Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 0.0e+00 1440.6 1009 100.0
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 0.0e+00 1282.3 1015 89.0
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.3e-263 913.7 1040 69.2
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 3.4e-261 905.6 1042 73.1
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 1.7e-260 903.3 1019 70.0
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 7.9e-258 894.4 1045 71.8
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 1.3e-257 893.6 1039 71.3
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 8.2e-255 884.4 920 74.0
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 6.9e-246 854.7 1048 68.3
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 1.0e-244 850.9 1021 69.3
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 1.1e-243 847.4 1024 70.5
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 9.4e-243 844.3 1108 65.1
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 2.3e-241 839.7 1051 70.2
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 1.5e-240 837.0 1032 65.7
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 3.7e-239 832.4 931 72.1
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 1.7e-236 823.5 941 69.4
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 1.5e-235 820.5 1017 70.0
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 7.2e-235 818.1 1024 69.3
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.2e-234 817.4 1024 69.3
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 4.7e-234 815.5 1032 60.4
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 3.0e-233 812.8 1021 69.2
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 4.0e-233 812.4 1021 69.1
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 6.7e-233 811.6 1028 69.3
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 2.0e-232 810.1 1037 69.8
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 3.3e-232 809.3 909 74.6
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 3.1e-230 802.7 889 72.9
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 4.1e-230 802.4 1019 68.7
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.5e-227 793.1 1019 66.9
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 3.2e-227 792.7 1019 67.7
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 4.7e-226 788.9 889 67.5
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 8.0e-226 788.1 891 74.3
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 2.6e-224 783.1 908 73.0
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 2.6e-224 783.1 1017 64.3
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 4.1e-222 775.8 1016 68.7
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 1.6e-221 773.9 909 72.9
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 3.5e-221 772.7 1027 63.0
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 2.2e-220 770.0 888 74.4
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 4.7e-218 762.3 934 71.5
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 3.0e-217 759.6 1036 66.8
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.2e-216 757.7 891 73.0
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.2e-216 757.7 891 73.0
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 5.7e-216 755.4 1019 65.7
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 6.3e-215 751.9 989 69.8
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 2.4e-214 750.0 816 71.3
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 3.1e-214 749.6 910 70.2
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 4.1e-214 749.2 1050 66.3
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 1.2e-213 747.7 821 77.1
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 3.5e-213 746.1 872 72.9
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 2.3e-212 743.4 969 67.0
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 6.6e-212 741.9 911 71.4
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 3.3e-211 739.6 912 71.5
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 1.2e-210 737.6 1024 64.5
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 4.0e-209 732.6 893 71.4
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 2.6e-208 729.9 920 68.8
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 2.6e-208 729.9 1007 59.5
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 7.5e-208 728.4 987 69.2
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 1.3e-207 727.6 854 74.7
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 6.4e-207 725.3 1033 65.9
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 1.4e-206 724.2 1007 64.4
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 2.4e-206 723.4 907 67.7
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 1.6e-205 720.7 1014 65.1
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 3.5e-205 719.5 1020 63.9
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 4.6e-205 719.2 925 67.7
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 5.0e-204 715.7 814 75.6
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.1e-203 714.5 892 70.6
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 5.6e-203 712.2 839 71.3
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.8e-201 707.2 904 68.1
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 2.3e-201 706.8 924 68.7
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 4.0e-201 706.1 816 71.3
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 5.2e-201 705.7 954 66.4
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 6.8e-201 705.3 911 67.7
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 8.9e-201 704.9 1018 63.3
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 1.7e-199 700.7 910 68.8
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 1.7e-199 700.7 819 69.8
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 1.1e-198 698.0 821 69.8
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 5.4e-198 695.7 1029 61.4
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.2e-197 694.5 820 72.6
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 1.2e-197 694.5 906 68.9
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 2.0e-197 693.7 812 74.8
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 2.7e-197 693.3 884 68.8
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 4.6e-197 692.6 1061 61.1
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 6.0e-197 692.2 1038 60.1
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 3.0e-196 689.9 814 70.6
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 8.6e-196 688.3 874 68.4
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 3.6e-194 682.9 905 62.2
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 6.8e-193 678.7 901 68.8
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 6.8e-193 678.7 901 68.8
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 2.6e-192 676.8 913 66.3
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 3.4e-192 676.4 910 68.0
