Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI34G0517 Tripterygium wilfordii HOM05D003482 ORTHO05D004194 1.4e-270 935.6 456 100.0
TWI32G0788 Tripterygium wilfordii HOM05D003482 ORTHO05D004194 8.4e-207 723.8 515 70.5
Manes.16G137200 Manihot esculenta HOM05D003482 ORTHO05D004194 1.7e-196 689.5 478 69.7
Potri.018G003400 Populus trichocarpa HOM05D003482 ORTHO05D004194 2.5e-195 685.6 517 67.3
TAR506G0002 Trochodendron aralioides HOM05D003482 ORTHO05D004194 9.6e-195 683.7 511 66.9
Dinv11875 Davidia involucrata HOM05D003482 ORTHO05D004194 2.1e-194 682.6 510 67.8
Thecc.09G004000 Theobroma cacao HOM05D003482 ORTHO05D004194 1.1e-193 680.2 507 67.9
Duzib168G0916 Durio zibethinus HOM05D003482 ORTHO05D004194 2.6e-192 675.6 495 68.1
Manes.03G001800 Manihot esculenta HOM05D003482 ORTHO05D004194 5.8e-192 674.5 500 66.6
CiPaw.07G208900 Carya illinoinensis HOM05D003482 ORTHO05D004194 2.2e-191 672.5 511 65.9
Sabra18G0008800 Salix brachista HOM05D003482 ORTHO05D004194 3.8e-191 671.8 514 66.1
FvH4_2g36370 Fragaria vesca HOM05D003482 ORTHO05D004194 4.9e-191 671.4 493 66.7
Prupe.1G455100 Prunus persica HOM05D003482 ORTHO05D004194 1.9e-190 669.5 496 66.7
Cfa013321 Carpinus fangiana HOM05D003482 ORTHO05D004194 2.4e-190 669.1 510 66.1
Sabra18G0009100 Salix brachista HOM05D003482 ORTHO05D004194 3.2e-190 668.7 543 63.5
Sabra18G0002200 Salix brachista HOM05D003482 ORTHO05D004194 5.4e-190 667.9 543 63.5
Actinidia14155 Actinidia chinensis HOM05D003482 ORTHO05D004194 9.3e-190 667.2 509 65.6
Potri.006G276600 Populus trichocarpa HOM05D003482 ORTHO05D004194 2.1e-189 666.0 512 65.8
Cpa.g.sc328.6 Carica papaya HOM05D003482 ORTHO05D004194 1.3e-188 663.3 504 66.5
Gohir.D05G068400 Gossypium hirsutum HOM05D003482 ORTHO05D004194 1.3e-188 663.3 493 66.5
COL.COLO4_18624 Corchorus olitorius HOM05D003482 ORTHO05D004194 1.8e-188 662.9 503 66.2
Gohir.A05G066000 Gossypium hirsutum HOM05D003482 ORTHO05D004194 1.8e-188 662.9 492 66.7
Gorai.009G069300 Gossypium raimondii HOM05D003482 ORTHO05D004194 5.1e-188 661.4 493 66.3
TAR626G0827 Trochodendron aralioides HOM05D003482 ORTHO05D004194 1.9e-187 659.4 501 65.1
Ciclev10007354m.g Citrus clementina HOM05D003482 ORTHO05D004194 2.5e-187 659.1 512 62.9
MD08G1123100 Malus domestica HOM05D003482 ORTHO05D004194 7.4e-187 657.5 505 65.0
QL12p026010 Quercus lobata HOM05D003482 ORTHO05D004194 7.4e-187 657.5 511 64.8
Nn8g40986 Nelumbo nucifera HOM05D003482 ORTHO05D004194 2.1e-186 656.0 512 64.3
RcHm_v2.0_Chr6g0305511 Rosa chinensis HOM05D003482 ORTHO05D004194 2.8e-186 655.6 471 69.0
