Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI32G0918 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 5.2e-134 481.1 251 100.0
TWI34G1090 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 3.9e-97 358.6 228 82.9
Dinv41380 Davidia involucrata HOM05D005809 ORTHO05D007259 1.4e-83 313.5 226 72.6
Dinv43244 Davidia involucrata HOM05D005809 ORTHO05D007259 3.9e-81 305.4 226 70.8
QL02p093215 Quercus lobata HOM05D005809 ORTHO05D007259 5.1e-81 305.1 228 72.8
GSVIVG01023603001 Vitis vinifera HOM05D005809 ORTHO05D007259 6.7e-81 304.7 226 70.4
Sabra06G0140200 Salix brachista HOM05D005809 ORTHO05D007259 5.6e-80 301.6 227 70.0
Potri.006G184600 Populus trichocarpa HOM05D005809 ORTHO05D007259 1.6e-79 300.1 226 69.5
Ciclev10009378m.g Citrus clementina HOM05D005809 ORTHO05D007259 3.1e-78 295.8 226 69.0
MELO3C004136.2 Cucumis melo HOM05D005809 ORTHO05D007259 4.0e-78 295.4 226 69.9
CiPaw.15G168900 Carya illinoinensis HOM05D005809 ORTHO05D007259 5.3e-78 295.0 226 67.3
Manes.06G033951 Manihot esculenta HOM05D005809 ORTHO05D007259 9.0e-78 294.3 226 69.5
CsaV3_2G007490 Cucumis sativus L. HOM05D005809 ORTHO05D007259 1.2e-77 293.9 226 70.4
Eucgr.C02542 Eucalyptus grandis HOM05D005809 ORTHO05D007259 1.2e-77 293.9 227 68.7
Thecc.09G030800 Theobroma cacao HOM05D005809 ORTHO05D007259 5.8e-77 291.6 226 68.1
Gohir.D05G056000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 7.6e-77 291.2 226 68.1
Eucgr.C02492 Eucalyptus grandis HOM05D005809 ORTHO05D007259 1.0e-76 290.8 227 68.3
Gorai.009G057000 Gossypium raimondii HOM05D005809 ORTHO05D007259 2.9e-76 289.3 226 67.7
Lalb_Chr23g0275681 Lupinus albus HOM05D005809 ORTHO05D007259 2.9e-76 289.3 226 68.1
COL.COLO4_18808 Corchorus olitorius HOM05D005809 ORTHO05D007259 6.5e-76 288.1 226 66.4
Duzib187G1947 Durio zibethinus HOM05D005809 ORTHO05D007259 1.9e-75 286.6 228 66.2
Nn8g39891 Nelumbo nucifera HOM05D005809 ORTHO05D007259 1.9e-75 286.6 226 66.8
Prupe.7G262800 Prunus persica HOM05D005809 ORTHO05D007259 2.5e-75 286.2 226 67.7
CANSAT11G2656 Cannabis sativa HOM05D005809 ORTHO05D007259 5.5e-75 285.0 229 68.6
Hma1.2p1_0222F.1_g093550 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 5.5e-75 285.0 226 66.8
Atru.chr7.51 Acer truncatum HOM05D005809 ORTHO05D007259 1.3e-73 280.4 226 64.6
Glyma.06G219200 Glycine max HOM05D005809 ORTHO05D007259 1.3e-73 280.4 226 67.3
CSS0045900 Camellia sinensis var. sinensis HOM05D005809 ORTHO05D007259 3.0e-73 279.3 226 65.5
Sed0001225 Sechium edule HOM05D005809 ORTHO05D007259 3.0e-73 279.3 226 65.5
MD02G1007700 Malus domestica HOM05D005809 ORTHO05D007259 3.9e-73 278.9 226 65.5
arahy.Tifrunner.gnm1.ann1.Z5GGTZ Arachis hypogaea HOM05D005809 ORTHO05D007259 6.7e-73 278.1 243 62.6
CARHR271730 Cardamine hirsuta HOM05D005809 ORTHO05D007259 1.9e-72 276.6 228 64.0
arahy.Tifrunner.gnm1.ann1.46B1EJ Arachis hypogaea HOM05D005809 ORTHO05D007259 5.7e-72 275.0 248 61.3
