Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 9.2e-102 373.6 198 100.0
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 9.3e-86 320.5 202 83.7
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 4.0e-73 278.5 200 72.0
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 3.4e-72 275.4 200 71.5
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 1.3e-71 273.5 200 71.0
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 1.1e-70 270.4 200 70.5
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 7.1e-70 267.7 195 72.8
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 2.1e-69 266.2 200 69.0
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 2.7e-69 265.8 199 68.3
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 8.7e-68 260.8 194 70.6
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 2.5e-67 259.2 198 68.7
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 9.6e-67 257.3 198 67.2
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 2.8e-66 255.8 199 67.8
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 4.8e-66 255.0 200 66.5
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 1.1e-65 253.8 200 68.0
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 5.3e-65 251.5 199 66.8
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 6.9e-65 251.1 200 67.0
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 6.9e-65 251.1 202 65.8
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 1.5e-64 250.0 200 67.0
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 2.6e-64 249.2 190 67.9
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 5.8e-64 248.1 194 66.5
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 5.8e-64 248.1 194 66.5
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 2.2e-63 246.1 200 65.5
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 2.9e-63 245.7 200 64.0
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 4.9e-63 245.0 200 65.0
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 8.4e-63 244.2 200 65.0
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 1.9e-62 243.0 202 63.9
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 2.5e-62 242.7 198 64.6
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 4.2e-62 241.9 200 63.5
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 4.2e-62 241.9 189 66.1
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 7.1e-62 241.1 198 63.1
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 2.1e-61 239.6 201 61.2
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 3.5e-61 238.8 200 61.5
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.3e-60 236.9 198 62.1
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 3.0e-60 235.7 174 70.1
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 3.9e-60 235.3 197 64.0
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 1.9e-59 233.0 191 63.4
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 3.3e-59 232.3 203 60.6
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 4.3e-59 231.9 195 61.5
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 2.1e-58 229.6 196 61.7
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 4.8e-58 228.4 200 57.5
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 1.8e-57 226.5 200 57.5
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 4.1e-57 225.3 196 59.2
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 6.9e-57 224.6 206 59.2
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 9.0e-57 224.2 193 60.6
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 2.0e-56 223.0 200 62.0
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 2.6e-56 222.6 177 63.3
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 7.6e-56 221.1 201 55.2
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 1.3e-55 220.3 189 60.3
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 3.8e-55 218.8 197 60.9
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 8.4e-55 217.6 197 60.4
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 1.1e-54 217.2 191 59.2
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 2.5e-54 216.1 189 60.3
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 2.5e-54 216.1 209 55.5
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 2.5e-54 216.1 197 59.4
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 3.2e-54 215.7 192 60.4
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 5.5e-54 214.9 202 54.0
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 5.5e-54 214.9 193 58.0
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 5.5e-54 214.9 188 59.0
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 7.2e-54 214.5 194 58.2
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 7.2e-54 214.5 196 59.2
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 7.2e-54 214.5 188 59.0
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 9.3e-54 214.2 191 58.1
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 1.6e-53 213.4 201 54.2
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 2.1e-53 213.0 196 54.1
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 2.7e-53 212.6 194 57.7
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 2.7e-53 212.6 192 59.4
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 2.7e-53 212.6 188 58.5
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 4.6e-53 211.8 198 56.1
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 6.1e-53 211.5 199 56.8
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 1.3e-52 210.3 196 57.7
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 2.3e-52 209.5 196 54.1
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 3.0e-52 209.1 202 55.9
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 8.7e-52 207.6 201 55.2
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 1.5e-51 206.8 193 57.0
