Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI34G0922 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 6.5e-99 364.0 176 100.0
Cpa.g.sc84.80 Carica papaya HOM05D005867 ORTHO05D007273 2.1e-89 332.4 172 91.3
Gorai.009G072300 Gossypium raimondii HOM05D005867 ORTHO05D007273 2.3e-88 328.9 172 89.5
Gohir.D05G071300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 3.0e-88 328.6 172 89.0
TWI60G1455 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 1.5e-87 326.2 172 89.5
COL.COLO4_24845 Corchorus olitorius HOM05D005867 ORTHO05D007273 2.0e-87 325.9 172 88.4
Gohir.A05G068300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 2.6e-87 325.5 172 87.8
Duzib168G0296 Durio zibethinus HOM05D005867 ORTHO05D007273 5.7e-87 324.3 172 89.5
Ciclev10016610m.g Citrus clementina HOM05D005867 ORTHO05D007273 7.4e-87 323.9 172 87.2
Haze_23087 Corylus avellana HOM05D005867 ORTHO05D007273 7.4e-87 323.9 175 87.4
Dinv08036 Davidia involucrata HOM05D005867 ORTHO05D007273 9.7e-87 323.6 172 88.4
Eucgr.J00791 Eucalyptus grandis HOM05D005867 ORTHO05D007273 1.3e-86 323.2 172 87.8
Potri.001G018500 Populus trichocarpa HOM05D005867 ORTHO05D007273 1.3e-86 323.2 172 86.0
Sabra01G0013100 Salix brachista HOM05D005867 ORTHO05D007273 1.3e-86 323.2 172 85.5
Ah.06g193630 Amaranthus hybridus HOM05D005867 ORTHO05D007273 1.7e-86 322.8 172 87.8
Cfa009733 Carpinus fangiana HOM05D005867 ORTHO05D007273 1.7e-86 322.8 172 87.8
Rhsim13G0224100 Rhododendron simsii HOM05D005867 ORTHO05D007273 2.2e-86 322.4 172 86.0
Atru.chr3.2589 Acer truncatum HOM05D005867 ORTHO05D007273 3.7e-86 321.6 172 86.6
Ah.04g161870 Amaranthus hybridus HOM05D005867 ORTHO05D007273 4.8e-86 321.2 172 87.2
Thecc.09G227900 Theobroma cacao HOM05D005867 ORTHO05D007273 1.1e-85 320.1 172 85.5
Actinidia16309 Actinidia chinensis HOM05D005867 ORTHO05D007273 1.4e-85 319.7 172 86.6
FAN25G0812 Fragaria x ananassa HOM05D005867 ORTHO05D007273 1.4e-85 319.7 172 86.0
EL10Ac4g10299 Beta vulgaris HOM05D005867 ORTHO05D007273 1.8e-85 319.3 172 86.6
ECA238G1591 Erigeron canadensis HOM05D005867 ORTHO05D007273 3.1e-85 318.5 172 84.3
AUR62000096 Chenopodium quinoa HOM05D005867 ORTHO05D007273 4.1e-85 318.2 172 85.5
AUR62019269 Chenopodium quinoa HOM05D005867 ORTHO05D007273 4.1e-85 318.2 172 85.5
PGR119G1510 Punica granatum HOM05D005867 ORTHO05D007273 4.1e-85 318.2 172 86.0
Dinv36283 Davidia involucrata HOM05D005867 ORTHO05D007273 7.0e-85 317.4 172 86.0
FvH4_3g43090 Fragaria vesca HOM05D005867 ORTHO05D007273 7.0e-85 317.4 172 84.9
FAN11G1123 Fragaria x ananassa HOM05D005867 ORTHO05D007273 7.0e-85 317.4 172 84.9
CSS0048722 Camellia sinensis var. sinensis HOM05D005867 ORTHO05D007273 9.1e-85 317.0 172 85.5
Prupe.6G023200 Prunus persica HOM05D005867 ORTHO05D007273 1.2e-84 316.6 172 84.3
SHI29727 Sapria himalayana HOM05D005867 ORTHO05D007273 1.2e-84 316.6 172 84.9
