Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 6.3e-91 337.8 221 100.0
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 4.7e-54 215.3 218 68.8
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 8.0e-54 214.5 153 72.5
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 4.4e-52 208.8 153 71.2
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 1.3e-51 207.2 153 68.0
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 6.3e-51 204.9 153 69.9
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 5.9e-49 198.4 127 77.2
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 5.0e-48 195.3 125 75.2
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 1.5e-47 193.7 119 73.9
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 3.2e-47 192.6 123 76.4
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 5.5e-47 191.8 134 69.4
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 5.5e-47 191.8 131 72.5
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 5.5e-47 191.8 150 66.0
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 7.2e-47 191.4 134 71.6
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 9.5e-47 191.0 136 72.1
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 1.2e-46 190.7 154 68.8
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 2.7e-46 189.5 134 70.9
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 6.1e-46 188.3 138 69.6
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 1.8e-45 186.8 125 72.8
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 2.3e-45 186.4 133 72.2
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 5.2e-45 185.3 152 64.5
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 8.8e-45 184.5 137 67.9
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 2.6e-44 183.0 129 71.3
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 7.5e-44 181.4 129 71.3
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 9.8e-44 181.0 129 72.1
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 3.7e-43 179.1 128 71.9
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 4.9e-43 178.7 126 68.3
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 4.9e-43 178.7 129 69.0
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 4.9e-43 178.7 129 69.0
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 6.3e-43 178.3 128 68.8
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 3.1e-42 176.0 129 67.4
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 4.1e-42 175.6 122 71.3
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 3.5e-41 172.6 126 71.4
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 3.5e-41 172.6 128 69.5
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 4.5e-41 172.2 136 62.5
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 5.9e-41 171.8 129 68.2
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 1.3e-40 170.6 146 61.0
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 2.3e-40 169.9 136 60.3
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.3e-40 169.9 129 68.2
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 8.6e-40 167.9 114 71.9
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 1.5e-39 167.2 135 62.2
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 1.5e-39 167.2 135 62.2
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 1.5e-39 167.2 154 55.2
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 1.9e-39 166.8 116 69.0
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 2.5e-39 166.4 129 62.8
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 5.6e-39 165.2 130 67.7
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 7.3e-39 164.9 92 81.5
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 9.5e-39 164.5 152 58.6
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 1.2e-38 164.1 130 65.4
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 1.2e-38 164.1 136 61.8
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.6e-38 163.7 130 66.2
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.6e-38 163.7 131 66.4
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 8.0e-38 161.4 123 64.2
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 4.0e-37 159.1 126 64.3
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 1.2e-36 157.5 98 75.5
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 1.5e-36 157.1 126 61.9
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 1.5e-36 157.1 126 61.9
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 1.5e-36 157.1 122 65.6
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 1.5e-36 157.1 93 81.7
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 2.0e-36 156.8 90 75.6
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 2.6e-36 156.4 129 62.8
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 5.7e-36 155.2 110 68.2
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 5.7e-36 155.2 126 61.1
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 7.5e-36 154.8 122 65.6
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 7.5e-36 154.8 122 65.6
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 9.8e-36 154.5 121 64.5
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 1.7e-35 153.7 136 58.8
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 1.7e-35 153.7 105 70.5
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 1.7e-35 153.7 86 79.1
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 3.7e-35 152.5 110 69.1
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 4.9e-35 152.1 98 72.4
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 4.9e-35 152.1 120 65.8
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 4.9e-35 152.1 139 57.6
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 4.9e-35 152.1 101 76.2
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 6.4e-35 151.8 122 64.8
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 6.4e-35 151.8 122 64.8
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 8.3e-35 151.4 120 62.5
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 1.1e-34 151.0 110 68.2
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 1.1e-34 151.0 122 63.9
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 5.4e-34 148.7 94 77.7
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 5.4e-34 148.7 97 75.3
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 9.2e-34 147.9 96 76.0
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 9.2e-34 147.9 119 62.2
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.2e-33 147.5 98 74.5
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 1.6e-33 147.1 128 59.4
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 4.6e-33 145.6 208 51.4
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.7e-32 143.7 126 56.3
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 5.0e-32 142.1 90 76.7
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 1.9e-31 140.2 144 53.5