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 1.5e-51 206.8 195 53.8
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 1.9e-51 206.5 193 57.5
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 2.5e-51 206.1 196 54.1
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 3.3e-51 205.7 196 54.1
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 7.4e-51 204.5 201 56.2
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 7.4e-51 204.5 192 55.2
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 2.2e-50 203.0 196 55.1
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 1.1e-49 200.7 196 53.6
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 1.1e-49 200.7 196 53.6
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 1.4e-49 200.3 195 51.3
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 1.8e-49 199.9 198 52.5
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 1.8e-49 199.9 198 55.1
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 1.2e-48 197.2 194 51.0
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 2.0e-48 196.4 192 53.6
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 2.6e-48 196.1 191 49.7
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 2.6e-48 196.1 189 54.5
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 5.9e-48 194.9 196 52.0
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 2.9e-47 192.6 157 63.1
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 6.5e-47 191.4 188 52.7
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 6.5e-47 191.4 195 52.3
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 1.2e-45 187.2 203 53.2
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 2.7e-45 186.0 127 70.1
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 3.6e-45 185.7 190 52.1
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 7.9e-45 184.5 188 50.5
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 1.0e-44 184.1 193 50.8
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 1.0e-44 184.1 193 50.8
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 1.8e-44 183.3 195 50.8
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 1.8e-44 183.3 215 47.9
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 2.3e-44 183.0 215 47.4
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 5.1e-44 181.8 198 51.5
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 8.8e-44 181.0 136 64.0
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 2.5e-43 179.5 198 51.0
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 2.5e-43 179.5 196 49.5
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 1.3e-42 177.2 197 47.7
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 3.7e-42 175.6 192 49.0
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 4.5e-40 168.7 191 47.6
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 1.6e-37 160.2 188 47.9
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 2.1e-37 159.8 216 44.9
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 1.4e-33 147.1 194 45.4
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 3.1e-33 146.0 196 43.9
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 2.0e-32 143.3 196 42.3
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 4.5e-32 142.1 196 42.9
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 4.5e-32 142.1 196 42.9
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 1.0e-31 141.0 190 46.3
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 1.3e-31 140.6 112 65.2
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 8.5e-31 137.9 199 42.7
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 2.5e-30 136.3 119 60.5
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.4e-28 130.6 84 75.0
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 9.7e-27 124.4 199 37.7
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 1.3e-26 124.0 194 40.2
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 1.7e-26 123.6 199 38.2
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 4.1e-25 119.0 196 41.8
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 5.0e-23 112.1 201 40.8
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 2.5e-22 109.8 187 39.6
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 9.4e-22 107.8 176 39.2
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 2.7e-21 106.3 185 34.1
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 6.8e-20 101.7 183 35.0
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 2.0e-19 100.1 95 56.8
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 2.0e-16 90.1 182 35.7
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 5.5e-14 82.0 98 41.8
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 2.7e-13 79.7 86 48.8
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 7.5e-11 71.6 140 32.1
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 1.3e-10 70.9 66 54.5
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 2.8e-10 69.7 60 60.0
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 2.8e-10 69.7 65 60.0
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 3.7e-10 69.3 50 62.0
Sopen01g040360 Solanum pennellii HOM05D004800 ORTHO05D005842 1.4e-09 67.4 60 56.7
Sopen07g026310 Solanum pennellii HOM05D004800 ORTHO05D005842 1.4e-09 67.4 60 56.7
Sopen07g029020 Solanum pennellii HOM05D004800 ORTHO05D005842 1.4e-09 67.4 60 56.7
MCO11G643 Micromonas commoda HOM05D004800 ORTHO05D005842 3.1e-09 66.2 114 35.1
arahy.Tifrunner.gnm1.ann1.Y76JQK Arachis hypogaea HOM05D004800 ORTHO05D005842 5.4e-09 65.5 188 31.9
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 4.5e-08 62.4 122 36.1
TPR.G31499 Trifolium pratense HOM05D000201 ORTHO05D016113 8.6e-07 58.2 50 56.0
Cfa024124 Carpinus fangiana HOM05D004800 ORTHO05D005842 5.6e-06 55.5 128 31.2


User provided reference genes

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