TAR636G0304 Trochodendron aralioides HOM05D005867 ORTHO05D007273 1.2e-84 316.6 172 85.5
VMungo1080G0295 Vigna mungo HOM05D005867 ORTHO05D007273 1.6e-84 316.2 172 85.5
THA.LOC104804975 Tarenaya hassleriana HOM05D005867 ORTHO05D007273 2.6e-84 315.5 172 86.0
MSTRG.21396 Avicennia marina HOM05D005867 ORTHO05D007273 4.5e-84 314.7 172 83.7
CANSAT54G1708 Cannabis sativa HOM05D005867 ORTHO05D007273 4.5e-84 314.7 172 84.9
CiPaw.13G163600 Carya illinoinensis HOM05D005867 ORTHO05D007273 4.5e-84 314.7 172 86.0
FAN21G2433 Fragaria x ananassa HOM05D005867 ORTHO05D007273 4.5e-84 314.7 172 84.3
RcHm_v2.0_Chr5g0077191 Rosa chinensis HOM05D005867 ORTHO05D007273 4.5e-84 314.7 172 83.7
TAR633G2552 Trochodendron aralioides HOM05D005867 ORTHO05D007273 4.5e-84 314.7 172 84.3
Glyma.15G033100 Glycine max HOM05D005867 ORTHO05D007273 5.9e-84 314.3 172 85.5
Phvul.L010243 Phaseolus vulgaris HOM05D005867 ORTHO05D007273 5.9e-84 314.3 172 85.5
Nitab4.5_0001925g0100 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.0e-83 313.5 172 82.6
ClCG03G013300 Citrullus lanatus HOM05D005867 ORTHO05D007273 1.3e-83 313.2 172 84.3
BcaC04g19155 Brassica carinata HOM05D002203 ORTHO05D007273 1.7e-83 312.8 172 86.0
Oeu035742.1 Olea europaea HOM05D005867 ORTHO05D007273 1.7e-83 312.8 172 83.1
Carub.0006s1124 Capsella rubella HOM05D005867 ORTHO05D007273 2.2e-83 312.4 172 85.5
Thhalv10014788m.g Eutrema salsugineum HOM05D005867 ORTHO05D007273 2.2e-83 312.4 172 85.5
MD03G1024000 Malus domestica HOM05D005867 ORTHO05D007273 2.2e-83 312.4 172 83.7
QL01p005337 Quercus lobata HOM05D005867 ORTHO05D007273 2.2e-83 312.4 172 83.1
Sed0004394 Sechium edule HOM05D005867 ORTHO05D007273 2.2e-83 312.4 172 84.9
GSVIVG01025306001 Vitis vinifera HOM05D005867 ORTHO05D007273 2.2e-83 312.4 172 83.7
CsaV3_1G042730 Cucumis sativus L. HOM05D005867 ORTHO05D007273 2.9e-83 312.0 172 84.9
HanXRQChr02g0036871 Helianthus annuus HOM05D005867 ORTHO05D007273 2.9e-83 312.0 172 82.6
Nn2g15416 Nelumbo nucifera HOM05D005867 ORTHO05D007273 2.9e-83 312.0 172 85.5
Sp6g30910 Schrenkiella parvula HOM05D005867 ORTHO05D007273 2.9e-83 312.0 172 84.9
Aa31LG3G14590 Aethionema arabicum HOM05D005867 ORTHO05D007273 3.8e-83 311.6 172 84.3
HanXRQChr14g0453051 Helianthus annuus HOM05D005867 ORTHO05D007273 3.8e-83 311.6 172 82.0
Peaxi162Scf00029g00326 Petunia axillaris HOM05D005867 ORTHO05D007273 3.8e-83 311.6 172 82.6
MELO3C015200.2 Cucumis melo HOM05D005867 ORTHO05D007273 5.0e-83 311.2 172 84.3
Lsat_1_v5_gn_2_100781 Lactuca sativa HOM05D005867 ORTHO05D007273 5.0e-83 311.2 172 82.6
MD11G1028900 Malus domestica HOM05D005867 ORTHO05D007273 5.0e-83 311.2 172 83.1
AL6G23670 Arabidopsis lyrata HOM05D005867 ORTHO05D007273 6.5e-83 310.8 172 84.9
Nitab4.5_0008647g0010 Nicotiana tabacum HOM05D005867 ORTHO05D007273 6.5e-83 310.8 172 81.4
C09p64030 Brassica napus HOM05D005867 ORTHO05D007273 8.5e-83 310.5 172 84.9
BolC9t59241H Brassica oleracea HOM05D005867 ORTHO05D007273 8.5e-83 310.5 172 84.9