Sabra06G0214300 Salix brachista HOM05D003482 ORTHO05D004194 4.8e-186 654.8 553 61.3
Haze_21807 Corylus avellana HOM05D003482 ORTHO05D004194 6.2e-186 654.4 536 63.2
PSO423G0073 Papaver somniferum HOM05D003482 ORTHO05D004194 2.4e-185 652.5 486 65.6
PSO596G0002 Papaver somniferum HOM05D003482 ORTHO05D004194 2.4e-185 652.5 486 65.6
COL.COLO4_18622 Corchorus olitorius HOM05D003482 ORTHO05D004194 4.0e-185 651.7 469 68.7
Lj1g0006594 Lotus japonicus HOM05D003482 ORTHO05D004194 5.3e-185 651.4 500 65.4
Psat6g006000 Pisum sativum HOM05D003482 ORTHO05D004194 6.9e-185 651.0 497 65.6
Atru.chr7.2677 Acer truncatum HOM05D003482 ORTHO05D004194 1.2e-184 650.2 495 66.3
Ca_12826_v3 Cicer arietinum L. HOM05D003482 ORTHO05D004194 5.8e-184 647.9 496 65.3
Lalb_Chr14g0362391 Lupinus albus HOM05D003482 ORTHO05D004194 5.8e-184 647.9 489 66.5
Sopen08g022930 Solanum pennellii HOM05D003482 ORTHO05D004194 8.4e-183 644.0 495 65.1
Nitab4.5_0000970g0010 Nicotiana tabacum HOM05D003482 ORTHO05D004194 4.2e-182 641.7 499 64.5
VMungo0647G1298 Vigna mungo HOM05D003482 ORTHO05D004194 5.5e-182 641.3 499 64.5
Glyma.14G139800 Glycine max HOM05D003482 ORTHO05D004194 1.2e-181 640.2 500 64.4
Phvul.001G077100 Phaseolus vulgaris HOM05D003482 ORTHO05D004194 2.7e-181 639.0 499 63.9
Eucgr.C03989 Eucalyptus grandis HOM05D003482 ORTHO05D004194 3.5e-181 638.6 510 62.4
DCAR_004550 Daucus carota HOM05D003482 ORTHO05D004194 7.9e-181 637.5 515 60.6
Hund03269 Selenicereus undatus HOM05D003482 ORTHO05D004194 1.3e-180 636.7 510 63.5
Glyma.17G188300 Glycine max HOM05D003482 ORTHO05D004194 2.3e-180 636.0 501 63.3
Sc14g0002010 Simmondsia chinensis HOM05D003482 ORTHO05D004194 2.3e-180 636.0 488 65.4
Rhsim07G0170800 Rhododendron simsii HOM05D003482 ORTHO05D004194 3.9e-180 635.2 498 64.5
Aqoxy7G02727 Aquilegia oxysepala HOM05D003482 ORTHO05D004194 6.7e-180 634.4 508 63.0
CANSAT25G1343 Cannabis sativa HOM05D003482 ORTHO05D004194 8.7e-180 634.0 512 62.3
Hund19390 Selenicereus undatus HOM05D003482 ORTHO05D004194 8.7e-180 634.0 506 63.2
Peaxi162Scf00213g01025 Petunia axillaris HOM05D003482 ORTHO05D004194 2.1e-178 629.4 484 64.3
CsaV3_3G047320 Cucumis sativus L. HOM05D003482 ORTHO05D004194 2.8e-178 629.0 511 63.2
BraA02t08971Z Brassica rapa HOM05D003482 ORTHO05D004194 1.1e-177 627.1 494 63.0
CAN.G195.3 Capsicum annuum HOM05D003482 ORTHO05D004194 1.1e-177 627.1 498 64.1
A02p40080 Brassica napus HOM05D003482 ORTHO05D004194 1.4e-177 626.7 494 62.6
Lj7C753G1 Lonicera japonica HOM05D003482 ORTHO05D004194 1.4e-177 626.7 550 59.8
