Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI34G0307 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 9.1e-193 676.8 356 100.0
Ciclev10008755m.g Citrus clementina HOM05D002335 ORTHO05D006282 2.3e-143 512.7 348 79.0
CiPaw.04G143000 Carya illinoinensis HOM05D002335 ORTHO05D006282 1.9e-142 509.6 353 76.2
Cfa002987 Carpinus fangiana HOM05D002335 ORTHO05D006282 7.3e-142 507.7 355 75.2
Hma1.2p1_0169F.1_g074510 Hydrangea macrophylla HOM05D002335 ORTHO05D006282 2.4e-140 502.7 345 77.1
FvH4_1g08690 Fragaria vesca HOM05D002335 ORTHO05D006282 1.5e-139 500.0 359 75.5
Potri.018G056500 Populus trichocarpa HOM05D002335 ORTHO05D006282 2.6e-139 499.2 355 74.9
Gohir.D13G196375 Gossypium hirsutum HOM05D002335 ORTHO05D006282 6.4e-138 494.6 356 74.4
Gorai.013G224300 Gossypium raimondii HOM05D002335 ORTHO05D006282 1.6e-136 490.0 357 74.2
Gohir.A13G190800 Gossypium hirsutum HOM05D002335 ORTHO05D006282 1.3e-135 486.9 356 73.3
Glyma.15G177700 Glycine max HOM05D002335 ORTHO05D006282 3.9e-135 485.3 353 72.8
Migut.J00924 Erythranthe guttata HOM05D002335 ORTHO05D006282 1.1e-132 477.2 347 73.8
Manes.16G095200 Manihot esculenta HOM05D002335 ORTHO05D006282 1.4e-132 476.9 353 73.7
VMungo1309G0226 Vigna mungo HOM05D002335 ORTHO05D006282 1.4e-132 476.9 353 71.4
Dinv42395 Davidia involucrata HOM05D002335 ORTHO05D006282 3.4e-131 472.2 357 73.1
ClCG03G015070 Citrullus lanatus HOM05D002335 ORTHO05D006282 1.7e-130 469.9 351 71.2
Duzib187G0696 Durio zibethinus HOM05D002335 ORTHO05D006282 4.9e-130 468.4 355 71.5
Phvul.009G227200 Phaseolus vulgaris HOM05D002335 ORTHO05D006282 4.9e-130 468.4 342 72.8
TPR.G27760 Trifolium pratense HOM05D002335 ORTHO05D006282 8.4e-130 467.6 350 71.7
Dinv25558 Davidia involucrata HOM05D002335 ORTHO05D006282 1.1e-129 467.2 342 74.6
GSVIVG01015081001 Vitis vinifera HOM05D002335 ORTHO05D006282 1.1e-129 467.2 356 70.5
Thecc.09G076700 Theobroma cacao HOM05D002335 ORTHO05D006282 1.9e-129 466.5 355 71.0
MD02G1091400 Malus domestica HOM05D002335 ORTHO05D006282 2.5e-129 466.1 357 71.4
Solyc12g009100.2 Solanum lycopersicum HOM05D002335 ORTHO05D006282 2.1e-128 463.0 348 69.5
Sed0016034 Sechium edule HOM05D002335 ORTHO05D006282 2.7e-128 462.6 351 70.4
Sopen12g004050 Solanum pennellii HOM05D002335 ORTHO05D006282 2.7e-128 462.6 348 69.8
Glyma.09G069700 Glycine max HOM05D002335 ORTHO05D006282 4.6e-128 461.8 353 70.5
Lj6g0009960 Lotus japonicus HOM05D002335 ORTHO05D006282 1.0e-127 460.7 354 70.3
THA.LOC104815334 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 1.0e-127 460.7 349 71.6
Sabra18G0052300 Salix brachista HOM05D002335 ORTHO05D006282 1.3e-127 460.3 434 61.1
Eucgr.C03328 Eucalyptus grandis HOM05D002335 ORTHO05D006282 1.8e-127 459.9 347 71.2
CSS0005090 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006282 3.0e-127 459.1 348 71.3
Peaxi162Scf00928g00036 Petunia axillaris HOM05D002335 ORTHO05D006282 6.7e-127 458.0 331 72.2
FAN26G1551 Fragaria x ananassa HOM05D002335 ORTHO05D006282 1.1e-126 457.2 359 70.8
FAN28G1803 Fragaria x ananassa HOM05D002335 ORTHO05D006282 3.3e-126 455.7 359 70.5
RcHm_v2.0_Chr2g0095141 Rosa chinensis HOM05D002335 ORTHO05D006282 1.3e-125 453.8 350 70.0
BcaB06g26879 Brassica carinata HOM05D002335 ORTHO05D006282 2.1e-125 453.0 356 70.8