Nitab4.5_0002766g0030 Nicotiana tabacum HOM05D005867 ORTHO05D007273 8.5e-83 310.5 172 82.0
CARHR200400 Cardamine hirsuta HOM05D005867 ORTHO05D007273 1.1e-82 310.1 172 84.3
Cc01_g01980 Coffea canephora HOM05D005867 ORTHO05D007273 1.1e-82 310.1 172 83.1
FAN16G1279 Fragaria x ananassa HOM05D005867 ORTHO05D007273 1.1e-82 310.1 172 83.7
Manes.06G166900 Manihot esculenta HOM05D005867 ORTHO05D007273 1.1e-82 310.1 172 83.1
AT5G13070 Arabidopsis thaliana HOM05D005867 ORTHO05D007273 1.5e-82 309.7 172 84.3
PGSC0003DMG400013588 Solanum tuberosum HOM05D005867 ORTHO05D007273 1.9e-82 309.3 172 82.0
A02p01670 Brassica napus HOM05D005867 ORTHO05D007273 2.5e-82 308.9 172 84.3
BolC2t06533H Brassica oleracea HOM05D005867 ORTHO05D007273 2.5e-82 308.9 172 84.3
BraA02t05146Z Brassica rapa HOM05D005867 ORTHO05D007273 2.5e-82 308.9 172 84.3
BraA10t44575Z Brassica rapa HOM05D005867 ORTHO05D007273 3.2e-82 308.5 172 84.9
A10p25130 Brassica napus HOM05D005867 ORTHO05D007273 4.2e-82 308.1 172 84.9
Solyc11g061760.3 Solanum lycopersicum HOM05D005867 ORTHO05D007273 4.2e-82 308.1 172 81.4
Sopen11g023660 Solanum pennellii HOM05D005867 ORTHO05D007273 4.2e-82 308.1 172 81.4
BcaNung01858 Brassica carinata HOM05D005867 ORTHO05D007273 5.5e-82 307.8 172 83.7
DCAR_002056 Daucus carota HOM05D005867 ORTHO05D007273 5.5e-82 307.8 172 81.4
Migut.D00576 Erythranthe guttata HOM05D005867 ORTHO05D007273 5.5e-82 307.8 172 82.0
Nitab4.5_0008868g0020 Nicotiana tabacum HOM05D005867 ORTHO05D007273 7.2e-82 307.4 172 82.0
Sc06g0004490 Simmondsia chinensis HOM05D005867 ORTHO05D007273 7.2e-82 307.4 172 84.3
SGA_v2.0_scaffold8G04610 Striga asiatica HOM05D005867 ORTHO05D007273 7.2e-82 307.4 172 80.8
BcaNung01174 Brassica carinata HOM05D005867 ORTHO05D007273 1.2e-81 306.6 172 83.7
C02p05880 Brassica napus HOM05D005867 ORTHO05D007273 1.2e-81 306.6 172 83.1
MSTRG.17581 Avicennia marina HOM05D005867 ORTHO05D007273 2.7e-81 305.4 172 80.8
CAN.G575.64 Capsicum annuum HOM05D005867 ORTHO05D007273 4.7e-81 304.7 172 80.8
PGSC0003DMG400023838 Solanum tuberosum HOM05D005867 ORTHO05D007273 6.1e-81 304.3 172 80.8
Sopen12g034670 Solanum pennellii HOM05D005867 ORTHO05D007273 8.0e-81 303.9 172 80.8
Solyc12g100050.2 Solanum lycopersicum HOM05D005867 ORTHO05D007273 1.0e-80 303.5 172 80.8
SalBow4G1382 Salvia bowleyana HOM05D005867 ORTHO05D007273 3.0e-80 302.0 172 79.1
Migut.N02304 Erythranthe guttata HOM05D005867 ORTHO05D007273 4.0e-80 301.6 172 81.4
Oeu052048.1 Olea europaea HOM05D005867 ORTHO05D007273 5.2e-80 301.2 172 79.7
SalBow4G0034 Salvia bowleyana HOM05D005867 ORTHO05D007273 8.8e-80 300.4 172 78.5
Aqoxy1G00241 Aquilegia oxysepala HOM05D005867 ORTHO05D007273 2.8e-78 295.4 172 79.1
Duzib150G0087 Durio zibethinus HOM05D005867 ORTHO05D007273 2.8e-78 295.4 174 82.2
MBI17_g30524_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 1.8e-77 292.7 172 77.3