CARHR188650 Cardamine hirsuta HOM05D003482 ORTHO05D004194 2.4e-177 625.9 505 61.4
BcaC03g17943 Brassica carinata HOM05D003482 ORTHO05D004194 3.1e-177 625.5 494 62.3
BolC2t12059H Brassica oleracea HOM05D003482 ORTHO05D004194 6.9e-177 624.4 494 62.3
Thhalv10003586m.g Eutrema salsugineum HOM05D003482 ORTHO05D004194 9.0e-177 624.0 498 62.7
C02p60040 Brassica napus HOM05D003482 ORTHO05D004194 2.0e-176 622.9 494 62.1
AL6G36450 Arabidopsis lyrata HOM05D003482 ORTHO05D004194 3.4e-176 622.1 505 61.0
MBI13_g31548_MAGBIO Magnolia biondii HOM05D003482 ORTHO05D004194 4.5e-176 621.7 495 62.8
BcaB07g29924 Brassica carinata HOM05D003482 ORTHO05D004194 1.0e-175 620.5 496 61.9
MELO3C003597.2 Cucumis melo HOM05D003482 ORTHO05D004194 1.3e-175 620.2 513 61.6
BolC7t44825H Brassica oleracea HOM05D003482 ORTHO05D004194 1.7e-175 619.8 499 61.5
Sp2g22640 Schrenkiella parvula HOM05D003482 ORTHO05D004194 1.7e-175 619.8 506 61.5
Migut.A00459 Erythranthe guttata HOM05D003482 ORTHO05D004194 2.9e-175 619.0 469 64.6
Carub.0006s2266 Capsella rubella HOM05D003482 ORTHO05D004194 3.8e-175 618.6 508 60.4
C07p42960 Brassica napus HOM05D003482 ORTHO05D004194 4.9e-175 618.2 499 61.3
Sed0005804 Sechium edule HOM05D003482 ORTHO05D004194 8.4e-175 617.5 512 61.5
Aa31LG11G4020 Aethionema arabicum HOM05D003482 ORTHO05D004194 7.1e-174 614.4 504 60.5
BraA06t26483Z Brassica rapa HOM05D003482 ORTHO05D004194 9.3e-174 614.0 499 60.3
HanXRQChr13g0411821 Helianthus annuus HOM05D003482 ORTHO05D004194 9.3e-174 614.0 480 63.5
PGR044G0156 Punica granatum HOM05D003482 ORTHO05D004194 9.3e-174 614.0 491 64.2
SGA_v2.0_scaffold27G11648 Striga asiatica HOM05D003482 ORTHO05D004194 2.1e-173 612.8 486 63.2
A06p35580 Brassica napus HOM05D003482 ORTHO05D004194 3.5e-173 612.1 499 60.5
MSTRG.11822 Avicennia marina HOM05D003482 ORTHO05D004194 1.3e-172 610.1 495 62.8
HanXRQChr03g0082881 Helianthus annuus HOM05D003482 ORTHO05D004194 3.9e-172 608.6 484 62.6
AT5G24810 Arabidopsis thaliana HOM05D003482 ORTHO05D004194 6.7e-172 607.8 505 59.4
HanXRQChr03g0081371 Helianthus annuus HOM05D003482 ORTHO05D004194 4.3e-171 605.1 456 64.5
FAN15G0261 Fragaria x ananassa HOM05D003482 ORTHO05D004194 9.7e-171 604.0 495 61.4
FAN20G1504 Fragaria x ananassa HOM05D003482 ORTHO05D004194 1.3e-170 603.6 495 61.2
HPP92_015798 Vanilla planifolia HOM05D003482 ORTHO05D004194 3.7e-170 602.1 479 62.2
Lsat_1_v5_gn_5_60380 Lactuca sativa HOM05D003482 ORTHO05D004194 1.1e-169 600.5 472 61.2
HPP92_015810 Vanilla planifolia HOM05D003482 ORTHO05D004194 1.1e-169 600.5 479 62.2
FvH4_2g36372 Fragaria vesca HOM05D003482 ORTHO05D004194 6.9e-169 597.8 439 66.7
