Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI34G0930 Tripterygium wilfordii HOM05D005951 ORTHO05D007025 4.3e-130 468.0 236 100.0
Cpa.g.sc82.63 Carica papaya HOM05D005951 ORTHO05D007025 5.6e-114 414.5 238 87.4
Potri.006G136500 Populus trichocarpa HOM05D005951 ORTHO05D007025 3.6e-113 411.8 236 86.0
QL11p002956 Quercus lobata HOM05D005951 ORTHO05D007025 9.0e-112 407.1 235 86.8
Sabra06G0106700 Salix brachista HOM05D005951 ORTHO05D007025 9.0e-112 407.1 236 85.2
Potri.018G063600 Populus trichocarpa HOM05D005951 ORTHO05D007025 3.4e-111 405.2 239 84.5
Atru.chr7.1767 Acer truncatum HOM05D005951 ORTHO05D007025 5.8e-111 404.4 236 86.0
Duzib168G0975 Durio zibethinus HOM05D005951 ORTHO05D007025 9.9e-111 403.7 236 86.0
CSS0032580 Camellia sinensis var. sinensis HOM05D005951 ORTHO05D007025 2.9e-110 402.1 236 84.3
Gorai.009G038100 Gossypium raimondii HOM05D005951 ORTHO05D007025 2.9e-110 402.1 231 86.1
Manes.16G090500 Manihot esculenta HOM05D005951 ORTHO05D007025 3.8e-110 401.7 240 84.2
GSVIVG01015014001 Vitis vinifera HOM05D005951 ORTHO05D007025 3.8e-110 401.7 227 87.2
Manes.03G044600 Manihot esculenta HOM05D005951 ORTHO05D007025 4.9e-110 401.4 236 84.3
Thecc.09G070300 Theobroma cacao HOM05D005951 ORTHO05D007025 4.9e-110 401.4 236 84.7
TAR383G1060 Trochodendron aralioides HOM05D005951 ORTHO05D007025 8.4e-110 400.6 236 85.2
Duzib150G0422 Durio zibethinus HOM05D005951 ORTHO05D007025 1.1e-109 400.2 236 85.6
ClCG03G014750 Citrullus lanatus HOM05D005951 ORTHO05D007025 7.1e-109 397.5 236 84.3
Gohir.D05G037600 Gossypium hirsutum HOM05D005951 ORTHO05D007025 7.1e-109 397.5 231 85.7
Dinv25506 Davidia involucrata HOM05D005951 ORTHO05D007025 2.1e-108 396.0 238 84.9
Sed0027227 Sechium edule HOM05D005951 ORTHO05D007025 2.7e-108 395.6 236 83.1
Gohir.A05G036100 Gossypium hirsutum HOM05D005951 ORTHO05D007025 4.6e-108 394.8 239 83.3
Cfa002937 Carpinus fangiana HOM05D005951 ORTHO05D007025 7.8e-108 394.0 236 84.3
Sed0006808 Sechium edule HOM05D005951 ORTHO05D007025 1.3e-107 393.3 236 82.6
RcHm_v2.0_Chr2g0095941 Rosa chinensis HOM05D005951 ORTHO05D007025 5.1e-107 391.3 241 80.1
CiPaw.04G140200 Carya illinoinensis HOM05D005951 ORTHO05D007025 8.7e-107 390.6 236 82.6
CsaV3_1G041410 Cucumis sativus L. HOM05D005951 ORTHO05D007025 2.5e-106 389.0 236 83.5
Aqoxy7G04154 Aquilegia oxysepala HOM05D005951 ORTHO05D007025 3.3e-106 388.7 236 82.2
CiPaw.03G200400 Carya illinoinensis HOM05D005951 ORTHO05D007025 4.3e-106 388.3 236 83.5
Ciclev10009369m.g Citrus clementina HOM05D005951 ORTHO05D007025 5.6e-106 387.9 236 82.2
arahy.Tifrunner.gnm1.ann1.7AU96Q Arachis hypogaea HOM05D005951 ORTHO05D007025 2.1e-105 386.0 236 83.5
CANSAT56G0193 Cannabis sativa HOM05D005951 ORTHO05D007025 2.1e-105 386.0 241 82.2
MD02G1102200 Malus domestica HOM05D005951 ORTHO05D007025 2.1e-105 386.0 236 81.8
Nn6g35632 Nelumbo nucifera HOM05D005951 ORTHO05D007025 2.1e-105 386.0 236 82.6