Haze_26014 Corylus avellana HOM05D002335 ORTHO05D006282 3.7e-125 452.2 391 65.2
Aa31sc133G10 Aethionema arabicum HOM05D002335 ORTHO05D006282 6.2e-125 451.4 343 70.8
CANSAT56G2952 Cannabis sativa HOM05D002335 ORTHO05D006282 6.2e-125 451.4 364 69.5
COL.COLO4_18096 Corchorus olitorius HOM05D002335 ORTHO05D006282 3.1e-124 449.1 355 69.3
PSO135G0390 Papaver somniferum HOM05D002335 ORTHO05D006282 5.3e-124 448.4 347 67.7
Nn8g38636 Nelumbo nucifera HOM05D002335 ORTHO05D006282 2.0e-123 446.4 353 67.7
PSO724G0129 Papaver somniferum HOM05D002335 ORTHO05D006282 3.4e-123 445.7 347 66.9
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 1.0e-122 444.1 356 69.4
Ca_02205_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006282 1.0e-122 444.1 353 68.8
TAR383G0969 Trochodendron aralioides HOM05D002335 ORTHO05D006282 2.2e-122 443.0 347 68.3
BcaC06g35950 Brassica carinata HOM05D002335 ORTHO05D006282 3.8e-122 442.2 356 69.4
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 6.5e-122 441.4 342 71.1
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 6.5e-122 441.4 342 71.1
TWI63G1279 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 6.5e-122 441.4 356 71.9
HanXRQChr04g0126011 Helianthus annuus HOM05D002335 ORTHO05D006282 9.3e-121 437.6 348 67.8
MBI19_g16223_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006282 9.3e-121 437.6 351 67.0
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 1.6e-120 436.8 358 68.4
Duzib168G0796 Durio zibethinus HOM05D002335 ORTHO05D006282 1.6e-120 436.8 339 69.3
Sp6g23900 Schrenkiella parvula HOM05D002335 ORTHO05D006282 2.7e-120 436.0 348 67.5
Carub.0003s2712 Capsella rubella HOM05D002335 ORTHO05D006282 6.1e-120 434.9 356 68.3
MD15G1217700 Malus domestica HOM05D002335 ORTHO05D006282 7.9e-120 434.5 325 72.6
Thhalv10014003m.g Eutrema salsugineum HOM05D002335 ORTHO05D006282 1.3e-119 433.7 342 67.8
MSTRG.19458 Avicennia marina HOM05D002335 ORTHO05D006282 1.8e-119 433.3 347 68.0
Sp3g24570 Schrenkiella parvula HOM05D002335 ORTHO05D006282 2.3e-119 433.0 354 67.8
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 5.1e-119 431.8 345 67.8
BraA03t10325Z Brassica rapa HOM05D002335 ORTHO05D006282 5.1e-119 431.8 348 67.2
AL6G32120 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 8.7e-119 431.0 352 66.5
AUR62028934 Chenopodium quinoa HOM05D002335 ORTHO05D006282 8.7e-119 431.0 355 65.1
AT5G20580 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 3.3e-118 429.1 352 66.5
THA.LOC104799620 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 4.3e-118 428.7 333 69.4
Carub.0006s1891 Capsella rubella HOM05D002335 ORTHO05D006282 5.7e-118 428.3 352 66.5
Aqoxy7G04129 Aquilegia oxysepala HOM05D002335 ORTHO05D006282 7.4e-118 427.9 347 66.0
EL10Ac8g19056 Beta vulgaris HOM05D002335 ORTHO05D006282 1.3e-117 427.2 383 61.9
Cc06_g12190 Coffea canephora HOM05D002335 ORTHO05D006282 1.3e-117 427.2 347 66.0
CsaV3_1G041060 Cucumis sativus L. HOM05D002335 ORTHO05D006282 2.2e-117 426.4 351 67.0
Eucgr.C03263 Eucalyptus grandis HOM05D002335 ORTHO05D006282 2.2e-117 426.4 321 71.7
AL3G43580 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 2.8e-117 426.0 355 67.0
Manes.03G040500 Manihot esculenta HOM05D002335 ORTHO05D006282 3.7e-117 425.6 354 67.2