FAN27G0167 Fragaria x ananassa HOM05D003482 ORTHO05D004194 1.5e-168 596.7 440 66.4
ECA240G1915 Erigeron canadensis HOM05D003482 ORTHO05D004194 2.0e-168 596.3 482 62.2
BcaNung01256 Brassica carinata HOM05D003482 ORTHO05D004194 3.4e-168 595.5 491 60.1
THA.LOC104814963 Tarenaya hassleriana HOM05D003482 ORTHO05D004194 4.5e-168 595.1 507 59.0
arahy.Tifrunner.gnm1.ann1.N6E37M Arachis hypogaea HOM05D003482 ORTHO05D004194 2.5e-166 589.3 496 60.5
Zm00001eb272880 Zea mays HOM05D003482 ORTHO05D004194 1.2e-165 587.0 493 59.8
EL10Ac2g03705 Beta vulgaris HOM05D003482 ORTHO05D004194 2.1e-165 586.3 510 59.8
Lsat_1_v5_gn_5_58881 Lactuca sativa HOM05D003482 ORTHO05D004194 7.9e-165 584.3 451 61.4
PGSC0003DMG400029592 Solanum tuberosum HOM05D003482 ORTHO05D004194 3.7e-162 575.5 442 65.4
arahy.Tifrunner.gnm1.ann1.21Z9DD Arachis hypogaea HOM05D003482 ORTHO05D004194 8.2e-162 574.3 496 59.1
ATR0626G323 Amborella trichopoda HOM05D003482 ORTHO05D004194 2.4e-161 572.8 484 60.1
Ah.10g033820 Amaranthus hybridus HOM05D002718 ORTHO05D003269 5.3e-161 571.6 586 53.6
CDE05G0655 Ceratophyllum demersum HOM05D003482 ORTHO05D004194 6.9e-161 571.2 495 59.2
Lsat_1_v5_gn_5_59000 Lactuca sativa HOM05D003482 ORTHO05D004194 2.0e-160 569.7 447 61.1
Lsat_1_v5_gn_5_58921 Lactuca sativa HOM05D003482 ORTHO05D004194 2.9e-159 565.8 445 61.6
Lsat_1_v5_gn_5_58361 Lactuca sativa HOM05D003482 ORTHO05D004194 1.2e-157 560.5 456 59.4
ECA233G2479 Erigeron canadensis HOM05D003482 ORTHO05D004194 3.1e-153 545.8 430 63.0
ECA240G2590 Erigeron canadensis HOM05D003482 ORTHO05D004194 1.2e-152 543.9 440 59.5
ECA240G0557 Erigeron canadensis HOM05D003482 ORTHO05D004194 1.7e-151 540.0 442 60.4
Lalb_Chr22g0361011 Lupinus albus HOM05D003482 ORTHO05D004194 3.0e-148 529.3 332 75.9
ECA240G4147 Erigeron canadensis HOM05D003482 ORTHO05D004194 1.3e-146 523.9 441 59.0
Medtr1g008980 Medicago truncatula HOM05D003482 ORTHO05D004194 2.8e-146 522.7 329 74.2
Lsat_1_v5_gn_5_60400 Lactuca sativa HOM05D003482 ORTHO05D004194 7.0e-145 518.1 404 61.4
HanXRQChr13g0411981 Helianthus annuus HOM05D003482 ORTHO05D004194 1.1e-142 510.8 450 57.3
ECA240G0756 Erigeron canadensis HOM05D003482 ORTHO05D004194 2.5e-142 509.6 444 57.0
Lsat_1_v5_gn_5_60480 Lactuca sativa HOM05D003482 ORTHO05D004194 4.0e-140 502.3 450 54.4
HanXRQChr13g0412011 Helianthus annuus HOM05D003482 ORTHO05D004194 1.5e-139 500.4 439 57.2
MD15G1102100 Malus domestica HOM05D003482 ORTHO05D004194 4.8e-138 495.4 416 61.1
Lsat_1_v5_gn_5_60420 Lactuca sativa HOM05D003482 ORTHO05D004194 1.4e-137 493.8 462 53.0
