Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 0.0e+00 1129.4 565 100.0
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 2.5e-224 782.3 550 70.9
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 1.8e-222 776.2 564 69.1
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 2.3e-222 775.8 568 69.0
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 5.9e-218 761.1 551 69.5
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 1.0e-217 760.4 540 70.2
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 7.9e-215 750.7 536 69.2
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 1.0e-214 750.4 564 67.4
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 1.3e-214 750.0 532 70.3
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 1.8e-214 749.6 536 69.0
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 8.7e-214 747.3 536 70.1
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.5e-213 746.5 536 68.7
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.5e-213 746.5 548 69.2
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 4.3e-213 745.0 564 68.1
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 2.4e-211 739.2 530 70.2
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 1.2e-210 736.9 524 70.2
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 3.4e-210 735.3 550 66.7
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 3.8e-209 731.9 552 67.8
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 1.4e-208 729.9 555 67.0
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 1.2e-207 726.9 531 68.0
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 1.2e-207 726.9 554 65.7
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 2.7e-207 725.7 550 66.0
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 5.1e-206 721.5 517 69.1
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 2.6e-205 719.2 536 67.9
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 9.7e-205 717.2 578 63.1
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.3e-204 716.8 570 64.4
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 2.2e-204 716.1 540 67.2
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 4.8e-204 714.9 501 70.7
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 1.1e-203 713.8 476 73.3
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 2.4e-203 712.6 567 64.2
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 4.1e-203 711.8 530 67.0
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 2.6e-202 709.1 531 66.5
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 2.6e-202 709.1 530 66.4
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 1.0e-201 707.2 543 65.6
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 1.0e-201 707.2 515 67.4
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 1.7e-201 706.4 515 67.2
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 2.2e-201 706.1 510 67.3
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 8.5e-201 704.1 531 65.7
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 1.9e-200 703.0 559 63.9
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 9.4e-200 700.7 533 65.3
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 9.4e-200 700.7 543 65.4
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 1.2e-199 700.3 552 63.6
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 1.8e-198 696.4 485 70.1
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 2.3e-198 696.0 539 65.9
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 3.9e-198 695.3 565 63.5
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 5.2e-198 694.9 548 63.9
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 2.6e-197 692.6 490 68.4
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 3.3e-197 692.2 501 68.3
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 9.7e-197 690.6 545 64.6
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 4.1e-195 685.3 554 63.7
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 5.3e-195 684.9 536 63.6
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 4.5e-194 681.8 487 67.1
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 2.9e-193 679.1 531 63.5
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 3.8e-193 678.7 610 58.2
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 1.5e-192 676.8 503 66.6
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 4.2e-192 675.2 542 63.8
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 9.4e-192 674.1 502 66.7
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 9.4e-192 674.1 542 62.5
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 9.4e-192 674.1 546 62.8
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 1.2e-191 673.7 503 65.0
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 6.1e-191 671.4 523 63.9
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 5.2e-190 668.3 536 62.5
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 3.3e-189 665.6 495 66.3
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 9.7e-189 664.1 522 63.0
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 3.7e-188 662.1 562 60.1
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 3.1e-187 659.1 499 66.3
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 4.1e-187 658.7 488 67.4
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 9.4e-184 647.5 476 67.0
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 1.4e-182 643.7 615 55.3
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 1.2e-181 640.6 487 63.2
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 3.4e-181 639.0 486 64.6
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 7.5e-181 637.9 497 66.0
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 6.3e-180 634.8 495 64.0
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 8.3e-180 634.4 548 57.3
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 4.1e-179 632.1 522 63.2
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 5.4e-179 631.7 509 64.8
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 7.0e-179 631.3 420 72.4
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 2.9e-177 625.9 535 58.7
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 5.5e-176 621.7 489 64.0
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 4.0e-174 615.5 545 59.8
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 2.2e-172 609.8 513 57.7
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 5.9e-170 601.7 541 59.5
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.3e-169 600.5 521 56.8
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 2.3e-169 599.7 494 61.5
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 2.9e-169 599.4 511 59.9
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 3.3e-168 595.9 494 59.3
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 4.7e-167 592.0 530 55.8
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 9.8e-165 584.3 501 59.3
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 1.4e-163 580.5 516 56.4
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 7.0e-163 578.2 490 59.4
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 9.2e-163 577.8 523 58.3
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.2e-162 577.4 526 55.5
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.6e-162 577.0 504 57.5
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 1.0e-161 574.3 499 57.1
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 6.6e-161 571.6 502 57.2
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 2.3e-158 563.1 449 63.7
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 3.1e-158 562.8 490 57.3
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.1e-155 554.3 408 69.1
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.7e-153 547.0 452 59.7
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 9.5e-152 541.2 497 54.5
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 1.8e-150 537.0 455 62.2
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 1.8e-150 537.0 498 55.0
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 8.9e-150 534.6 488 57.0
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 3.4e-149 532.7 533 55.0
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 1.7e-148 530.4 523 55.4
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 3.7e-148 529.3 513 54.0
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 1.8e-142 510.4 455 53.8
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 2.2e-140 503.4 500 50.2
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 4.1e-139 499.2 490 52.7
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 9.2e-139 498.0 489 54.0
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 2.3e-137 493.4 527 48.2
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 4.3e-136 489.2 493 52.3
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 1.1e-134 484.6 509 48.5
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 2.9e-132 476.5 396 59.6
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 1.6e-130 470.7 395 57.7
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 5.1e-129 465.7 330 69.4
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 1.7e-124 450.7 325 67.7
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 3.2e-123 446.4 344 65.4
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 1.8e-121 440.7 398 60.1
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 7.4e-120 435.3 462 50.0
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 9.9e-117 424.9 288 72.2
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 2.7e-114 416.8 332 63.6
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 4.6e-114 416.0 341 63.0
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 3.7e-111 406.4 332 59.9
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 6.9e-110 402.1 414 52.4
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 2.2e-108 397.1 322 64.3
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 1.9e-107 394.0 643 37.5
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.9e-107 394.0 346 55.2
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 1.3e-105 387.9 475 47.6
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 4.8e-87 326.2 227 63.9
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 8.2e-87 325.5 454 42.5
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 4.2e-83 313.2 218 63.3
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.0e-81 308.5 278 53.2
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.0e-76 292.0 348 45.1
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 1.7e-76 291.2 615 33.2
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 9.1e-70 268.9 209 64.6
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 4.5e-69 266.5 209 64.1
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 8.5e-68 262.3 181 69.6
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 1.6e-66 258.1 190 67.4
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 3.6e-66 256.9 161 76.4
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 8.8e-65 252.3 275 50.2
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 4.4e-64 250.0 199 62.8
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 7.5e-64 249.2 477 34.6
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 2.4e-62 244.2 149 77.2
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 8.3e-55 219.2 198 53.0
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 4.5e-53 213.4 162 63.0
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 7.8e-53 212.6 162 64.2
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.2e-47 194.5 147 63.3
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 1.6e-45 188.3 189 55.6
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 9.5e-43 179.1 130 66.2
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.0e-40 171.4 118 67.8
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 7.0e-38 162.9 173 43.4
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 7.8e-37 159.5 148 56.8
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.5e-35 154.5 200 40.5
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 3.3e-35 154.1 143 58.7
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.6e-34 151.8 108 66.7
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 5.2e-25 120.2 76 73.7
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.6e-21 107.1 120 42.5
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 5.1e-20 103.6 67 73.1
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 3.9e-12 77.4 73 53.4
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 6.6e-12 76.6 73 53.4
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 3.3e-11 74.3 63 57.1


User provided reference genes

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