Phvul.009G195100 Phaseolus vulgaris HOM05D005809 ORTHO05D007259 1.3e-71 273.9 226 66.8
Ca_03733_v3 Cicer arietinum L. HOM05D005809 ORTHO05D007259 1.6e-71 273.5 228 65.8
Duzib168G0271 Durio zibethinus HOM05D005809 ORTHO05D007259 1.6e-71 273.5 229 65.5
Lj6g0016819 Lotus japonicus HOM05D005809 ORTHO05D007259 2.8e-71 272.7 226 64.2
TAR636G3217 Trochodendron aralioides HOM05D005809 ORTHO05D007259 6.2e-71 271.6 227 65.2
AL8G34030 Arabidopsis lyrata HOM05D005809 ORTHO05D007259 1.1e-70 270.8 226 63.7
TPR.G20735 Trifolium pratense HOM05D005809 ORTHO05D007259 1.4e-70 270.4 228 66.2
Medtr2g460780 Medicago truncatula HOM05D005809 ORTHO05D007259 5.3e-70 268.5 227 65.2
Migut.J01341 Erythranthe guttata HOM05D005809 ORTHO05D007259 1.2e-69 267.3 226 61.9
AT5G57950 Arabidopsis thaliana HOM05D005809 ORTHO05D007259 3.4e-69 265.8 226 61.9
MSTRG.19648 Avicennia marina HOM05D005809 ORTHO05D007259 5.8e-69 265.0 226 63.3
Glyma.06G219400 Glycine max HOM05D005809 ORTHO05D007259 5.8e-69 265.0 226 65.0
SalBow1G5910 Salvia bowleyana HOM05D005809 ORTHO05D007259 5.8e-69 265.0 226 63.3
Carub.0008s1848 Capsella rubella HOM05D005809 ORTHO05D007259 1.0e-68 264.2 226 60.2
RcHm_v2.0_Chr2g0085671 Rosa chinensis HOM05D005809 ORTHO05D007259 1.0e-68 264.2 226 64.2
Solyc07g005640.3 Solanum lycopersicum HOM05D005809 ORTHO05D007259 2.9e-68 262.7 228 62.7
Sp6g19620 Schrenkiella parvula HOM05D005809 ORTHO05D007259 3.8e-68 262.3 226 60.6
Sopen07g001740 Solanum pennellii HOM05D005809 ORTHO05D007259 3.8e-68 262.3 228 62.3
ClCG02G014530 Citrullus lanatus HOM05D005809 ORTHO05D007259 5.0e-68 261.9 214 66.8
Haze_19206 Corylus avellana HOM05D005809 ORTHO05D007259 5.0e-68 261.9 265 57.7
FvH4_1g00940 Fragaria vesca HOM05D005809 ORTHO05D007259 2.5e-67 259.6 235 61.3
BraA10t43609Z Brassica rapa HOM05D005809 ORTHO05D007259 3.2e-67 259.2 226 61.5
Sc08g0005640 Simmondsia chinensis HOM05D005809 ORTHO05D007259 3.2e-67 259.2 226 60.6
PGR102G1797 Punica granatum HOM05D005809 ORTHO05D007259 5.5e-67 258.5 226 63.3
Aa31LG3G13770 Aethionema arabicum HOM05D000853 ORTHO05D000723 1.6e-66 256.9 225 60.4
FAN23G2666 Fragaria x ananassa HOM05D005809 ORTHO05D007259 2.1e-66 256.5 229 62.9
PGSC0003DMG401011139 Solanum tuberosum HOM05D005809 ORTHO05D007259 2.1e-66 256.5 229 60.7
Thhalv10014592m.g Eutrema salsugineum HOM05D005809 ORTHO05D007259 4.6e-66 255.4 226 61.5
THA.LOC104817821 Tarenaya hassleriana HOM05D005809 ORTHO05D007259 1.8e-65 253.4 227 60.4
HanXRQChr17g0552351 Helianthus annuus HOM05D005809 ORTHO05D007259 5.1e-65 251.9 228 59.6
Aqoxy2G02328 Aquilegia oxysepala HOM05D005809 ORTHO05D007259 6.7e-65 251.5 226 61.1
Psat1g021800 Pisum sativum HOM05D005809 ORTHO05D007259 6.7e-65 251.5 226 61.9
Oeu052197.1 Olea europaea HOM05D005809 ORTHO05D007259 8.7e-65 251.1 226 59.7
A10p16200 Brassica napus HOM05D005809 ORTHO05D007259 1.1e-64 250.8 226 61.5