Lsat_1_v5_gn_5_60580 Lactuca sativa HOM05D003482 ORTHO05D004194 1.6e-136 490.3 560 47.9
Pp3c5_19100 Physcomitrium patens HOM05D003482 ORTHO05D004194 1.3e-135 487.3 504 51.6
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 2.3e-132 476.5 440 56.1
SalBow4G3081 Salvia bowleyana HOM05D003482 ORTHO05D004194 3.0e-132 476.1 491 50.9
Pp3c16_18060 Physcomitrium patens HOM05D003482 ORTHO05D004194 5.2e-132 475.3 503 50.7
SMO353G0164 Selaginella moellendorffii HOM05D003482 ORTHO05D004194 9.8e-131 471.1 478 53.3
ECA240G3793 Erigeron canadensis HOM05D003482 ORTHO05D004194 2.2e-130 469.9 441 54.4
AagrBONN_evm.TU.Sc2ySwM_228.3219 Anthoceros agrestis HOM05D003482 ORTHO05D004194 2.9e-127 459.5 462 51.7
Lsat_1_v5_gn_6_15541 Lactuca sativa HOM05D003482 ORTHO05D004194 1.6e-125 453.8 487 50.7
ECA240G2186 Erigeron canadensis HOM05D003482 ORTHO05D004194 2.8e-125 453.0 442 54.1
Mapoly0007s0194 Marchantia polymorpha HOM05D003482 ORTHO05D004194 2.8e-125 453.0 493 49.5
SMO353G0165 Selaginella moellendorffii HOM05D003482 ORTHO05D004194 7.5e-123 444.9 487 49.9
CSS0039275 Camellia sinensis var. sinensis HOM05D003482 ORTHO05D004194 2.4e-121 439.9 263 79.1
AagrBONN_evm.TU.Sc2ySwM_228.3217 Anthoceros agrestis HOM05D003482 ORTHO05D004194 6.1e-117 425.2 429 50.1
TPR.G12040 Trifolium pratense HOM05D003482 ORTHO05D004194 8.9e-116 421.4 397 57.2
HanXRQChr03g0082871 Helianthus annuus HOM05D003482 ORTHO05D004194 4.4e-115 419.1 359 57.7
MD15G1100800 Malus domestica HOM05D003482 ORTHO05D004194 9.8e-115 417.9 439 52.6
HanXRQChr13g0411841 Helianthus annuus HOM05D003482 ORTHO05D004194 2.8e-109 399.8 361 56.0
vmacro05100 Vaccinium macrocarpon HOM05D003482 ORTHO05D004194 1.3e-106 391.0 229 79.0
HanXRQChr13g0407961 Helianthus annuus HOM05D003482 ORTHO05D004194 1.7e-106 390.6 356 57.0
GSVIVG01035556001 Vitis vinifera HOM05D003482 ORTHO05D004194 1.9e-105 387.1 223 80.7
Nitab4.5_0000919g0060 Nicotiana tabacum HOM05D003482 ORTHO05D004194 5.0e-103 379.0 241 72.6
Oeu059294.1 Olea europaea HOM05D003482 ORTHO05D004194 1.5e-102 377.5 229 76.9
HanXRQChr13g0412001 Helianthus annuus HOM05D003482 ORTHO05D004194 1.2e-96 357.8 338 55.6
Potri.018G003600 Populus trichocarpa HOM05D003482 ORTHO05D004194 2.9e-90 336.7 196 80.6
CBR_g4189 Chara braunii HOM05D003482 ORTHO05D004194 1.3e-79 301.2 249 54.2
vmacro05099 Vaccinium macrocarpon HOM05D003482 ORTHO05D004194 2.8e-77 293.5 275 57.1
Sabra18G0012500 Salix brachista HOM05D000009 ORTHO05D000008 3.1e-76 290.0 194 74.7
Potri.018G004500 Populus trichocarpa HOM05D003482 ORTHO05D004194 5.8e-75 285.8 215 65.1
