Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI32G0141 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 1.3e-54 216.1 103 100.0
TWI34G0293 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 7.8e-52 206.8 103 93.2
Ciclev10009999m.g Citrus clementina HOM05D007008 ORTHO05D008622 3.6e-49 198.0 103 88.3
Rhsim02G0211800 Rhododendron simsii HOM05D007008 ORTHO05D008622 1.4e-48 196.1 103 87.4
Thecc.09G014400 Theobroma cacao HOM05D007008 ORTHO05D008622 2.3e-48 195.3 103 87.4
CiPaw.08G005100 Carya illinoinensis HOM05D007008 ORTHO05D008622 3.1e-48 194.9 103 87.4
Nn2g14020 Nelumbo nucifera HOM05D007008 ORTHO05D008622 1.2e-47 193.0 101 89.1
CANSAT25G2981 Cannabis sativa HOM05D007008 ORTHO05D008622 1.5e-47 192.6 103 86.4
RcHm_v2.0_Chr6g0299291 Rosa chinensis HOM05D007008 ORTHO05D008622 2.0e-47 192.2 103 85.4
Gohir.D06G104200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 3.4e-47 191.4 103 84.5
Manes.03G007600 Manihot esculenta HOM05D007008 ORTHO05D008622 5.8e-47 190.7 103 86.4
Gohir.A06G102300 Gossypium hirsutum HOM05D007008 ORTHO05D008622 7.5e-47 190.3 103 84.5
FvH4_2g41220 Fragaria vesca HOM05D007008 ORTHO05D008622 9.8e-47 189.9 103 84.5
FAN15G2831 Fragaria x ananassa HOM05D000756 ORTHO05D008622 9.8e-47 189.9 103 84.5
FAN27G1693 Fragaria x ananassa HOM05D007008 ORTHO05D008622 9.8e-47 189.9 103 84.5
QL02p018585 Quercus lobata HOM05D007008 ORTHO05D008622 9.8e-47 189.9 102 85.3
Duzib187G1435 Durio zibethinus HOM05D007008 ORTHO05D008622 1.7e-46 189.1 103 83.5
Eucgr.C04041 Eucalyptus grandis HOM05D007008 ORTHO05D008622 1.7e-46 189.1 103 82.5
Manes.16G130900 Manihot esculenta HOM05D007008 ORTHO05D008622 1.7e-46 189.1 103 85.4
Prupe.1G395400 Prunus persica HOM05D007008 ORTHO05D008622 1.7e-46 189.1 103 84.5
MSTRG.13965 Avicennia marina HOM05D007008 ORTHO05D008622 2.2e-46 188.7 103 84.5
Nn8g40044 Nelumbo nucifera HOM05D007008 ORTHO05D008622 2.9e-46 188.3 101 86.1
CAN.G906.10 Capsicum annuum HOM05D007008 ORTHO05D008622 3.7e-46 188.0 101 86.1
Duzib168G0569 Durio zibethinus HOM05D007008 ORTHO05D008622 3.7e-46 188.0 103 83.5
Atru.chr7.2552 Acer truncatum HOM05D007008 ORTHO05D008622 4.9e-46 187.6 103 84.5
Duzib150G0558 Durio zibethinus HOM05D007008 ORTHO05D008622 6.4e-46 187.2 103 82.5
Solyc08g006700.3 Solanum lycopersicum HOM05D007008 ORTHO05D008622 6.4e-46 187.2 102 84.3
PGSC0003DMG400026283 Solanum tuberosum HOM05D007008 ORTHO05D008622 6.4e-46 187.2 102 84.3
THA.LOC104824959 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 6.4e-46 187.2 100 83.0
MD15G1042200 Malus domestica HOM05D007008 ORTHO05D008622 8.3e-46 186.8 103 83.5
THA.LOC104799029 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 1.9e-45 185.7 100 84.0
MD08G1054800 Malus domestica HOM05D007008 ORTHO05D008622 2.4e-45 185.3 103 82.5