Haze_26069 Corylus avellana HOM05D005951 ORTHO05D007025 2.8e-105 385.6 251 80.1
FvH4_1g09390 Fragaria vesca HOM05D005951 ORTHO05D007025 2.8e-105 385.6 227 82.8
FAN19G2090 Fragaria x ananassa HOM05D005951 ORTHO05D007025 2.8e-105 385.6 227 82.8
Lj4g0000458 Lotus japonicus HOM05D005951 ORTHO05D007025 2.8e-105 385.6 236 82.2
FAN28G0037 Fragaria x ananassa HOM05D005951 ORTHO05D007025 3.6e-105 385.2 227 82.4
FAN28G0822 Fragaria x ananassa HOM05D005951 ORTHO05D007025 3.6e-105 385.2 227 82.4
Glyma.17G045500 Glycine max HOM05D005951 ORTHO05D007025 4.8e-105 384.8 236 81.8
VMungo1215G3086 Vigna mungo HOM05D005951 ORTHO05D007025 6.2e-105 384.4 236 82.2
Actinidia39617 Actinidia chinensis HOM05D005951 ORTHO05D007025 8.1e-105 384.0 236 83.1
ATR0317G112 Amborella trichopoda HOM05D005951 ORTHO05D007025 8.1e-105 384.0 236 81.4
FAN26G0600 Fragaria x ananassa HOM05D005951 ORTHO05D007025 8.1e-105 384.0 227 82.4
FAN26G2189 Fragaria x ananassa HOM05D005951 ORTHO05D007025 8.1e-105 384.0 227 81.9
arahy.Tifrunner.gnm1.ann1.JRQ3DB Arachis hypogaea HOM05D005951 ORTHO05D007025 1.1e-104 383.6 236 83.1
COL.COLO4_21208 Corchorus olitorius HOM05D005951 ORTHO05D007025 1.1e-104 383.6 236 83.1
Nitab4.5_0000170g0090 Nicotiana tabacum HOM05D005951 ORTHO05D007025 1.1e-104 383.6 236 80.9
CANSAT56G0116 Cannabis sativa HOM05D005951 ORTHO05D007025 1.4e-104 383.3 241 81.7
Ca_21339_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002721 1.4e-104 383.3 236 80.9
Lalb_Chr13g0299191 Lupinus albus HOM05D005951 ORTHO05D007025 4.0e-104 381.7 237 82.3
Eucgr.C03197 Eucalyptus grandis HOM05D005951 ORTHO05D007025 5.3e-104 381.3 223 83.4
Eucgr.L02230 Eucalyptus grandis HOM05D005951 ORTHO05D007025 5.3e-104 381.3 223 83.4
Peaxi162Scf00474g00521 Petunia axillaris HOM05D005951 ORTHO05D007025 5.3e-104 381.3 225 82.2
Prupe.7G192100 Prunus persica HOM05D005951 ORTHO05D007025 6.9e-104 380.9 236 81.4
Glyma.13G114300 Glycine max HOM05D005951 ORTHO05D007025 1.2e-103 380.2 236 81.8
Phvul.003G127300 Phaseolus vulgaris HOM05D005951 ORTHO05D007025 7.6e-103 377.5 236 80.9
FAN23G1113 Fragaria x ananassa HOM05D005951 ORTHO05D007025 8.4e-102 374.0 231 79.7
Medtr4g124640 Medicago truncatula HOM05D005951 ORTHO05D007025 8.4e-102 374.0 236 79.2
Solyc07g042570.3 Solanum lycopersicum HOM05D005951 ORTHO05D007025 1.1e-101 373.6 225 80.9
Lsat_1_v5_gn_5_138841 Lactuca sativa HOM05D005951 ORTHO05D007025 1.4e-101 373.2 236 77.1
PGSC0003DMG400013572 Solanum tuberosum HOM05D005951 ORTHO05D007025 2.4e-101 372.5 225 80.0
Sopen07g022260 Solanum pennellii HOM05D005951 ORTHO05D007025 5.4e-101 371.3 225 80.0
Cc06_g12700 Coffea canephora HOM05D005951 ORTHO05D007025 7.1e-101 370.9 240 77.5
EL10Ac8g18966 Beta vulgaris HOM05D005951 ORTHO05D007025 9.3e-101 370.5 238 76.5
MD15G1223700 Malus domestica HOM05D005951 ORTHO05D007025 9.3e-101 370.5 236 78.8
Lalb_Chr07g0181411 Lupinus albus HOM05D005951 ORTHO05D007025 1.6e-100 369.8 237 80.6