ECA247G0266 Erigeron canadensis HOM05D005809 ORTHO05D007259 1.1e-64 250.8 234 59.8
Cpa.g.sc46.154 Carica papaya HOM05D005809 ORTHO05D007259 1.9e-64 250.0 232 59.9
Ah.02g128190 Amaranthus hybridus HOM05D005809 ORTHO05D007259 3.3e-64 249.2 226 61.1
Rhsim01G0033400 Rhododendron simsii HOM05D005809 ORTHO05D007259 5.7e-64 248.4 238 58.8
vmacro16802 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 1.8e-62 243.4 284 51.4
CAN.G160.58 Capsicum annuum HOM05D005809 ORTHO05D007259 6.9e-62 241.5 237 57.4
Peaxi162Scf00401g00082 Petunia axillaris HOM05D005809 ORTHO05D007259 1.2e-61 240.7 239 55.2
C09p49790 Brassica napus HOM05D005809 ORTHO05D007259 2.0e-61 240.0 226 61.1
BolC9t57830H Brassica oleracea HOM05D005809 ORTHO05D007259 4.5e-61 238.8 226 60.6
Lsat_1_v5_gn_8_63301 Lactuca sativa HOM05D005809 ORTHO05D007259 1.7e-60 236.9 245 52.7
SGA_v2.0_scaffold265G46107 Striga asiatica HOM05D005809 ORTHO05D007259 1.7e-60 236.9 226 56.6
Gohir.A05G055000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 2.9e-60 236.1 226 60.6
ATR0739G206 Amborella trichopoda HOM05D005809 ORTHO05D007259 3.8e-60 235.7 233 55.8
PSO782G1751 Papaver somniferum HOM05D005809 ORTHO05D007259 5.0e-60 235.3 226 54.4
PSO063G2086 Papaver somniferum HOM05D005809 ORTHO05D007259 1.2e-58 230.7 226 53.1
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 2.1e-58 229.9 226 54.4
Nitab4.5_0005653g0040 Nicotiana tabacum HOM05D005809 ORTHO05D007259 1.4e-57 227.3 226 57.5
Nitab4.5_0001571g0010 Nicotiana tabacum HOM05D005809 ORTHO05D007259 3.9e-57 225.7 232 56.0
Actinidia04301 Actinidia chinensis HOM05D005809 ORTHO05D007259 2.5e-56 223.0 226 56.2
DCAR_017909 Daucus carota HOM05D005809 ORTHO05D007259 9.1e-54 214.5 255 51.8
HPP92_016019 Vanilla planifolia HOM05D005809 ORTHO05D007259 2.0e-53 213.4 226 53.5
Pp3c8_2960 Physcomitrium patens HOM05D005809 ORTHO05D007259 6.5e-52 208.4 227 49.8
SEGI_31268 Sequoiadendron giganteum HOM05D005809 ORTHO05D007259 1.4e-51 207.2 233 51.5
Zm00001eb312980 Zea mays HOM05D005809 ORTHO05D007259 2.1e-50 203.4 226 49.1
Os09g0420600 Oryza sativa ssp. japonica HOM05D005809 ORTHO05D007259 2.7e-50 203.0 226 49.6
FAN28G0834 Fragaria x ananassa HOM05D005809 ORTHO05D007259 6.1e-50 201.8 243 51.4
Dinv42856 Davidia involucrata HOM05D005809 ORTHO05D007259 1.4e-49 200.7 158 69.0
Hund01517 Selenicereus undatus HOM05D005809 ORTHO05D007259 1.8e-49 200.3 226 51.3
SMO361G0248 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 8.8e-49 198.0 232 47.8
Actinidia38322 Actinidia chinensis HOM05D005809 ORTHO05D007259 1.1e-48 197.6 166 65.1
HPP92_016035 Vanilla planifolia HOM05D005809 ORTHO05D007259 1.1e-48 197.6 207 53.6
CDE12G0564 Ceratophyllum demersum HOM05D005809 ORTHO05D007259 2.0e-48 196.8 252 47.2
SMO361G0343 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 2.0e-48 196.8 232 47.4