CDE05G1515 Ceratophyllum demersum HOM05D007008 ORTHO05D008622 4.1e-45 184.5 99 84.8
Sed0013935 Sechium edule HOM05D007008 ORTHO05D008622 4.1e-45 184.5 102 82.4
Migut.A00362 Erythranthe guttata HOM05D007008 ORTHO05D008622 5.4e-45 184.1 103 81.6
Potri.018G017300 Populus trichocarpa HOM05D007008 ORTHO05D008622 5.4e-45 184.1 103 83.5
Gohir.A07G033600 Gossypium hirsutum HOM05D007008 ORTHO05D008622 7.0e-45 183.7 103 84.5
Gohir.D07G037200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 7.0e-45 183.7 103 84.5
Gorai.001G038800 Gossypium raimondii HOM05D007008 ORTHO05D008622 7.0e-45 183.7 103 84.5
Phvul.001G040900 Phaseolus vulgaris HOM05D007008 ORTHO05D008622 7.0e-45 183.7 103 83.5
MSTRG.11785 Avicennia marina HOM05D007008 ORTHO05D008622 9.2e-45 183.3 103 82.5
Glyma.17G224100 Glycine max HOM05D007008 ORTHO05D008622 1.6e-44 182.6 103 82.5
TAR626G0196 Trochodendron aralioides HOM05D007008 ORTHO05D008622 1.6e-44 182.6 100 85.0
Glyma.14G101000 Glycine max HOM05D007008 ORTHO05D008622 2.0e-44 182.2 103 83.5
Rhsim02G0210500 Rhododendron simsii HOM05D007008 ORTHO05D008622 2.0e-44 182.2 112 77.7
Glyma.06G060700 Glycine max HOM05D007008 ORTHO05D008622 2.7e-44 181.8 103 82.5
Potri.006G265600 Populus trichocarpa HOM05D007008 ORTHO05D008622 2.7e-44 181.8 103 83.5
Sabra18G0020700 Salix brachista HOM05D007008 ORTHO05D008622 4.6e-44 181.0 107 82.2
SGA_v2.0_scaffold4G02166 Striga asiatica HOM05D007008 ORTHO05D008622 4.6e-44 181.0 103 80.6
Eucgr.L00629 Eucalyptus grandis HOM05D007008 ORTHO05D008622 6.0e-44 180.6 114 75.4
Lj5g0019856 Lotus japonicus HOM05D007008 ORTHO05D008622 6.0e-44 180.6 101 83.2
Sabra06G0208200 Salix brachista HOM05D007008 ORTHO05D008622 6.0e-44 180.6 102 82.4
Lalb_Chr22g0361631 Lupinus albus HOM05D007008 ORTHO05D008622 1.7e-43 179.1 101 81.2
SGA_v2.0_scaffold169G38605 Striga asiatica HOM05D007008 ORTHO05D008622 1.7e-43 179.1 102 79.4
Sed0015687 Sechium edule HOM05D007008 ORTHO05D008622 2.3e-43 178.7 102 79.4
Zm00001eb184500 Zea mays HOM05D007008 ORTHO05D008622 2.3e-43 178.7 101 81.2
Aqoxy7G03348 Aquilegia oxysepala HOM05D007008 ORTHO05D008622 3.0e-43 178.3 101 78.2
arahy.Tifrunner.gnm1.ann1.ENRJ0V Arachis hypogaea HOM05D007008 ORTHO05D008622 3.0e-43 178.3 102 79.4
AUR62024793 Chenopodium quinoa HOM05D007008 ORTHO05D008622 3.9e-43 177.9 101 80.2
Hund02976 Selenicereus undatus HOM05D007008 ORTHO05D008622 3.9e-43 177.9 99 80.8
AT5G10810 Arabidopsis thaliana HOM05D007008 ORTHO05D008622 6.6e-43 177.2 101 76.2
arahy.Tifrunner.gnm1.ann1.K1H867 Arachis hypogaea HOM05D007008 ORTHO05D008622 6.6e-43 177.2 103 77.7
Carub.0006s0932 Capsella rubella HOM05D007008 ORTHO05D008622 6.6e-43 177.2 100 77.0
Oeu048545.1 Olea europaea HOM05D007008 ORTHO05D008622 6.6e-43 177.2 102 78.4