Lalb_Chr14g0372181 Lupinus albus HOM05D005867 ORTHO05D007273 3.1e-77 292.0 172 79.1
PSO384G4422 Papaver somniferum HOM05D005867 ORTHO05D007273 5.3e-77 291.2 172 79.1
PSO339G4569 Papaver somniferum HOM05D005867 ORTHO05D007273 4.5e-76 288.1 172 78.5
unitig_21.g20645 Utricularia gibba HOM05D005867 ORTHO05D007273 5.9e-76 287.7 172 73.3
arahy.Tifrunner.gnm1.ann1.V9D8IR Arachis hypogaea HOM05D005867 ORTHO05D007273 1.7e-75 286.2 172 78.5
arahy.Tifrunner.gnm1.ann1.2D2P15 Arachis hypogaea HOM05D005867 ORTHO05D007273 3.8e-75 285.0 172 77.9
Cfa009734 Carpinus fangiana HOM05D005867 ORTHO05D007273 5.5e-74 281.2 172 75.6
Lj3g0003495 Lotus japonicus HOM05D005867 ORTHO05D007273 1.0e-72 276.9 172 75.6
TPR.G6870 Trifolium pratense HOM05D005867 ORTHO05D007273 1.3e-70 270.0 172 72.7
CiPaw.13G163500 Carya illinoinensis HOM05D005867 ORTHO05D007273 2.2e-70 269.2 172 72.7
Ca_01285_v3 Cicer arietinum L. HOM05D005867 ORTHO05D007273 2.2e-70 269.2 172 72.1
Psat5g287440 Pisum sativum HOM05D005867 ORTHO05D007273 1.8e-69 266.2 172 72.1
QL01p005297 Quercus lobata HOM05D005867 ORTHO05D007273 2.4e-69 265.8 172 71.5
Medtr1g058050 Medicago truncatula HOM05D005867 ORTHO05D007273 3.1e-69 265.4 172 71.5
Medtr2g098170 Medicago truncatula HOM05D005867 ORTHO05D007273 5.4e-69 264.6 172 70.9
Medtr2g017985 Medicago truncatula HOM05D005867 ORTHO05D007273 9.1e-69 263.8 172 70.3
Medtr8g096810 Medicago truncatula HOM05D005867 ORTHO05D007273 2.0e-68 262.7 172 70.3
ATR0605G298 Amborella trichopoda HOM05D005867 ORTHO05D007273 4.0e-64 248.4 172 65.7
Mapoly0061s0125 Marchantia polymorpha HOM05D005867 ORTHO05D007273 1.3e-59 233.4 172 55.2
MBI01_g27622_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 7.3e-58 227.6 173 64.7
Pp3c14_26010 Physcomitrium patens HOM05D005867 ORTHO05D007273 2.2e-54 216.1 175 52.0
SMO147G0033 Selaginella moellendorffii HOM05D005867 ORTHO05D007273 1.8e-53 213.0 172 54.1
Os02g0717900 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 1.3e-51 206.8 177 52.5
Pp3c1_37310 Physcomitrium patens HOM05D005867 ORTHO05D007273 1.5e-50 203.4 173 50.3
CBR_g20418 Chara braunii HOM05D005867 ORTHO05D007273 5.8e-47 191.4 168 48.8
HPP92_022794 Vanilla planifolia HOM05D005867 ORTHO05D007273 3.2e-45 185.7 151 55.6
Os09g0486000 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 3.1e-40 169.1 176 48.9
Zm00001eb316590 Zea mays HOM05D005867 ORTHO05D007273 4.3e-34 148.7 172 47.1
Lj2P647T17 Lonicera japonica HOM05D005867 ORTHO05D007273 8.4e-30 134.4 78 80.8
Actinidia28459 Actinidia chinensis HOM05D005867 ORTHO05D055216 2.9e-22 109.4 54 90.7
Zm00001eb189280 Zea mays HOM05D005867 ORTHO05D007273 1.2e-20 104.0 78 61.5
Mapoly0008s0230 Marchantia polymorpha HOM05D005867 ORTHO05D254737 1.6e-20 103.6 146 34.2
Cfa022043 Carpinus fangiana HOM05D002321 ORTHO05D006940 4.0e-08 62.4 88 34.1


User provided reference genes

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