Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 3.1e-190 668.3 344 100.0
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 6.8e-185 650.6 344 96.5
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 1.5e-160 569.7 345 84.3
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 1.3e-159 566.6 345 84.9
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 1.7e-159 566.2 345 83.2
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 4.1e-158 561.6 345 84.1
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 5.4e-158 561.2 345 83.5
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 3.5e-157 558.5 344 83.1
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 4.6e-157 558.1 345 83.8
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 2.3e-156 555.8 347 83.6
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 5.1e-156 554.7 345 82.9
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 1.1e-155 553.5 345 83.8
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 1.5e-155 553.1 345 81.7
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.9e-155 552.7 345 81.7
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 4.3e-155 551.6 345 81.7
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.6e-154 549.7 345 80.9
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 2.1e-154 549.3 344 81.1
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 2.1e-154 549.3 344 81.1
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 6.2e-154 547.7 345 81.7
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 6.2e-154 547.7 345 80.6
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 1.4e-153 546.6 345 81.7
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 2.0e-152 542.7 345 81.7
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 9.9e-152 540.4 346 80.9
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 1.1e-150 537.0 345 80.3
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 2.4e-150 535.8 349 78.2
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 5.4e-150 534.6 343 78.4
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 1.2e-149 533.5 345 81.2
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 4.6e-149 531.6 345 80.9
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 4.6e-149 531.6 348 79.3
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 7.8e-149 530.8 337 82.2
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 1.0e-148 530.4 343 79.6
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 1.3e-148 530.0 346 78.6
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 1.7e-148 529.6 343 78.4
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 1.7e-148 529.6 338 79.0
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 1.7e-148 529.6 346 78.3
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 3.9e-148 528.5 342 79.2
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 1.1e-147 526.9 346 78.0
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 2.5e-147 525.8 343 78.4
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 5.6e-147 524.6 345 79.4
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 5.6e-147 524.6 343 77.6
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 7.3e-147 524.2 346 79.2
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 1.6e-146 523.1 343 77.8
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 1.6e-146 523.1 345 79.1
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 2.1e-146 522.7 343 77.8
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 3.6e-146 521.9 343 77.6
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 1.1e-145 520.4 343 76.7
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.1e-145 520.4 345 79.1
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 1.1e-145 520.4 342 78.1
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 5.3e-145 518.1 337 77.7
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 9.0e-145 517.3 343 77.3
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 9.0e-145 517.3 345 77.7
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 9.0e-145 517.3 344 76.5
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 1.2e-144 516.9 343 77.0
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 1.2e-144 516.9 343 77.0
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 2.0e-144 516.2 343 77.0
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 2.0e-144 516.2 345 77.4
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 2.6e-144 515.8 343 77.0
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 3.4e-144 515.4 343 76.7
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 3.4e-144 515.4 343 76.7
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 3.4e-144 515.4 343 76.7
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 4.4e-144 515.0 344 74.4
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 9.9e-144 513.8 343 75.2
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 1.7e-143 513.1 355 74.9
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 8.4e-143 510.8 345 76.2
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 8.4e-143 510.8 345 76.2
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 1.4e-142 510.0 345 76.2
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 1.4e-142 510.0 351 74.9
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 3.2e-142 508.8 345 75.4
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 9.3e-142 507.3 345 76.5
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 9.3e-142 507.3 345 74.5
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 4.6e-141 505.0 345 74.8
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 6.0e-141 504.6 336 73.5
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 7.9e-141 504.2 343 76.1
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 3.9e-140 501.9 355 73.5
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 6.6e-140 501.1 367 73.6
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 1.9e-139 499.6 343 75.8
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 3.3e-139 498.8 358 72.9
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 4.3e-139 498.4 415 67.7
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 4.3e-139 498.4 392 68.9
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 5.6e-139 498.0 347 74.6
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 1.3e-138 496.9 345 73.9
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 1.3e-138 496.9 345 75.7
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 3.6e-138 495.4 340 77.4
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 1.4e-137 493.4 325 76.3
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 4.0e-137 491.9 347 74.4
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 7.6e-136 487.6 340 75.9
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 2.2e-135 486.1 272 90.1
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 2.4e-134 482.6 313 80.2
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.2e-133 480.3 308 80.8
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 2.1e-133 479.6 310 76.8
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 2.7e-133 479.2 344 73.5
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 1.8e-132 476.5 345 73.9
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 3.0e-132 475.7 336 75.0
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 2.5e-131 472.6 336 70.5
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 2.2e-127 459.5 344 68.9
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 2.9e-127 459.1 272 82.7
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 1.9e-126 456.4 308 75.3
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 9.3e-126 454.1 345 70.7
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 3.7e-122 442.2 345 68.4
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 2.6e-120 436.0 400 61.8
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 1.0e-119 434.1 343 67.1
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 5.1e-116 421.8 345 64.9
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 1.9e-115 419.9 295 76.3
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 5.7e-115 418.3 418 58.4
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 3.7e-114 415.6 345 64.6
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 1.4e-113 413.7 329 68.4
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 1.7e-111 406.8 292 74.7
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 4.2e-110 402.1 222 87.8
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 3.6e-101 372.5 343 60.3
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 1.4e-100 370.5 222 82.4
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 2.2e-98 363.2 384 52.9
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 6.3e-98 361.7 345 59.7
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 3.1e-97 359.4 248 75.4
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 7.2e-94 348.2 204 84.3
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 2.6e-83 313.2 395 51.9
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 5.9e-80 302.0 344 52.0
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 1.3e-79 300.8 340 48.8
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 2.3e-76 290.0 169 84.6
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 2.0e-75 287.0 248 59.7
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 3.4e-75 286.2 249 63.1
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 3.5e-72 276.2 200 71.0
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 3.0e-68 263.1 255 56.5
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 2.0e-67 260.4 273 48.4
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 1.4e-57 227.6 144 73.6
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 3.2e-57 226.5 144 81.9
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 7.3e-54 215.3 236 55.5
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 3.1e-52 209.9 165 67.9
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 2.0e-51 207.2 192 56.8
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 4.3e-46 189.5 110 86.4
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 1.2e-45 188.0 184 59.8
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 2.1e-45 187.2 131 72.5
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 1.8e-44 184.1 341 36.7
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 2.1e-40 170.6 323 33.7
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 2.7e-40 170.2 332 33.7
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 3.3e-38 163.3 313 33.9
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 1.1e-33 148.3 132 63.6
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 1.6e-29 134.4 113 63.7
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 5.3e-28 129.4 74 85.1
Gohir.D07G021800 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.1e-24 117.5 95 67.4
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 7.4e-22 109.0 106 63.2
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 2.8e-21 107.1 95 65.3
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 2.8e-21 107.1 73 69.9
MD01G1007700 Malus domestica HOM05D005314 ORTHO05D246798 7.4e-06 55.8 31 83.9


User provided reference genes

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