AUR62028321 Chenopodium quinoa HOM05D005951 ORTHO05D007025 6.0e-100 367.9 240 75.0
MBI13_g01673_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 1.0e-99 367.1 234 78.6
CAN.G54.13 Capsicum annuum HOM05D005951 ORTHO05D007025 1.3e-99 366.7 236 77.1
Oeu041808.1 Olea europaea HOM05D005951 ORTHO05D007025 2.3e-99 365.9 239 75.3
MSTRG.26500 Avicennia marina HOM05D005951 ORTHO05D007025 3.0e-99 365.5 240 75.8
DCAR_028530 Daucus carota HOM05D005951 ORTHO05D007025 6.7e-99 364.4 236 77.5
PSO724G0923 Papaver somniferum HOM05D005951 ORTHO05D007025 8.7e-99 364.0 236 77.1
Migut.J00881 Erythranthe guttata HOM05D005951 ORTHO05D007025 1.5e-98 363.2 240 75.8
PSO135G0575 Papaver somniferum HOM05D005951 ORTHO05D007025 1.9e-98 362.8 236 77.1
PGR044G1586 Punica granatum HOM05D005951 ORTHO05D007025 4.3e-98 361.7 236 78.4
SGA_v2.0_scaffold55G19875 Striga asiatica HOM05D005951 ORTHO05D007025 1.3e-97 360.1 238 78.2
TPR.G12577 Trifolium pratense HOM05D005951 ORTHO05D007025 2.8e-97 359.0 230 78.3
THA.LOC104803783 Tarenaya hassleriana HOM05D005951 ORTHO05D007025 3.7e-97 358.6 236 74.6
BraA01t00476Z Brassica rapa HOM05D000526 ORTHO05D007025 8.1e-97 357.5 236 75.8
BcaC09g52137 Brassica carinata HOM05D005951 ORTHO05D007025 1.8e-96 356.3 236 75.8
Sp7g31000 Schrenkiella parvula HOM05D005951 ORTHO05D007025 1.8e-96 356.3 236 75.4
BcaC01g01000 Brassica carinata HOM05D005951 ORTHO05D007025 2.4e-96 355.9 236 74.2
BolC3t20971H Brassica oleracea HOM05D005951 ORTHO05D007025 2.4e-96 355.9 236 74.2
HPP92_004361 Vanilla planifolia HOM05D005951 ORTHO05D007025 2.4e-96 355.9 223 78.5
BraA08t33722Z Brassica rapa HOM05D005951 ORTHO05D007025 3.1e-96 355.5 237 74.7
BcaB03g12809 Brassica carinata HOM05D005951 ORTHO05D007025 4.0e-96 355.1 236 74.2
CDE07G2051 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 6.9e-96 354.4 237 74.7
C03p86770 Brassica napus HOM05D005951 ORTHO05D007025 9.0e-96 354.0 237 74.7
SEGI_21232 Sequoiadendron giganteum HOM05D005951 ORTHO05D007025 9.0e-96 354.0 234 74.8
C01p05390 Brassica napus HOM05D000526 ORTHO05D000956 2.6e-95 352.4 234 76.1
Thhalv10026154m.g Eutrema salsugineum HOM05D005951 ORTHO05D007025 3.4e-95 352.1 236 73.7
MELO3C015553.2 Cucumis melo HOM05D005951 ORTHO05D007025 4.5e-95 351.7 236 78.0
BolC1t00519H Brassica oleracea HOM05D000526 ORTHO05D007025 5.8e-95 351.3 223 77.6
AL7G18300 Arabidopsis lyrata HOM05D005951 ORTHO05D007025 1.3e-94 350.1 232 75.0
Zm00001eb401690 Zea mays HOM05D005951 ORTHO05D007025 1.7e-94 349.7 219 78.1
A08p17720 Brassica napus HOM05D005951 ORTHO05D007025 2.2e-94 349.4 224 75.9
ECA234G1587 Erigeron canadensis HOM05D005951 ORTHO05D007025 2.2e-94 349.4 218 76.6
Carub.0007s0721 Capsella rubella HOM05D005951 ORTHO05D007025 6.5e-94 347.8 236 74.2
Aa31LG5G9380 Aethionema arabicum HOM05D005951 ORTHO05D007025 1.1e-93 347.1 231 75.3
AT4G33250 Arabidopsis thaliana HOM05D005951 ORTHO05D007025 9.3e-93 344.0 232 74.6
Os03g0182700 Oryza sativa ssp. japonica HOM05D005951 ORTHO05D007025 9.3e-93 344.0 220 75.5
