Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 0.0e+00 1201.4 609 100.0
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 5.6e-307 1057.0 609 88.7
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 3.9e-268 927.9 621 77.1
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 5.1e-268 927.5 619 76.7
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 2.8e-266 921.8 621 76.7
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 1.4e-265 919.5 640 75.2
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 2.4e-265 918.7 623 76.7
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 9.3e-262 906.7 613 77.3
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 1.1e-259 899.8 615 75.8
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 5.6e-259 897.5 635 74.2
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 6.2e-258 894.0 621 73.9
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 6.2e-258 894.0 621 75.4
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 1.2e-256 889.8 618 75.1
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 7.6e-256 887.1 637 73.5
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 2.2e-255 885.6 618 75.9
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 1.9e-254 882.5 624 73.1
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 3.2e-254 881.7 616 74.4
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 1.6e-253 879.4 617 74.4
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 1.6e-253 879.4 648 71.5
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 3.5e-253 878.2 616 74.0
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 1.8e-252 875.9 618 74.9
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 8.7e-252 873.6 616 75.0
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 2.1e-250 869.0 635 71.8
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 2.1e-250 869.0 635 71.8
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 1.4e-249 866.3 618 73.5
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.8e-249 865.9 615 74.0
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 5.3e-249 864.4 632 72.3
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 1.5e-248 862.8 617 73.3
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 1.5e-248 862.8 652 70.1
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 1.5e-248 862.8 640 70.6
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 5.8e-248 860.9 615 73.8
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 1.0e-247 860.1 619 73.0
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 2.9e-247 858.6 631 71.9
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 6.5e-247 857.4 615 73.3
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 4.2e-246 854.7 632 72.0
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 5.5e-246 854.4 617 72.9
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 9.3e-246 853.6 618 73.1
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 3.5e-245 851.7 615 73.0
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 4.6e-245 851.3 615 73.0
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 1.0e-244 850.1 621 72.1
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 3.9e-244 848.2 618 72.7
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 4.3e-243 844.7 619 71.1
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 4.3e-243 844.7 612 72.4
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 7.4e-243 844.0 620 71.8
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 1.6e-242 842.8 625 70.6
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 4.8e-242 841.3 619 73.2
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 8.2e-242 840.5 620 71.0
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 2.4e-241 839.0 619 73.0
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 2.6e-240 835.5 612 71.7
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 2.6e-240 835.5 640 69.8
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 8.5e-239 830.5 624 70.8
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 1.8e-236 822.8 634 69.2
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 3.0e-236 822.0 624 70.7
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 8.8e-236 820.5 637 69.1
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 8.8e-236 820.5 764 60.5
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 1.3e-234 816.6 650 66.8
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 1.7e-231 806.2 636 67.5
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 5.0e-231 804.7 625 69.9
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 6.5e-231 804.3 636 67.1
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 8.5e-231 803.9 619 70.9
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 8.5e-231 803.9 631 66.4
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 4.2e-230 801.6 626 67.6
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 7.2e-230 800.8 617 68.1
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 2.1e-229 799.3 631 66.4
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 3.6e-229 798.5 575 71.3
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 2.6e-227 792.3 622 67.0
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 5.7e-227 791.2 619 67.5
Sed0004003 Sechium edule HOM05D004716 ORTHO05D005646 1.3e-226 790.0 506 78.5
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 5.3e-225 784.6 615 66.7
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 5.3e-225 784.6 616 69.0
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 9.1e-225 783.9 621 68.3
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 1.2e-224 783.5 624 66.7
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 2.2e-223 779.2 652 64.4
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 2.2e-223 779.2 639 64.5
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 1.5e-222 776.5 634 66.2
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 3.2e-222 775.4 625 65.4
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 7.2e-222 774.2 626 67.6
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 7.2e-222 774.2 628 65.0
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 9.4e-222 773.9 636 66.2