Medtr2g041690 Medicago truncatula HOM05D002335 ORTHO05D006282 3.7e-117 425.6 353 65.7
ATR0598G025 Amborella trichopoda HOM05D002335 ORTHO05D006282 8.2e-117 424.5 347 64.3
MELO3C015522.2 Cucumis melo HOM05D002335 ORTHO05D006282 1.8e-116 423.3 351 66.4
ECA236G4601 Erigeron canadensis HOM05D002335 ORTHO05D006282 9.0e-116 421.0 340 66.2
Prupe.7G198700 Prunus persica HOM05D002335 ORTHO05D006282 4.5e-115 418.7 355 66.8
SalBow6G4624 Salvia bowleyana HOM05D002335 ORTHO05D006282 4.5e-115 418.7 302 74.5
Actinidia29935 Actinidia chinensis HOM05D002335 ORTHO05D006282 1.0e-114 417.5 336 68.5
Lsat_1_v5_gn_8_86481 Lactuca sativa HOM05D002335 ORTHO05D006282 1.0e-114 417.5 346 64.2
Atru.chr7.1708 Acer truncatum HOM05D002335 ORTHO05D006282 2.9e-114 416.0 285 76.5
SGA_v2.0_scaffold308G48076 Striga asiatica HOM05D002335 ORTHO05D006282 9.4e-113 411.0 366 63.9
QL11p000781 Quercus lobata HOM05D002335 ORTHO05D006282 2.1e-112 409.8 374 63.9
AUR62025250 Chenopodium quinoa HOM05D002335 ORTHO05D006282 8.8e-111 404.4 336 64.9
HPP92_004364 Vanilla planifolia HOM05D002335 ORTHO05D006282 2.5e-110 402.9 351 60.7
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 5.7e-110 401.7 299 69.2
Nitab4.5_0011754g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006282 9.7e-110 401.0 347 64.6
PGR044G1875 Punica granatum HOM05D002335 ORTHO05D006282 5.3e-108 395.2 295 71.9
CAN.G1661.12 Capsicum annuum HOM05D002335 ORTHO05D006282 6.5e-106 388.3 349 62.5
vmacro06343 Vaccinium macrocarpon HOM05D002335 ORTHO05D006282 1.4e-103 380.6 416 56.7
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 5.1e-103 378.6 299 68.2
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 5.7e-102 375.2 334 62.3
CARHR192220 Cardamine hirsuta HOM05D002335 ORTHO05D006282 7.4e-102 374.8 297 67.3
Sopen07g021360 Solanum pennellii HOM05D002335 ORTHO05D006282 4.8e-101 372.1 333 62.5
CARHR103630 Cardamine hirsuta HOM05D002335 ORTHO05D006282 2.4e-100 369.8 299 69.2
Psat1g134320 Pisum sativum HOM05D002335 ORTHO05D006282 7.0e-100 368.2 270 72.6
arahy.Tifrunner.gnm1.ann1.UHGN3W Arachis hypogaea HOM05D002335 ORTHO05D006282 1.2e-99 367.5 343 61.2
Zm00001eb256890 Zea mays HOM05D002335 ORTHO05D006282 5.9e-99 365.2 348 56.0
AT2G06005 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 1.4e-95 354.0 295 67.5
Aa31LG1G14100 Aethionema arabicum HOM05D002335 ORTHO05D006282 3.7e-93 345.9 441 48.8
Cpa.g.sc28.33 Carica papaya HOM05D002335 ORTHO05D006282 1.8e-92 343.6 231 77.5
Nitab4.5_0000073g0170 Nicotiana tabacum HOM05D002335 ORTHO05D006282 3.1e-92 342.8 401 52.1
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 4.1e-92 342.4 401 54.9
SEGI_06962 Sequoiadendron giganteum HOM05D002335 ORTHO05D006282 1.7e-90 337.0 340 54.4
Psat3g025000 Pisum sativum HOM05D002335 ORTHO05D006282 8.5e-90 334.7 250 71.6
HPP92_004366 Vanilla planifolia HOM05D002335 ORTHO05D006282 2.7e-88 329.7 351 52.7
FAN23G1616 Fragaria x ananassa HOM05D002335 ORTHO05D006282 3.1e-84 316.2 249 70.7
Lj7C687T14 Lonicera japonica HOM05D002335 ORTHO05D006282 4.1e-84 315.8 258 67.8
SHI23809 Sapria himalayana HOM05D002335 ORTHO05D006282 5.4e-84 315.5 235 71.9
Nitab4.5_0009436g0040 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.6e-83 313.9 413 50.1
