Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 2.2e-99 365.5 175 100.0
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 4.0e-93 344.7 175 92.0
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 5.3e-93 344.4 175 92.6
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 1.2e-92 343.2 175 93.1
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 2.0e-92 342.4 175 92.0
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 2.6e-92 342.0 175 92.6
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 3.4e-92 341.7 175 92.6
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 4.5e-92 341.3 175 92.0
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 4.5e-92 341.3 174 93.1
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 5.8e-92 340.9 175 92.0
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 1.0e-91 340.1 174 92.5
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 1.3e-91 339.7 175 91.4
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 2.2e-91 339.0 175 91.4
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 2.2e-91 339.0 172 91.9
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 2.2e-91 339.0 172 93.0
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 3.8e-91 338.2 174 92.0
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 5.0e-91 337.8 175 90.9
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 5.0e-91 337.8 175 92.0
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 5.0e-91 337.8 175 91.4
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 5.0e-91 337.8 174 92.5
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 6.5e-91 337.4 175 92.6
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 6.5e-91 337.4 175 90.3
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 6.5e-91 337.4 175 90.9
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 1.1e-90 336.7 175 92.0
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 2.5e-90 335.5 175 90.9
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 2.5e-90 335.5 175 90.9
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 3.2e-90 335.1 175 90.9
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 3.2e-90 335.1 174 90.2
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 3.2e-90 335.1 172 91.9
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 4.2e-90 334.7 175 90.3
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 4.2e-90 334.7 175 90.9
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 5.5e-90 334.3 175 89.1
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 7.1e-90 334.0 172 91.3
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 7.1e-90 334.0 172 91.9
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 9.3e-90 333.6 172 91.9
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.2e-89 333.2 175 90.9
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 3.5e-89 331.6 173 90.8
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 7.9e-89 330.5 174 90.2
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 7.9e-89 330.5 174 90.2
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 3.0e-88 328.6 175 89.1
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 3.9e-88 328.2 174 90.2
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 5.1e-88 327.8 174 89.7
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 5.1e-88 327.8 172 89.0
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 6.7e-88 327.4 173 88.4
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 6.7e-88 327.4 172 89.5
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 6.7e-88 327.4 175 89.1
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 2.5e-87 325.5 174 89.7
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 3.3e-87 325.1 172 90.7
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 4.3e-87 324.7 172 90.1
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 5.7e-87 324.3 173 86.7
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 5.7e-87 324.3 174 87.9
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 7.4e-87 323.9 173 86.7
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 9.7e-87 323.6 172 87.2
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 1.6e-86 322.8 173 86.1
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 2.2e-86 322.4 174 89.1
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 2.8e-86 322.0 173 88.4
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 2.8e-86 322.0 172 86.6
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 3.7e-86 321.6 172 86.0
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 4.8e-86 321.2 173 86.1
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 4.8e-86 321.2 175 86.9
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 6.3e-86 320.9 175 85.7
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 6.3e-86 320.9 173 86.7
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 8.2e-86 320.5 174 87.4
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 8.2e-86 320.5 172 86.0
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 1.1e-85 320.1 175 85.1
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 1.1e-85 320.1 174 86.8
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 1.4e-85 319.7 175 86.9
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 1.8e-85 319.3 172 87.8
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 2.4e-85 318.9 173 85.0
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 2.4e-85 318.9 173 85.0
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 3.1e-85 318.5 172 87.2
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 3.1e-85 318.5 175 84.6
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 3.1e-85 318.5 171 85.4
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 4.1e-85 318.2 175 86.9
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 4.1e-85 318.2 175 84.6
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 9.0e-85 317.0 172 84.9
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 9.0e-85 317.0 172 84.9
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 1.2e-84 316.6 172 87.8
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 1.5e-84 316.2 171 87.1
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 1.5e-84 316.2 172 86.6
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 2.0e-84 315.8 172 84.3
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 2.6e-84 315.5 172 85.5
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 1.7e-83 312.8 175 84.6
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 1.7e-83 312.8 226 71.2
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 1.9e-82 309.3 190 78.9
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 1.9e-82 309.3 173 83.2
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 1.9e-82 309.3 172 83.7
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 1.9e-82 309.3 172 83.7
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 1.9e-82 309.3 172 83.7
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 1.9e-82 309.3 172 83.7
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 2.5e-82 308.9 175 85.7
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 9.4e-82 307.0 181 84.5
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 2.7e-81 305.4 172 83.1
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 6.1e-81 304.3 171 82.5
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.4e-80 303.1 171 81.9
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 6.7e-80 300.8 165 84.8
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 2.0e-79 299.3 173 81.5
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 5.7e-79 297.7 159 88.1
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 2.8e-78 295.4 158 90.5
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 7.4e-71 270.8 149 87.2
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 1.3e-70 270.0 174 71.3
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 6.3e-70 267.7 151 85.4
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 2.4e-69 265.8 138 92.0
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 2.4e-69 265.8 174 67.2
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 4.1e-69 265.0 146 85.6
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 1.2e-68 263.5 176 71.6
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 2.9e-67 258.8 174 67.2
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 9.4e-66 253.8 128 93.8
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 4.7e-65 251.5 147 83.0
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 1.1e-63 246.9 182 68.7
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 3.3e-63 245.4 127 89.8
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 9.7e-63 243.8 126 90.5
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 1.8e-61 239.6 176 64.8
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 4.1e-61 238.4 133 85.0
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 1.6e-60 236.5 172 69.8
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 3.5e-60 235.3 134 85.1
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 5.9e-60 234.6 130 85.4
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 2.9e-59 232.3 130 85.4
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 2.9e-59 232.3 130 85.4
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 5.0e-59 231.5 127 84.3
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 1.5e-58 229.9 129 84.5
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 3.2e-58 228.8 127 83.5
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.0e-56 221.9 163 69.9
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 5.4e-53 211.5 147 73.5
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 8.0e-49 197.6 132 72.7
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 1.5e-47 193.4 128 74.2
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 7.0e-45 184.5 131 72.5
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 1.2e-44 183.7 130 68.5
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 5.6e-42 174.9 92 91.3
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.4e-39 165.6 91 87.9
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 4.4e-39 165.2 96 83.3
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.8e-37 159.8 92 84.8
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.1e-37 158.7 95 83.2
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 7.0e-37 157.9 104 75.0
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 7.0e-37 157.9 90 86.7
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.6e-36 156.8 95 80.0
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.0e-35 154.1 80 88.8
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 1.5e-34 150.2 88 80.7
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 4.3e-34 148.7 93 75.3
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 1.3e-30 137.1 75 86.7
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.4e-29 133.7 77 84.4
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 7.0e-29 131.3 99 64.6
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.0e-27 127.5 80 76.2
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 6.6e-27 124.8 192 36.5
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 3.1e-24 115.9 67 76.1
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 9.2e-21 104.4 89 59.6
Cc06_g07800 Coffea canephora HOM05D005237 ORTHO05D006189 1.9e-18 96.7 57 78.9
Lsat_1_v5_gn_2_45981 Lactuca sativa HOM05D005237 ORTHO05D003224 4.6e-12 75.5 37 83.8


User provided reference genes

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