363 48.8
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 4.6e-77 292.4 286 55.6
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 6.0e-77 292.0 251 59.4
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 1.1e-75 287.7 242 58.3
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 1.4e-73 280.8 247 56.3
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 1.4e-73 280.8 294 52.4
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 1.8e-73 280.4 249 57.0
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 1.9e-70 270.4 312 47.1
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 3.2e-70 269.6 301 46.8
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 4.6e-69 265.8 273 52.7
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 7.9e-69 265.0 243 57.2
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 6.7e-68 261.9 245 51.0
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 2.5e-67 260.0 287 50.2
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 4.3e-67 259.2 250 53.6
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 1.3e-63 247.7 157 75.8
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 6.7e-60 235.3 180 60.6
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 2.2e-58 230.3 157 68.8
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 1.9e-54 217.2 237 51.9
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 7.2e-54 215.3 247 47.8
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 4.7e-53 212.6 161 64.0
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 6.1e-53 212.2 203 53.2
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 8.2e-50 201.8 290 45.2
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.1e-49 199.5 153 67.3
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 2.0e-43 180.6 226 46.9
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 7.4e-43 178.7 236 44.1
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 1.9e-38 164.1 267 37.1
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 4.2e-38 162.9 173 52.0
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 3.8e-31 139.8 128 63.3
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 2.1e-29 134.0 89 73.0
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.0e-28 130.2 79 81.0
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 4.8e-26 122.9 96 64.6
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 1.8e-25 120.9 117 49.6
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 1.3e-23 114.8 81 67.9
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 6.8e-20 102.4 83 61.4
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 7.5e-19 99.0 77 64.9
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.8e-12 77.8 56 64.3
Ciclev10027336m.g Citrus clementina HOM05D003303 ORTHO05D003887 9.5e-06 55.5 114 35.1


User provided reference genes

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