Sc18g0002560 Simmondsia chinensis HOM05D002335 ORTHO05D006282 5.5e-81 305.4 246 67.1
CDE02G0868 Ceratophyllum demersum HOM05D002335 ORTHO05D006282 6.1e-80 302.0 231 67.1
Peaxi162Scf00127g01814 Petunia axillaris HOM05D002335 ORTHO05D006282 5.6e-73 278.9 248 64.9
CAN.G404.48 Capsicum annuum HOM05D002335 ORTHO05D006282 4.7e-72 275.8 304 54.6
Lalb_Chr23g0276371 Lupinus albus HOM05D002335 ORTHO05D006282 2.9e-69 266.5 206 68.4
arahy.Tifrunner.gnm1.ann1.3UYF95 Arachis hypogaea HOM05D002335 ORTHO05D006282 2.7e-67 260.0 225 63.1
Mapoly0011s0025 Marchantia polymorpha HOM05D002335 ORTHO05D006282 1.0e-66 258.1 340 43.8
Lalb_Chr07g0181191 Lupinus albus HOM05D002335 ORTHO05D006282 3.9e-66 256.1 240 58.3
DCAR_028335 Daucus carota HOM05D002335 ORTHO05D006282 4.7e-64 249.2 187 71.1
Pp3c22_13730 Physcomitrium patens HOM05D002335 ORTHO05D006282 6.2e-64 248.8 341 45.5
Pp3c2_6470 Physcomitrium patens HOM05D002335 ORTHO05D006282 1.3e-58 231.1 342 41.2
MD02G1091600 Malus domestica HOM05D002335 ORTHO05D006282 3.0e-50 203.4 152 70.4
Actinidia38482 Actinidia chinensis HOM05D002335 ORTHO05D006282 2.5e-49 200.3 150 71.3
Lalb_Chr23g0276381 Lupinus albus HOM05D002335 ORTHO05D006282 2.1e-48 197.2 141 75.9
SMO358G0254 Selaginella moellendorffii HOM05D002335 ORTHO05D006282 6.4e-45 185.7 196 53.6
Lalb_Chr07g0181181 Lupinus albus HOM05D002335 ORTHO05D006282 2.3e-42 177.2 167 59.9
Nitab4.5_0000343g0220 Nicotiana tabacum HOM05D002335 ORTHO05D006282 2.9e-37 160.2 130 67.7
Cpa.g.sc28.37 Carica papaya HOM05D002335 ORTHO05D006282 1.3e-32 144.8 102 76.5
AagrBONN_evm.TU.Sc2ySwM_344.5493 Anthoceros agrestis HOM05D002335 ORTHO05D006282 2.1e-32 144.1 323 31.9
Nitab4.5_0000343g0210 Nicotiana tabacum HOM05D002335 ORTHO05D006282 2.4e-31 140.6 100 73.0
Actinidia38481 Actinidia chinensis HOM05D002335 ORTHO05D006282 4.5e-30 136.3 118 66.1
Ah.14g084930 Amaranthus hybridus HOM05D002335 ORTHO05D006282 3.4e-22 110.2 85 65.9
Solyc07g041890.1 Solanum lycopersicum HOM05D002335 ORTHO05D006282 4.5e-22 109.8 176 45.5
Medtr2g041390 Medicago truncatula HOM05D002335 ORTHO05D006282 9.3e-20 102.1 107 54.2
CBR_g26318 Chara braunii HOM05D002335 ORTHO05D006282 2.1e-19 100.9 219 33.3
arahy.Tifrunner.gnm1.ann1.HK8DFN Arachis hypogaea HOM05D002335 ORTHO05D006282 4.3e-17 93.2 101 55.4
Oeu031390.1 Olea europaea HOM05D002335 ORTHO05D006282 6.9e-15 85.9 50 84.0
Oeu011491.2 Olea europaea HOM05D002335 ORTHO05D006282 7.6e-14 82.4 80 56.2
Psat6g064600 Pisum sativum HOM05D004726 ORTHO05D005986 1.9e-12 77.8 53 73.6
Cpa.g.c47777 Carica papaya HOM05D002335 ORTHO05D006282 4.2e-12 76.6 52 75.0
PGSC0003DMG400019032 Solanum tuberosum HOM05D002335 ORTHO05D006282 6.0e-11 72.8 56 64.3
PSO210G7126 Papaver somniferum HOM05D002335 ORTHO05D006282 3.9e-10 70.1 70 52.9
CAN.G2458.1 Capsicum annuum HOM05D002335 ORTHO05D006282 4.8e-08 63.2 74 50.0
arahy.Tifrunner.gnm1.ann1.S4WZ34 Arachis hypogaea HOM05D000237 ORTHO05D017465 1.1e-07 62.0 59 55.9
FvH4_1g08700 Fragaria vesca HOM05D000069 ORTHO05D021424 1.8e-07 61.2 44 68.2
arahy.Tifrunner.gnm1.ann1.WCUD5S Arachis hypogaea HOM05D000237 ORTHO05D017465 3.1e-07 60.5 69 52.2
arahy.Tifrunner.gnm1.ann1.2X24PF Arachis hypogaea HOM05D002335 ORTHO05D006282 7.6e-06 55.8 33 78.8


User provided reference genes

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