SEGI_21174 Sequoiadendron giganteum HOM05D003482 ORTHO05D004194 6.7e-71 272.3 316 50.0
Solyc08g074280.4 Solanum lycopersicum HOM05D003482 ORTHO05D004194 2.4e-65 253.8 154 75.3
Oeu059293.1 Olea europaea HOM05D003482 ORTHO05D004194 2.7e-64 250.4 241 53.5
Cc00_g11230 Coffea canephora HOM05D003482 ORTHO05D004194 1.1e-57 228.4 262 48.1
SEGI_21512 Sequoiadendron giganteum HOM05D003482 ORTHO05D004194 2.3e-55 220.7 142 65.5
Os06g0701300 Oryza sativa ssp. japonica HOM05D003482 ORTHO05D004194 8.7e-55 218.8 141 75.2
Sabra18G0005800 Salix brachista HOM05D003482 ORTHO05D004194 5.9e-51 206.1 137 70.1
Sabra18G0007800 Salix brachista HOM05D003482 ORTHO05D004194 5.9e-51 206.1 137 70.1
ECA240G1043 Erigeron canadensis HOM05D003482 ORTHO05D004194 1.6e-48 198.0 232 47.0
PSO832G2792 Papaver somniferum HOM05D003482 ORTHO05D004194 3.0e-39 167.2 222 45.5
Lsat_1_v5_gn_7_104720 Lactuca sativa HOM05D003482 ORTHO05D004194 7.4e-38 162.5 107 66.4
Lalb_Chr22g0361021 Lupinus albus HOM05D003482 ORTHO05D004194 3.8e-34 150.2 104 69.2
Nitab4.5_0000502g0210 Nicotiana tabacum HOM05D003482 ORTHO05D019565 3.2e-33 147.1 177 47.5
ECA240G1890 Erigeron canadensis HOM05D003482 ORTHO05D004194 1.4e-31 141.7 97 67.0
HanXRQChr13g0411991 Helianthus annuus HOM05D003482 ORTHO05D004194 3.3e-30 137.1 89 69.7
CDE05G2143 Ceratophyllum demersum HOM05D003482 ORTHO05D004194 8.3e-21 105.9 99 57.6
PSO058G0001 Papaver somniferum HOM05D003482 ORTHO05D004194 2.7e-19 100.9 75 64.0
Sabra18G0012600 Salix brachista HOM05D003482 ORTHO05D010018 4.7e-16 90.1 54 79.6
Lsat_1_v5_gn_5_60340 Lactuca sativa HOM05D003482 ORTHO05D004194 2.0e-14 84.7 61 57.4
AUR62040898 Chenopodium quinoa HOM05D003482 ORTHO05D004194 5.4e-12 76.6 54 68.5
ClCG11G013930 Citrullus lanatus HOM05D003482 ORTHO05D004194 1.2e-11 75.5 56 66.1
Lsat_1_v5_gn_5_60320 Lactuca sativa HOM05D003482 ORTHO05D004194 3.5e-11 73.9 90 50.0
TPR.G13196 Trifolium pratense HOM05D003482 ORTHO05D004194 2.3e-10 71.2 55 63.6
CBR_g40631 Chara braunii HOM05D002830 ORTHO05D002258 3.3e-09 67.4 141 31.9
Sabra18G0010300 Salix brachista HOM05D003482 ORTHO05D003343 3.3e-09 67.4 37 81.1
Mapoly0048s0069 Marchantia polymorpha HOM05D022213 ORTHO05D002258 9.5e-09 65.9 137 30.7
Potri.012G082950 Populus trichocarpa HOM05D003482 ORTHO05D004194 9.5e-09 65.9 47 63.8
SEGI_08227 Sequoiadendron giganteum HOM05D003482 ORTHO05D004194 1.8e-07 61.6 56 53.6
CBR_g24186 Chara braunii HOM05D003482 ORTHO05D043602 2.3e-07 61.2 177 26.0


User provided reference genes

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