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 2.5e-31 139.8 120 60.0
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 5.6e-31 138.7 85 76.5
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 5.6e-31 138.7 101 64.4
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 5.6e-31 138.7 98 70.4
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 1.2e-30 137.5 83 83.1
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 2.1e-30 136.7 78 85.9
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 8.0e-30 134.8 121 64.5
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 4.0e-29 132.5 117 56.4
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 5.2e-29 132.1 89 69.7
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 6.8e-29 131.7 81 77.8
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 7.5e-28 128.3 94 72.3
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 1.3e-27 127.5 135 50.4
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 1.3e-27 127.5 86 74.4
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 1.7e-27 127.1 94 71.3
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 1.1e-26 124.4 128 51.6
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 7.0e-26 121.7 126 52.4
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 9.2e-26 121.3 75 78.7
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 1.1e-23 114.4 78 74.4
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 1.1e-23 114.4 63 79.4
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 1.1e-23 114.4 83 63.9
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 1.9e-23 113.6 131 46.6
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 4.3e-23 112.5 93 57.0
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 5.6e-23 112.1 119 51.3
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 9.5e-23 111.3 96 54.2
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 3.6e-22 109.4 113 52.2
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 3.6e-22 109.4 85 57.6
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 4.7e-22 109.0 72 75.0
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 8.1e-22 108.2 61 80.3
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 1.8e-21 107.1 67 79.1
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 2.3e-21 106.7 156 44.2
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 5.2e-21 105.5 132 46.2
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 1.5e-20 104.0 95 55.8
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 1.5e-20 104.0 95 55.8
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 2.0e-20 103.6 93 57.0
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.4e-20 102.8 68 76.5
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 9.8e-20 101.3 129 50.4
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 2.2e-19 100.1 91 60.4
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 8.3e-19 98.2 66 69.7
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 4.1e-18 95.9 97 54.6
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 1.2e-17 94.4 73 67.1
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 1.6e-17 94.0 114 46.5
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.6e-17 94.0 91 49.5
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 4.6e-17 92.4 62 77.4
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 1.1e-15 87.8 67 65.7
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 1.5e-15 87.4 54 83.3
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 1.5e-15 87.4 112 45.5
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.9e-15 87.0 73 67.1
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 4.3e-15 85.9 119 43.7
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 5.6e-15 85.5 74 59.5
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 7.3e-15 85.1 145 42.1
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 9.5e-15 84.7 77 46.8
RcHm_v2.0_Chr6g0246681 Rosa chinensis HOM05D003803 ORTHO05D004456 1.6e-14 84.0 60 65.0
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 3.1e-13 79.7 139 38.8
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 4.0e-13 79.3 124 39.5
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 5.2e-13 79.0 45 82.2
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 6.8e-13 78.6 92 50.0
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 6.8e-13 78.6 99 48.5
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 8.9e-13 78.2 44 86.4
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 1.2e-12 77.8 134 42.5
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 1.2e-12 77.8 61 68.9
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 1.5e-12 77.4 47 80.9
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 2.6e-12 76.6 126 39.7
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 3.4e-12 76.3 74 52.7
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 4.4e-12 75.9 126 42.1
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 5.8e-12 75.5 49 79.6
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 9.9e-12 74.7 50 66.0
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 9.9e-12 74.7 77 51.9
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 9.9e-12 74.7 49 81.6
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 1.7e-11 73.9 42 83.3
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 1.7e-11 73.9 45 82.2
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 2.9e-11 73.2 47 80.9
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.8e-11 72.8 50 78.0
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 8.4e-11 71.6 74 54.1
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 8.4e-11 71.6 99 39.4
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 1.1e-10 71.2 61 62.3
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 1.4e-10 70.9 38 86.8
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 7.1e-10 68.6 49 73.5
BcaB05g22827 Brassica carinata HOM05D003803 ORTHO05D004456 9.2e-10 68.2 49 73.5
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 1.6e-09 67.4 52 65.4
Oeu060649.1 Olea europaea HOM05D003803 ORTHO05D004456 1.7e-08 63.9 46 71.7
ATR0626G331 Amborella trichopoda HOM05D002369 ORTHO05D002435 1.9e-07 60.5 72 44.4
Thhalv10021823m.g Eutrema salsugineum HOM05D002369 ORTHO05D002435 2.1e-06 57.0 55 47.3
AagrBONN_evm.TU.Sc2ySwM_362.2112 Anthoceros agrestis HOM05D002369 ORTHO05D002435 2.8e-06 56.6 64 37.5
THA.LOC104808881 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 3.6e-06 56.2 52 57.7
Actinidia08457 Actinidia chinensis HOM05D002369 ORTHO05D002435 4.7e-06 55.8 81 34.6
Lsat_1_v5_gn_5_140420 Lactuca sativa HOM05D003803 ORTHO05D004456 6.2e-06 55.5 51 52.9
CAN.G749.11 Capsicum annuum HOM05D002369 ORTHO05D002435 8.1e-06 55.1 56 44.6
Oeu043467.1 Olea europaea HOM05D002369 ORTHO05D002435 8.1e-06 55.1 56 44.6


User provided reference genes

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