SHI02853 Sapria himalayana HOM05D005809 ORTHO05D007259 3.7e-47 192.6 220 49.5
AagrBONN_evm.TU.Sc2ySwM_117.3948 Anthoceros agrestis HOM05D005809 ORTHO05D007259 1.1e-46 191.0 228 47.4
Mapoly0003s0072 Marchantia polymorpha HOM05D005809 ORTHO05D007259 1.4e-46 190.7 232 46.6
Pp3c16_13530 Physcomitrium patens HOM05D005809 ORTHO05D007259 1.8e-46 190.3 215 47.9
vmacro05441 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 2.4e-46 189.9 209 52.6
Sed0002126 Sechium edule HOM05D005809 ORTHO05D007259 9.1e-46 188.0 162 62.3
Lj9C717G7 Lonicera japonica HOM05D005809 ORTHO05D007259 3.5e-45 186.0 226 48.7
Hma1.2p1_0010F.1_g006710 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 8.0e-42 174.9 166 60.2
AUR62035200 Chenopodium quinoa HOM05D005809 ORTHO05D007259 1.4e-41 174.1 226 46.9
CBR_g38078 Chara braunii HOM05D000019 ORTHO05D000048 9.1e-30 134.8 263 33.1
Cc06_g14980 Coffea canephora HOM05D005809 ORTHO05D007259 1.7e-28 130.6 101 65.3
Cc06_g14990 Coffea canephora HOM05D005809 ORTHO05D007259 2.9e-28 129.8 103 65.0
Aa31LG1G19310 Aethionema arabicum HOM05D005809 ORTHO05D007259 2.3e-25 120.2 95 65.3
MCO13G469 Micromonas commoda HOM05D005809 ORTHO05D007259 1.3e-23 114.4 220 35.0
FAN21G3780 Fragaria x ananassa HOM05D005809 ORTHO05D007259 2.8e-23 113.2 196 39.3
EL10As1g23143 Beta vulgaris HOM05D005809 ORTHO05D007259 2.0e-21 107.1 117 53.0
Cre04.g226950 Chlamydomonas reinhardtii HOM05D005809 ORTHO05D007259 4.5e-21 105.9 268 29.5
RcHm_v2.0_Chr5g0031291 Rosa chinensis HOM05D005809 ORTHO05D007259 5.9e-21 105.5 141 48.2
Hma1.2p1_0222F.1_g093570 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 1.3e-20 104.4 73 71.2
PRCOL_00000214 Prasinoderma coloniale HOM05D005809 ORTHO05D007259 5.0e-20 102.4 199 35.2
FAN25G0559 Fragaria x ananassa HOM05D005809 ORTHO05D007259 8.6e-20 101.7 109 55.0
EL10As1g23140 Beta vulgaris HOM05D005809 ORTHO05D007259 8.0e-18 95.1 63 69.8
Oeu049715.1 Olea europaea HOM05D005809 ORTHO05D007259 3.0e-17 93.2 85 58.8
Oeu007777.1 Olea europaea HOM05D005809 ORTHO05D007259 1.5e-16 90.9 97 53.6
Oeu038698.1 Olea europaea HOM05D005809 ORTHO05D007259 7.5e-16 88.6 97 51.5
FvH4_3g18530 Fragaria vesca HOM05D005809 ORTHO05D007259 6.4e-15 85.5 170 37.1
FAN11G2737 Fragaria x ananassa HOM05D005809 ORTHO05D007259 6.4e-15 85.5 170 37.1
Oeu017561.1 Olea europaea HOM05D005809 ORTHO05D007259 6.4e-15 85.5 97 51.5
MD09G1175000 Malus domestica HOM05D005809 ORTHO05D007259 4.1e-14 82.8 92 57.6
FAN26G2229 Fragaria x ananassa HOM05D005809 ORTHO05D007259 1.3e-12 77.8 70 58.6
Oeu029241.1 Olea europaea HOM05D005809 ORTHO05D007259 3.0e-12 76.6 83 50.6
CSS0015204 Camellia sinensis var. sinensis HOM05D000853 ORTHO05D000723 4.0e-09 66.2 76 51.3
vmacro11582 Vaccinium macrocarpon HOM05D005809 ORTHO05D010075 1.3e-07 61.2 56 60.7


User provided reference genes

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