Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 9.5e-45 183.0 82 100.0
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 2.7e-39 164.9 81 88.9
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 4.6e-39 164.1 81 88.9
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 1.0e-38 162.9 81 87.7
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 1.7e-38 162.2 80 86.2
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 1.7e-38 162.2 80 88.8
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 2.3e-38 161.8 81 87.7
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 3.0e-38 161.4 80 86.2
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 6.6e-38 160.2 81 87.7
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 6.6e-38 160.2 79 88.6
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 8.7e-38 159.8 81 85.2
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 1.1e-37 159.5 81 87.7
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.9e-37 158.7 79 84.8
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.9e-37 158.7 79 84.8
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 1.9e-37 158.7 81 84.0
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 1.9e-37 158.7 81 87.7
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 1.9e-37 158.7 82 82.9
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 2.5e-37 158.3 79 87.3
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 2.5e-37 158.3 82 84.1
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 4.3e-37 157.5 79 86.1
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 5.6e-37 157.1 78 85.9
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 5.6e-37 157.1 80 82.5
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 5.6e-37 157.1 79 86.1
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 7.3e-37 156.8 81 82.7
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 9.6e-37 156.4 80 82.5
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 9.6e-37 156.4 79 84.8
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 9.6e-37 156.4 79 84.8
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 1.3e-36 156.0 81 85.2
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 1.3e-36 156.0 79 86.1
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 1.6e-36 155.6 80 83.8
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 1.6e-36 155.6 80 83.8
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 2.1e-36 155.2 79 83.5
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 2.8e-36 154.8 81 84.0
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 4.8e-36 154.1 79 83.5
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 4.8e-36 154.1 80 83.8
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 6.2e-36 153.7 81 84.0
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 6.2e-36 153.7 80 82.5
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 6.2e-36 153.7 80 82.5
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 8.1e-36 153.3 79 82.3
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 8.1e-36 153.3 79 83.5
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 1.4e-35 152.5 77 83.1
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 1.4e-35 152.5 80 81.2
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 1.8e-35 152.1 80 81.2
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 1.8e-35 152.1 80 81.2
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 3.1e-35 151.4 77 81.8
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 3.1e-35 151.4 76 86.8
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 4.0e-35 151.0 75 84.0
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 4.0e-35 151.0 81 81.5
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 5.3e-35 150.6 81 82.7
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 5.3e-35 150.6 78 80.8
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 9.0e-35 149.8 79 81.0
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 1.5e-34 149.1 81 79.0
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 3.4e-34 147.9 81 81.5
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 3.4e-34 147.9 77 83.1
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 7.6e-34 146.7 82 76.8
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 7.6e-34 146.7 79 79.7
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 9.9e-34 146.4 81 77.8
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 1.3e-33 146.0 78 78.2
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 2.9e-33 144.8 78 76.9
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 3.8e-33 144.4 80 76.2
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 3.8e-33 144.4 81 76.5
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 6.4e-33 143.7 79 78.5
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 6.4e-33 143.7 79 78.5
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 8.4e-33 143.3 79 78.5
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 8.4e-33 143.3 82 78.0
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 1.1e-32 142.9 78 78.2
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 1.4e-32 142.5 80 75.0
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 1.4e-32 142.5 79 77.2
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 2.4e-32 141.7 80 76.2
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 5.4e-32 140.6 80 75.0
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 5.4e-32 140.6 81 74.1
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 7.1e-32 140.2 79 75.9
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 1.2e-31 139.4 77 75.3
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 2.1e-31 138.7 77 76.6
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 1.0e-30 136.3 84 72.6
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 3.0e-30 134.8 76 73.7
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 3.3e-29 131.3 84 70.2
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 2.4e-27 125.2 127 49.6
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 2.6e-26 121.7 132 48.5
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 1.6e-23 112.5 70 72.9
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 1.1e-19 99.8 76 59.2
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 3.1e-19 98.2 188 33.5
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 3.8e-17 91.3 42 90.5
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 8.4e-17 90.1 43 86.0
