Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 4.7e-261 904.0 477 100.0
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.1e-201 706.8 481 80.7
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 2.2e-189 666.0 477 71.1
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 2.6e-187 659.1 477 70.9
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 1.7e-186 656.4 477 70.6
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 8.5e-186 654.1 477 70.4
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.9e-185 652.9 477 70.6
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 2.7e-184 649.0 486 69.8
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 2.4e-180 636.0 477 68.6
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 7.7e-179 630.9 484 68.4
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.0e-175 620.5 486 66.0
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 4.0e-175 618.6 485 68.5
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 1.7e-170 603.2 487 67.4
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 8.5e-170 600.9 484 63.4
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 5.5e-169 598.2 485 68.2
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 1.2e-168 597.0 489 64.4
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 4.7e-168 595.1 490 63.9
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 1.0e-167 594.0 460 67.0
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 6.8e-167 591.3 486 65.4
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 9.8e-166 587.4 487 62.2
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 9.8e-166 587.4 485 63.1
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 3.7e-165 585.5 492 63.2
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 3.1e-164 582.4 495 63.6
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 5.4e-164 581.6 460 65.0
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 5.0e-162 575.1 485 61.4
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 8.6e-162 574.3 489 64.2
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 1.1e-161 573.9 486 64.2
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.9e-161 573.2 488 62.5
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 1.9e-161 573.2 484 61.8
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 3.3e-161 572.4 459 66.9
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 5.6e-161 571.6 490 62.9
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 1.2e-160 570.5 492 62.0
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 2.8e-160 569.3 490 62.0
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 3.0e-159 565.8 505 60.2
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 1.3e-157 560.5 484 61.2
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 2.2e-157 559.7 487 61.2
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 2.4e-156 556.2 501 60.5
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 5.4e-156 555.1 484 60.5
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 3.0e-154 549.3 484 60.1
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 3.0e-154 549.3 486 59.9
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 3.9e-154 548.9 490 59.0
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 5.0e-154 548.5 489 58.1
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.3e-153 545.8 484 58.9
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 3.3e-153 545.8 484 61.6
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 7.3e-153 544.7 488 60.0
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 4.7e-152 542.0 484 58.5
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 8.0e-152 541.2 416 66.3
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 4.0e-151 538.9 498 60.2
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 8.9e-151 537.7 486 58.6
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.5e-150 537.0 498 60.0
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 2.0e-150 536.6 493 58.6
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 2.6e-150 536.2 499 58.1
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.4e-150 535.4 476 58.8
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 7.5e-150 534.6 494 58.1
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 7.5e-150 534.6 485 62.9
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 1.3e-149 533.9 494 57.9
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 1.3e-149 533.9 484 58.5
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 1.7e-149 533.5 499 58.5
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 2.2e-149 533.1 457 63.5
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 8.3e-149 531.2 470 58.7
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.9e-148 530.0 507 56.0
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 2.4e-148 529.6 486 61.3
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 3.2e-148 529.3 487 60.2
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 4.1e-148 528.9 492 57.5
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 5.4e-148 528.5 484 57.2
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 5.4e-148 528.5 515 55.3
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 9.2e-148 527.7 511 57.7
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 1.2e-147 527.3 487 57.7
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 3.3e-145 519.2 486 59.9
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 4.3e-145 518.8 486 56.6
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 5.6e-145 518.5 488 59.4
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 4.7e-144 515.4 484 56.0
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 1.4e-143 513.8 497 57.5
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 1.2e-142 510.8 485 59.2
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.4e-142 509.2 462 58.0
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.7e-141 506.9 489 57.5
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 4.1e-140 502.3 495 57.8
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.7e-139 499.6 492 55.7
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 6.0e-139 498.4 464 56.2
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 7.8e-139 498.0 473 59.0
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 7.8e-139 498.0 402 64.4
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 7.8e-139 498.0 443 61.6
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 3.9e-138 495.7 480 55.6
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 3.9e-138 495.7 500 55.2