Oeu006861.2 Olea europaea HOM05D007008 ORTHO05D008622 8.6e-43 176.8 102 78.4
Aa31LG3G16290 Aethionema arabicum HOM05D007008 ORTHO05D008622 1.1e-42 176.4 100 76.0
TAR383G0422 Trochodendron aralioides HOM05D007008 ORTHO05D008622 1.1e-42 176.4 101 79.2
CARHR202480 Cardamine hirsuta HOM05D007008 ORTHO05D008622 2.5e-42 175.3 100 77.0
Thhalv10016011m.g Eutrema salsugineum HOM05D007008 ORTHO05D008622 2.5e-42 175.3 100 77.0
HanXRQChr17g0538991 Helianthus annuus HOM05D007008 ORTHO05D008622 2.5e-42 175.3 103 77.7
AL6G21390 Arabidopsis lyrata HOM05D007008 ORTHO05D008622 3.3e-42 174.9 101 74.3
Glyma.04G060200 Glycine max HOM05D007008 ORTHO05D008622 4.3e-42 174.5 100 81.0
Zm00001eb078360 Zea mays HOM05D007008 ORTHO05D008622 5.6e-42 174.1 101 77.2
EL10Ac2g02486 Beta vulgaris HOM05D007008 ORTHO05D008622 9.5e-42 173.3 103 75.7
A02p00680 Brassica napus HOM05D000653 ORTHO05D002177 9.5e-42 173.3 99 75.8
C02p04680 Brassica napus HOM05D000653 ORTHO05D002177 9.5e-42 173.3 99 75.8
BolC2t06426H Brassica oleracea HOM05D000238 ORTHO05D001043 9.5e-42 173.3 99 75.8
BraA02t05052Z Brassica rapa HOM05D000238 ORTHO05D001043 9.5e-42 173.3 99 75.8
HanXRQChr03g0081451 Helianthus annuus HOM05D007008 ORTHO05D008622 1.2e-41 172.9 102 78.4
Medtr1g014230 Medicago truncatula HOM05D007008 ORTHO05D008622 6.2e-41 170.6 105 78.1
BcaC03g13334 Brassica carinata HOM05D000653 ORTHO05D002177 8.0e-41 170.2 99 74.7
Sopen08g002640 Solanum pennellii HOM05D007008 ORTHO05D008622 8.0e-41 170.2 93 83.9
BcaB08g37301 Brassica carinata HOM05D000238 ORTHO05D008622 1.1e-40 169.9 99 73.7
BcaNung06639 Brassica carinata HOM05D000653 ORTHO05D008622 1.1e-40 169.9 99 73.7
PSO170G4073 Papaver somniferum HOM05D007008 ORTHO05D008622 1.4e-40 169.5 100 77.0
PSO357G0206 Papaver somniferum HOM05D007008 ORTHO05D008622 1.4e-40 169.5 100 77.0
GSVIVG01035984001 Vitis vinifera HOM05D007008 ORTHO05D008622 1.4e-40 169.5 94 81.9
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 1.8e-40 169.1 99 73.7
PGR044G1005 Punica granatum HOM05D007008 ORTHO05D008622 1.8e-40 169.1 103 75.7
ECA240G3080 Erigeron canadensis HOM05D007008 ORTHO05D008622 3.1e-40 168.3 101 79.2
BolC9t59417H Brassica oleracea HOM05D000238 ORTHO05D001043 6.8e-40 167.2 99 72.7
Lsat_1_v5_gn_5_62001 Lactuca sativa HOM05D007008 ORTHO05D008622 1.5e-39 166.0 94 81.9
C09p65940 Brassica napus HOM05D007008 ORTHO05D008622 3.4e-39 164.9 99 70.7
Cc11_g00350 Coffea canephora HOM05D007008 ORTHO05D008622 5.8e-39 164.1 94 79.8
TPR.G38860 Trifolium pratense HOM05D007008 ORTHO05D008622 7.5e-39 163.7 101 73.3
Mapoly0112s0015 Marchantia polymorpha HOM05D007008 ORTHO05D008622 2.9e-38 161.8 102 70.6
SMO367G1120 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 9.2e-37 156.8 100 69.0