Sc09g0007050 Simmondsia chinensis HOM05D007710 ORTHO05D004022 3.5e-15 84.7 41 90.2
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 6.0e-15 84.0 41 85.4
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 1.3e-14 82.8 42 78.6
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 1.3e-14 82.8 41 80.5
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 2.1e-12 75.5 39 79.5
QL09p021214 Quercus lobata HOM05D007710 ORTHO05D004022 1.1e-11 73.2 38 81.6
MSTRG.6 Avicennia marina HOM05D007710 ORTHO05D004022 5.3e-11 70.9 41 73.2
Dinv29135 Davidia involucrata HOM05D007710 ORTHO05D004022 3.4e-10 68.2 32 90.6
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 3.4e-10 68.2 40 67.5
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 2.9e-09 65.1 79 40.5
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 3.8e-09 64.7 79 41.8
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 5.0e-09 64.3 79 40.5
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 8.4e-09 63.5 81 37.0
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 1.1e-08 63.2 79 38.0
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 1.1e-08 63.2 79 39.2
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 1.1e-08 63.2 79 39.2
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 1.1e-08 63.2 79 39.2
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 1.1e-08 63.2 79 39.2
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 1.4e-08 62.8 79 39.2
SalBow2G2426 Salvia bowleyana HOM05D007710 ORTHO05D004022 1.4e-08 62.8 39 66.7
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 1.9e-08 62.4 79 38.0
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 1.9e-08 62.4 81 39.5
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 1.9e-08 62.4 81 39.5
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 1.9e-08 62.4 79 39.2
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 2.5e-08 62.0 79 38.0
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 3.2e-08 61.6 79 36.7
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 3.2e-08 61.6 82 37.8
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 3.2e-08 61.6 79 38.0
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 3.2e-08 61.6 79 39.2
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 4.2e-08 61.2 79 36.7
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 4.2e-08 61.2 79 38.0
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 5.5e-08 60.8 82 36.6
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 5.5e-08 60.8 79 36.7
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 5.5e-08 60.8 79 38.0
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 7.1e-08 60.5 79 36.7
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 7.1e-08 60.5 79 36.7
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 7.1e-08 60.5 79 38.0
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 7.1e-08 60.5 77 37.7
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 7.1e-08 60.5 79 38.0
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 7.1e-08 60.5 79 36.7
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 9.3e-08 60.1 79 38.0
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 9.3e-08 60.1 79 38.0
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 9.3e-08 60.1 79 38.0
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 9.3e-08 60.1 79 36.7
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 9.3e-08 60.1 79 38.0
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 9.3e-08 60.1 79 38.0
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 1.2e-07 59.7 79 38.0
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 1.2e-07 59.7 79 38.0
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.2e-07 59.7 79 38.0
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.2e-07 59.7 79 38.0
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.2e-07 59.7 79 38.0
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 1.2e-07 59.7 79 38.0
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 1.2e-07 59.7 79 36.7
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 1.2e-07 59.7 79 36.7
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 1.2e-07 59.7 79 36.7
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 1.2e-07 59.7 83 37.3
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 1.6e-07 59.3 77 36.4
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 1.6e-07 59.3 79 35.4
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 1.6e-07 59.3 79 38.0
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 1.6e-07 59.3 77 37.7
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 1.6e-07 59.3 79 36.7
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 2.1e-07 58.9 79 36.7
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 2.1e-07 58.9 79 36.7
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 2.1e-07 58.9 79 36.7
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 2.1e-07 58.9 83 37.3
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 2.1e-07 58.9 83 36.1
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 2.1e-07 58.9 83 37.3
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 2.7e-07 58.5 79 36.7
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 3.5e-07 58.2 79 35.4
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 3.5e-07 58.2 87 34.5
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 3.5e-07 58.2 79 36.7
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 6.1e-07 57.4 79 35.4
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 6.1e-07 57.4 79 35.4
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 6.1e-07 57.4 82 32.9
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 7.9e-07 57.0 98 36.7
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 7.9e-07 57.0 79 36.7
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 1.0e-06 56.6 79 35.4
CDE06G1656 Ceratophyllum demersum HOM05D007646 ORTHO05D004022 1.0e-06 56.6 83 36.1
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 1.3e-06 56.2 77 36.4
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 1.3e-06 56.2 79 34.2
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 1.8e-06 55.8 83 34.9
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 3.0e-06 55.1 101 31.7
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 3.9e-06 54.7 79 35.4
EL10Ac2g04503 Beta vulgaris HOM05D007646 ORTHO05D004022 6.7e-06 53.9 79 32.9


User provided reference genes

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