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 5.1e-138 495.4 517 54.9
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 1.1e-137 494.2 466 57.5
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 1.9e-137 493.4 485 55.3
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 4.3e-137 492.3 493 56.8
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 5.6e-137 491.9 493 56.8
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 9.5e-137 491.1 491 54.2
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 1.2e-136 490.7 488 52.9
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 3.6e-136 489.2 489 54.8
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 1.1e-135 487.6 492 55.5
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 1.4e-135 487.3 433 58.0
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.8e-135 486.9 507 55.2
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 8.9e-135 484.6 584 48.1
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 8.9e-135 484.6 489 55.8
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 7.6e-134 481.5 485 56.7
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 1.3e-133 480.7 484 55.4
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 1.7e-133 480.3 477 54.9
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 4.9e-133 478.8 485 54.4
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 6.4e-133 478.4 486 54.9
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 8.4e-133 478.0 486 53.9
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 8.4e-133 478.0 486 54.3
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 1.4e-132 477.2 487 56.5
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 2.4e-132 476.5 544 52.9
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 7.1e-132 474.9 506 53.2
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 9.2e-132 474.6 486 53.7
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 2.7e-131 473.0 486 53.9
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 7.8e-131 471.5 487 53.6
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 3.0e-130 469.5 491 51.3
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 6.6e-130 468.4 485 53.2
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 6.6e-130 468.4 490 53.5
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.4e-127 459.9 532 49.6
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.1e-127 459.5 532 49.6
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 5.2e-127 458.8 426 59.2
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 5.8e-126 455.3 484 55.0
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 9.9e-126 454.5 444 54.7
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 4.9e-125 452.2 453 56.7
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 1.2e-123 447.6 485 53.4
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 2.3e-122 443.4 390 59.0
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 2.8e-120 436.4 457 51.9
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.8e-119 433.7 463 54.2
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 6.9e-119 431.8 484 49.8
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 7.1e-116 421.8 467 52.2
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 7.1e-116 421.8 406 53.4
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 5.8e-110 402.1 479 48.4
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 2.1e-107 393.7 444 48.6
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 2.7e-107 393.3 484 48.3
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 2.3e-106 390.2 500 48.6
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 4.9e-101 372.5 456 49.6
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 4.3e-97 359.4 396 53.3
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 9.0e-95 351.7 489 46.6
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 5.9e-94 349.0 216 75.0
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 5.5e-92 342.4 216 74.5
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 4.6e-91 339.3 428 47.4
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 1.8e-90 337.4 450 41.8
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 1.8e-87 327.4 322 50.9
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 9.1e-87 325.1 407 47.9
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 4.5e-86 322.8 484 45.0
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 5.9e-86 322.4 370 47.3
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 5.0e-85 319.3 319 49.5
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 5.5e-84 315.8 442 43.9
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 4.4e-81 306.2 311 50.2
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 9.1e-79 298.5 222 62.2
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 5.9e-78 295.8 348 52.0
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 4.5e-70 269.6 176 73.3
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 5.5e-60 236.1 306 50.3
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.2e-54 218.4 156 70.5
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.8e-50 204.5 135 69.6
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 1.9e-44 184.5 216 53.7
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 1.0e-42 178.7 346 32.4
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 3.9e-37 160.2 256 32.0
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 2.1e-35 154.5 268 39.6
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 9.8e-33 145.6 228 45.6
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 4.9e-32 143.3 190 37.4
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 5.4e-31 139.8 94 68.1
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 1.8e-26 124.8 76 72.4
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 4.1e-23 113.6 91 59.3
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 1.4e-18 98.6 60 71.7
Cfa026408 Carpinus fangiana HOM05D004208 ORTHO05D121639 4.9e-16 90.1 306 22.9
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 3.3e-12 77.4 118 43.2
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 6.2e-11 73.2 43 76.7
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 1.8e-10 71.6 114 41.2
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 1.2e-09 68.9 74 48.6
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 2.2e-08 64.7 73 46.6
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 8.4e-08 62.8 109 31.2


User provided reference genes

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