AagrBONN_evm.TU.Sc2ySwM_344.3123 Anthoceros agrestis HOM05D007008 ORTHO05D008622 6.6e-35 150.6 101 68.3
CBR_g34568 Chara braunii HOM05D007008 ORTHO05D008622 4.3e-34 147.9 92 68.5
Pp3c15_19100 Physcomitrium patens HOM05D007008 ORTHO05D008622 1.4e-32 142.9 101 61.4
Pp3c9_4080 Physcomitrium patens HOM05D007008 ORTHO05D008622 2.3e-32 142.1 101 61.4
MELO3C030305.2 Cucumis melo HOM05D007008 ORTHO05D008622 1.5e-31 139.4 84 78.6
CiPaw.07G231200 Carya illinoinensis HOM05D007008 ORTHO05D008622 2.0e-31 139.0 71 88.7
Gorai.010G119400 Gossypium raimondii HOM05D007008 ORTHO05D008622 3.4e-31 138.3 74 85.1
CSS0004043 Camellia sinensis var. sinensis HOM05D007008 ORTHO05D008622 7.5e-31 137.1 74 86.5
SMO197G0113 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 1.7e-30 136.0 100 56.0
MCO13G493 Micromonas commoda HOM05D007008 ORTHO05D008622 6.4e-30 134.0 99 51.5
Hund25613 Selenicereus undatus HOM05D007008 ORTHO05D008622 3.2e-29 131.7 74 81.1
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 5.4e-29 131.0 72 81.9
AUR62032427 Chenopodium quinoa HOM05D007008 ORTHO05D008622 1.6e-28 129.4 71 83.1
arahy.Tifrunner.gnm1.ann1.T6XV8N Arachis hypogaea HOM05D007008 ORTHO05D008622 3.5e-28 128.3 82 68.3
Ah.12g060690 Amaranthus hybridus HOM05D007008 ORTHO05D008622 1.7e-27 125.9 71 81.7
Os04g0499200 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 3.0e-27 125.2 76 72.4
PRCOL_00001314 Prasinoderma coloniale HOM05D007008 ORTHO05D008622 3.0e-27 125.2 99 52.5
HPP92_017465 Vanilla planifolia HOM05D007008 ORTHO05D008622 3.0e-27 125.2 75 73.3
Psat6g026400 Pisum sativum HOM05D007008 ORTHO05D008622 3.9e-27 124.8 72 77.8
Sp6g32640 Schrenkiella parvula HOM05D000653 ORTHO05D002177 1.9e-26 122.5 71 77.5
SEGI_13302 Sequoiadendron giganteum HOM05D007008 ORTHO05D008622 5.6e-26 120.9 96 60.4
Thecc.02G190100 Theobroma cacao HOM05D007008 ORTHO05D008622 4.9e-22 107.8 104 55.8
Thecc.02G024500 Theobroma cacao HOM05D007008 ORTHO05D008622 4.6e-20 101.3 64 75.0
Thecc.01G194900 Theobroma cacao HOM05D007008 ORTHO05D008622 8.7e-19 97.1 64 75.0
Os02g0611450 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 4.9e-14 81.3 54 66.7
Thecc.10G152400 Theobroma cacao HOM05D007008 ORTHO05D008622 2.1e-09 65.9 40 77.5
Thecc.05G179000 Theobroma cacao HOM05D000477 ORTHO05D000338 3.6e-09 65.1 42 71.4
CsaV3_2G032520 Cucumis sativus L. HOM05D000653 ORTHO05D002177 1.5e-07 59.7 34 79.4
MBI15_g08395_MAGBIO Magnolia biondii HOM05D007008 ORTHO05D008622 4.5e-07 58.2 34 76.5
arahy.Tifrunner.gnm1.ann1.6H1017 Arachis hypogaea HOM05D007008 ORTHO05D008622 1.3e-06 56.6 31 80.6
A10p26800 Brassica napus HOM05D007008 ORTHO05D008622 2.2e-06 55.8 36 69.4


User provided reference genes

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