Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 2.2e-249 865.1 423 100.0
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 2.3e-150 536.2 425 61.6
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 3.9e-150 535.4 425 62.6
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 1.3e-148 530.4 422 60.9
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 3.7e-148 528.9 424 60.6
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 1.1e-147 527.3 420 60.0
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 1.4e-144 516.9 426 59.6
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 3.0e-142 509.2 417 61.4
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 2.5e-141 506.1 426 58.7
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 3.3e-141 505.8 426 59.4
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 5.7e-141 505.0 402 60.9
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 2.2e-140 503.1 425 60.7
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 2.4e-139 499.6 422 57.6
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 9.0e-139 497.7 426 56.6
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.2e-138 497.3 422 57.6
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 5.9e-138 495.0 422 57.3
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 2.2e-137 493.0 425 57.6
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 2.2e-137 493.0 405 59.0
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 5.0e-137 491.9 405 59.5
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 6.5e-137 491.5 425 57.9
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 1.4e-136 490.3 422 57.1
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 1.9e-136 490.0 405 59.3
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 2.1e-135 486.5 405 59.0
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 7.9e-135 484.6 405 58.5
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 2.2e-132 476.5 424 57.1
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 1.4e-131 473.8 399 59.4
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 1.8e-131 473.4 426 56.1
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 5.3e-131 471.9 425 55.1
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 1.5e-130 470.3 423 54.6
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 2.6e-130 469.5 383 61.6
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 7.7e-130 468.0 425 54.8
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 1.3e-129 467.2 404 56.2
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 2.6e-125 453.0 427 55.5
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 1.7e-124 450.3 406 55.7
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 1.7e-124 450.3 425 55.1
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 2.2e-124 449.9 405 53.6
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 1.8e-123 446.8 396 56.1
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 5.3e-123 445.3 409 53.3
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.6e-122 443.0 421 52.5
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 1.7e-121 440.3 396 54.5
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 2.9e-121 439.5 429 54.8
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 1.4e-120 437.2 392 54.1
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 2.5e-120 436.4 392 54.1
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 3.2e-120 436.0 401 54.6
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 4.2e-120 435.6 392 55.9
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 1.2e-119 434.1 392 53.8
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 1.6e-119 433.7 404 54.0
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 2.1e-119 433.3 398 54.8
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 2.1e-119 433.3 382 54.5
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 2.7e-119 433.0 427 51.3
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 2.3e-118 429.9 404 54.5
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 2.3e-118 429.9 424 51.7
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 8.8e-118 427.9 415 52.0
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 1.5e-117 427.2 401 52.6
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 4.4e-117 425.6 427 49.2
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 5.7e-117 425.2 432 53.5
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 9.7e-117 424.5 400 53.2
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 2.2e-116 423.3 393 53.9
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.8e-116 422.2 388 55.2
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 2.4e-115 419.9 390 52.8
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 7.7e-114 414.8 416 51.9
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 2.2e-113 413.3 369 55.6
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 8.5e-113 411.4 395 54.7
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 1.1e-112 411.0 424 49.1
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 1.5e-112 410.6 404 50.5
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 1.9e-112 410.2 436 49.3
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 4.2e-112 409.1 402 51.5
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 5.5e-112 408.7 387 54.3
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 1.8e-110 403.7 400 52.5
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 1.8e-110 403.7 426 49.8
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 5.2e-110 402.1 431 49.9
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 1.2e-109 401.0 426 49.8