HanXRQChr10g0319821 Helianthus annuus HOM05D005951 ORTHO05D007025 1.2e-92 343.6 227 75.8
A03p61920 Brassica napus HOM05D000526 ORTHO05D007025 3.0e-91 339.0 260 67.3
Oeu000276.3 Olea europaea HOM05D005951 ORTHO05D007025 3.0e-91 339.0 304 59.9
MBI19_g36230_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 3.3e-90 335.5 236 75.4
unitig_899.g15181 Utricularia gibba HOM05D005951 ORTHO05D007025 9.6e-90 334.0 226 69.9
Lj7C692T6 Lonicera japonica HOM05D005951 ORTHO05D007025 4.8e-89 331.6 240 72.9
vmacro17078 Vaccinium macrocarpon HOM05D005951 ORTHO05D007025 4.8e-89 331.6 321 58.6
Mapoly0073s0056 Marchantia polymorpha HOM05D005951 ORTHO05D007025 2.4e-88 329.3 223 70.0
Nitab4.5_0003139g0080 Nicotiana tabacum HOM05D005951 ORTHO05D007025 3.1e-88 328.9 236 72.0
C07p59570 Brassica napus HOM05D005951 ORTHO05D007025 9.3e-85 317.4 236 68.6
Hund26110 Selenicereus undatus HOM05D005951 ORTHO05D007025 9.3e-85 317.4 236 67.8
Actinidia30258 Actinidia chinensis HOM05D005951 ORTHO05D007025 1.2e-84 317.0 187 84.0
BcaNung02163 Brassica carinata HOM05D005951 ORTHO05D007025 7.9e-84 314.3 236 67.8
AUR62025338 Chenopodium quinoa HOM05D005951 ORTHO05D007025 3.0e-83 312.4 192 77.6
Pp3c18_14720 Physcomitrium patens HOM05D005951 ORTHO05D007025 3.3e-82 308.9 230 65.7
Pp3c21_14860 Physcomitrium patens HOM05D005951 ORTHO05D007025 1.3e-81 307.0 227 65.6
BraA03t15230Z Brassica rapa HOM05D005951 ORTHO05D007025 5.3e-80 301.6 195 76.4
Zm00001eb401710 Zea mays HOM05D005951 ORTHO05D007025 1.2e-79 300.4 198 74.2
CDE06G1359 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 3.4e-79 298.9 201 76.1
Rhsim05G0002100 Rhododendron simsii HOM05D005951 ORTHO05D007025 2.2e-78 296.2 237 67.1
SMO239G0051 Selaginella moellendorffii HOM05D005951 ORTHO05D007025 5.0e-78 295.0 226 61.5
BolC7t46402H Brassica oleracea HOM05D005951 ORTHO05D007025 2.1e-68 263.1 197 67.0
Zm00001eb006150 Zea mays HOM05D005951 ORTHO05D007025 7.9e-68 261.2 168 75.0
Sc08g0009170 Simmondsia chinensis HOM05D005951 ORTHO05D007025 2.6e-63 246.1 154 79.9
Migut.L01596 Erythranthe guttata HOM05D005951 ORTHO05D007025 5.9e-63 245.0 229 57.6
AagrBONN_evm.TU.Sc2ySwM_117.912 Anthoceros agrestis HOM05D005951 ORTHO05D007025 7.7e-55 218.0 158 67.1
CBR_g16046 Chara braunii HOM05D005951 ORTHO05D007025 2.5e-53 213.0 218 49.5
CARHR241300 Cardamine hirsuta HOM05D005951 ORTHO05D007025 4.4e-42 175.6 119 68.1
SalBow6G6500 Salvia bowleyana HOM05D005951 ORTHO05D007025 2.5e-37 159.8 107 78.5
Cre12.g515650 Chlamydomonas reinhardtii HOM05D005951 ORTHO05D007025 3.6e-36 156.0 189 38.1
MD02G1101200 Malus domestica HOM05D005951 ORTHO05D007025 9.5e-29 131.3 97 71.1
PRCOL_00003879 Prasinoderma coloniale HOM05D005951 ORTHO05D007025 3.9e-22 109.4 209 32.5
ATR0705G105 Amborella trichopoda HOM05D005951 ORTHO05D007025 1.4e-11 74.3 74 45.9


User provided reference genes

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