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 4.4e-192 676.0 1034 61.5
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 2.2e-191 673.7 847 70.4
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 2.2e-191 673.7 925 65.2
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 1.1e-190 671.4 913 67.7
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 1.4e-190 671.0 902 68.5
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 1.4e-190 671.0 952 65.8
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 2.4e-190 670.2 1006 63.3
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 3.2e-190 669.8 893 69.2
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 1.3e-188 664.5 1016 61.1
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 1.3e-188 664.5 849 64.5
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 1.5e-187 661.0 890 66.3
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 2.5e-187 660.2 1029 62.6
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 7.3e-187 658.7 1018 62.3
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 7.3e-187 658.7 891 65.1
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 6.2e-186 655.6 936 65.3
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 8.1e-186 655.2 787 70.8
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 2.6e-184 650.2 1024 61.8
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 3.8e-183 646.4 1024 58.9
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 7.1e-182 642.1 909 63.7
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 3.5e-181 639.8 856 68.9
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 3.5e-181 639.8 861 59.3
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 6.0e-181 639.0 825 65.0
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 2.3e-180 637.1 856 66.7
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 1.9e-179 634.0 887 67.3
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 2.8e-178 630.2 1014 60.8
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 8.1e-178 628.6 1034 56.1
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 2.6e-176 623.6 1014 53.2
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 9.3e-174 615.1 880 65.1
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 6.0e-173 612.5 856 68.6
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 2.8e-170 603.6 820 67.2
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 3.1e-169 600.1 934 62.4
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 2.2e-167 594.0 841 59.8
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 2.9e-167 593.6 741 65.9
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 3.8e-167 593.2 841 59.6
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 3.8e-167 593.2 841 59.6
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 3.0e-164 583.6 903 62.5
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 2.5e-163 580.5 806 62.0
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 2.5e-163 580.5 686 81.3
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 7.4e-163 578.9 900 57.4
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 2.4e-161 573.9 817 63.4
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 9.0e-161 572.0 790 65.3
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 6.4e-159 565.8 988 53.8
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 1.4e-158 564.7 814 67.4
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.3e-156 557.4 687 71.5
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 4.3e-155 553.1 1016 51.9
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 4.0e-153 546.6 890 56.0
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 5.8e-152 542.7 889 56.5
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 8.4e-151 538.9 890 56.0
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 1.9e-150 537.7 821 63.5
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 4.3e-147 526.6 804 59.0
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 1.3e-143 515.0 814 61.1
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 3.8e-143 513.5 888 55.1
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 3.9e-132 476.9 723 63.9
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 2.0e-128 464.5 919 51.3
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 2.5e-126 457.6 792 47.1
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 5.7e-123 446.4 923 49.4
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 4.8e-122 443.4 654 72.0
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 4.8e-122 443.4 811 54.0
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 7.5e-115 419.5 912 44.6
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 3.6e-109 400.6 860 55.1
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 8.0e-109 399.4 703 55.9
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 3.1e-105 387.5 1013 34.6
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 3.5e-104 384.0 928 44.4
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 1.6e-101 375.2 1303 32.5
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 5.4e-97 360.1 433 73.7
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 3.8e-95 354.0 648 68.7
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 9.5e-94 349.4 947 46.6
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 1.7e-87 328.6 458 49.8
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.9e-86 325.1 427 56.9
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 4.4e-83 313.9 618 61.8
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 1.3e-82 312.4 749 49.1
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 1.2e-80 305.8 652 54.8
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 6.2e-77 293.5 272 66.2
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 2.7e-72 278.1 407 48.9
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 6.0e-56 223.8 311 76.2
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 1.1e-54 219.5 226 52.2
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 1.1e-54 219.5 146 75.3
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.7e-48 198.4 216 52.3
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 4.0e-44 184.5 335 40.3
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 3.3e-38 164.9 123 69.1
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 5.1e-31 141.0 119 59.7
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 1.6e-29 136.0 83 78.3
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 2.4e-28 132.1 88 77.3
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 2.5e-17 95.5 66 78.8
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 1.4e-15 89.7 193 34.7
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 1.4e-12 79.7 62 59.7
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 8.8e-07 60.5 165 29.7
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 2.6e-06 58.9 226 68.1
Sc09g0009810 Simmondsia chinensis HOM05D003722 ORTHO05D004589 7.4e-06 57.4 56 53.6


User provided reference genes

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