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 3.3e-109 399.4 429 49.7
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 3.3e-109 399.4 405 50.1
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 4.4e-109 399.1 429 50.3
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 1.3e-108 397.5 387 53.7
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 2.2e-108 396.7 388 53.6
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 1.1e-107 394.4 424 49.1
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 1.4e-107 394.0 394 52.0
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 9.1e-107 391.3 387 52.7
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 1.2e-106 391.0 425 49.6
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 1.2e-106 391.0 424 48.6
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 1.6e-106 390.6 400 52.0
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 3.5e-106 389.4 384 53.6
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 7.7e-106 388.3 400 52.2
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 7.7e-106 388.3 377 53.3
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 1.7e-105 387.1 387 52.7
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 2.9e-105 386.3 387 52.5
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 3.8e-105 386.0 387 53.2
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 1.1e-104 384.4 426 49.3
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 1.9e-104 383.6 378 53.4
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 1.9e-104 383.6 426 49.3
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 2.5e-104 383.3 387 52.2
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 2.7e-103 379.8 402 49.8
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 1.5e-101 374.0 424 49.1
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 2.0e-101 373.6 379 49.6
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 2.0e-98 363.6 407 49.1
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 1.0e-94 351.3 394 47.5
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 7.5e-93 345.1 391 46.5
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 2.8e-92 343.2 287 60.3
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 1.2e-87 327.8 300 56.3
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.6e-82 309.3 326 50.6
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 5.4e-75 285.8 253 56.9
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 6.6e-73 278.9 208 64.9
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 2.1e-71 273.9 272 52.2
Atru.chr7.2387 Acer truncatum HOM05D002238 ORTHO05D007272 3.6e-71 273.1 174 74.7
ECA233G3411 Erigeron canadensis HOM05D002238 ORTHO05D007272 3.6e-71 273.1 237 54.0
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 4.0e-70 269.6 274 48.9
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 1.5e-69 267.7 336 44.3
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 7.5e-69 265.4 409 40.3
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.2e-68 263.8 272 52.6
Zm00001eb090760 Zea mays HOM05D002238 ORTHO05D007272 3.5e-66 256.5 322 44.4
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 4.6e-66 256.1 294 46.9
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 1.4e-62 244.6 193 60.1
Os11g0207300 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D007272 1.4e-62 244.6 316 43.0
Nitab4.5_0004440g0040 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.8e-54 217.6 169 61.5
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 3.4e-53 213.4 396 32.8
BcaNung07110 Brassica carinata HOM05D002238 ORTHO05D007272 4.9e-52 209.5 178 59.0
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 6.4e-52 209.1 195 52.3
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 4.2e-43 179.9 253 41.5
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 2.3e-41 174.1 230 45.2
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 6.7e-41 172.6 197 49.2
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.3e-40 169.9 137 62.0
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 4.8e-39 166.4 395 30.1
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.2e-37 161.8 323 32.8
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 3.4e-37 160.2 383 30.0
A06p36210 Brassica napus HOM05D002238 ORTHO05D007272 1.4e-35 154.8 179 50.3
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.2e-34 151.8 279 35.1
MD15G1118500 Malus domestica HOM05D002238 ORTHO05D007272 3.0e-33 147.1 126 57.1
BcaB07g29994 Brassica carinata HOM05D002238 ORTHO05D007272 5.1e-33 146.4 178 47.8
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.9e-27 127.9 111 58.6
Nitab4.5_0002007g0110 Nicotiana tabacum HOM05D002238 ORTHO05D007272 6.1e-26 122.9 112 56.2
Atru.chr7.2385 Acer truncatum HOM05D002238 ORTHO05D026268 2.0e-21 107.8 98 50.0
Nitab4.5_0011728g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.9e-20 104.0 116 43.1
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.8e-20 103.6 98 54.1
Nitab4.5_0012587g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.2e-19 100.1 116 41.4
Nitab4.5_0002007g0100 Nicotiana tabacum HOM05D002238 ORTHO05D007272 9.4e-11 72.4 88 39.8
Medtr3g118420 Medicago truncatula HOM05D002238 ORTHO05D026268 4.7e-10 70.1 103 39.8
Sabra18G0031600 Salix brachista HOM05D002238 ORTHO05D026268 1.7e-07 61.6 65 47.7
Peaxi162Scf00015g02018 Petunia axillaris HOM05D002238 ORTHO05D026268 1.8e-06 58.2 63 41.3
Nitab4.5_0011591g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 9.1e-06 55.8 48 52.1


User provided reference genes

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