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 1.2e-221 773.5 616 66.2
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 1.2e-221 773.5 646 65.0
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 2.7e-221 772.3 610 67.2
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 4.7e-221 771.5 623 66.1
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 8.0e-221 770.8 610 67.0
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 3.0e-220 768.8 618 66.7
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 1.1e-219 766.9 636 65.9
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 2.0e-219 766.1 612 66.3
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 2.0e-219 766.1 612 66.3
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 8.2e-218 760.8 640 63.1
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 7.0e-217 757.7 612 66.5
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 9.1e-217 757.3 620 66.8
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 1.6e-216 756.5 621 65.4
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 3.5e-216 755.4 660 62.7
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 3.5e-216 755.4 616 64.8
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 4.5e-216 755.0 620 65.3
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 1.6e-213 746.5 639 62.0
Nn1g06102 Nelumbo nucifera HOM05D004716 ORTHO05D005646 2.7e-213 745.7 489 77.5
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 8.8e-212 740.7 646 62.7
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 1.2e-211 740.3 619 64.5
TPR.G36694 Trifolium pratense HOM05D004716 ORTHO05D005646 2.6e-211 739.2 575 68.3
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 3.7e-210 735.3 617 63.0
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 1.4e-209 733.4 651 61.4
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 6.8e-204 714.5 567 67.0
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 2.7e-200 702.6 633 60.3
CSS0049856 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 2.3e-199 699.5 457 76.6
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 2.9e-199 699.1 619 61.6
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 3.5e-192 675.6 614 60.1
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 3.3e-190 669.1 680 56.9
Cpa.g.sc21.190 Carica papaya HOM05D004716 ORTHO05D005646 1.0e-188 664.1 429 78.3
Zm00001eb422340 Zea mays HOM05D004716 ORTHO05D005646 5.2e-188 661.8 639 57.6
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 3.4e-187 659.1 621 58.3
Ca_25988_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.5e-179 633.6 397 78.1
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 3.4e-179 632.5 624 58.5
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 5.8e-179 631.7 822 46.4
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 1.9e-177 626.7 556 61.2
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 5.1e-175 618.6 628 56.1
Sc02g0004170 Simmondsia chinensis HOM05D004716 ORTHO05D005646 8.1e-173 611.3 453 69.3
Mapoly0014s0164 Marchantia polymorpha HOM05D004716 ORTHO05D005646 8.9e-172 607.8 659 50.8
ATR0772G093 Amborella trichopoda HOM05D004716 ORTHO05D005646 1.7e-170 603.6 459 67.5
SMO331G0079 Selaginella moellendorffii HOM05D004716 ORTHO05D005646 7.8e-168 594.7 613 53.0
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 4.7e-165 585.5 618 54.7
Oeu014493.1 Olea europaea HOM05D004716 ORTHO05D005646 2.3e-159 566.6 364 75.3
Pp3c5_6660 Physcomitrium patens HOM05D004716 ORTHO05D005646 8.7e-159 564.7 643 48.8
Pp3c6_18530 Physcomitrium patens HOM05D004716 ORTHO05D005646 1.9e-158 563.5 648 49.7
AagrBONN_evm.TU.Sc2ySwM_344.4417 Anthoceros agrestis HOM05D004716 ORTHO05D005646 2.4e-156 556.6 675 47.4
Psat6g193200 Pisum sativum HOM05D004716 ORTHO05D005646 2.4e-153 546.6 315 83.2
Psat6g193040 Pisum sativum HOM05D004716 ORTHO05D005646 1.4e-145 520.8 300 82.3
vmacro21155 Vaccinium macrocarpon HOM05D004716 ORTHO05D005646 2.1e-141 506.9 313 77.3
Zm00001eb422260 Zea mays HOM05D004716 ORTHO05D005646 1.7e-130 470.7 313 73.5
Os04g0421800 Oryza sativa ssp. japonica HOM05D004716 ORTHO05D005646 2.0e-123 447.2 299 72.2
CBR_g11170 Chara braunii HOM05D004716 ORTHO05D005646 2.5e-121 440.3 665 41.8
HanXRQChr10g0277841 Helianthus annuus HOM05D004716 ORTHO05D005646 3.9e-111 406.4 315 68.9
Zm00001eb422280 Zea mays HOM05D004716 ORTHO05D005646 1.7e-101 374.4 258 69.8
Zm00001eb422320 Zea mays HOM05D004716 ORTHO05D005646 1.7e-101 374.4 258 69.8
Actinidia10653 Actinidia chinensis HOM05D004716 ORTHO05D005646 2.9e-69 267.3 230 64.3
PRCOL_00002924 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 1.1e-57 228.8 430 35.8
VMungo0464G1352 Vigna mungo HOM05D004716 ORTHO05D005646 6.6e-50 203.0 247 52.6
Cpa.g.sc21.191 Carica papaya HOM05D004716 ORTHO05D005646 1.1e-47 195.7 168 69.0
ATR0772G018 Amborella trichopoda HOM05D004716 ORTHO05D005646 8.7e-34 149.4 197 51.3
CAN.G309.90 Capsicum annuum HOM05D004716 ORTHO05D005646 7.4e-33 146.4 178 48.3
Cre06.g286600 Chlamydomonas reinhardtii HOM05D004716 ORTHO05D005646 4.2e-28 130.6 379 30.9
Actinidia13988 Actinidia chinensis HOM05D004716 ORTHO05D005646 2.1e-27 128.3 87 69.0
Actinidia10651 Actinidia chinensis HOM05D004716 ORTHO05D005646 3.5e-27 127.5 161 52.2
PRCOL_00004133 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 1.0e-26 125.9 295 33.6
TAR636G3535 Trochodendron aralioides HOM05D004716 ORTHO05D005646 6.9e-23 113.2 92 71.7
Ca_25987_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 2.2e-21 108.2 137 54.0
CSS0021208 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 6.7e-18 96.7 138 47.1
Oeu014494.1 Olea europaea HOM05D004716 ORTHO05D005646 1.5e-17 95.5 148 43.2
HanXRQChr10g0277851 Helianthus annuus HOM05D004716 ORTHO05D005646 9.7e-17 92.8 116 52.6
SEGI_31186 Sequoiadendron giganteum HOM05D004716 ORTHO05D005646 1.2e-14 85.9 152 44.1
Psat6g193080 Pisum sativum HOM05D000257 ORTHO05D008537 2.3e-10 71.6 67 58.2
PGSC0003DMG401024092 Solanum tuberosum HOM05D004716 ORTHO05D005646 8.8e-10 69.7 160 33.8
Ca_26438_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 7.4e-09 66.6 139 39.6


User provided reference genes

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