Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI32G0122 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 1.1e-73 280.0 161 100.0
Haze_17704 Corylus avellana HOM05D003899 ORTHO05D003655 3.9e-26 122.1 119 51.3
Cfa018365 Carpinus fangiana HOM05D003899 ORTHO05D003655 6.7e-26 121.3 119 49.6
FAN15G3500 Fragaria x ananassa HOM05D003899 ORTHO05D003655 6.7e-26 121.3 84 65.5
FvH4_2g14670 Fragaria vesca HOM05D003899 ORTHO05D003655 8.8e-26 120.9 84 65.5
FAN24G0119 Fragaria x ananassa HOM05D003899 ORTHO05D003655 8.8e-26 120.9 84 65.5
Prupe.8G018800 Prunus persica HOM05D003899 ORTHO05D003655 8.8e-26 120.9 115 50.4
MD05G1014900 Malus domestica HOM05D003899 ORTHO05D003655 1.5e-25 120.2 117 48.7
FAN20G0153 Fragaria x ananassa HOM05D003899 ORTHO05D003655 1.3e-24 117.1 84 63.1
CiPaw.16G017800 Carya illinoinensis HOM05D003899 ORTHO05D003655 1.7e-24 116.7 122 46.7
Dinv24330 Davidia involucrata HOM05D003899 ORTHO05D003655 1.7e-24 116.7 122 50.0
RcHm_v2.0_Chr6g0277141 Rosa chinensis HOM05D003899 ORTHO05D003655 3.7e-24 115.5 86 65.1
Thecc.08G144600 Theobroma cacao HOM05D003899 ORTHO05D003655 6.3e-24 114.8 175 50.9
Actinidia06640 Actinidia chinensis HOM05D003899 ORTHO05D003655 2.4e-23 112.8 117 50.4
A10p07750 Brassica napus HOM05D003899 ORTHO05D003655 1.2e-22 110.5 90 55.6
BolC6t35162H Brassica oleracea HOM05D003899 ORTHO05D003655 1.2e-22 110.5 90 55.6
BraSC36t46027Z Brassica rapa HOM05D003899 ORTHO05D003655 1.2e-22 110.5 90 55.6
BcaB07g33974 Brassica carinata HOM05D003899 ORTHO05D003655 2.0e-22 109.8 89 55.1
Atru.chr4.839 Acer truncatum HOM05D003899 ORTHO05D003655 4.5e-22 108.6 120 47.5
Thhalv10012331m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 4.5e-22 108.6 90 54.4
Gohir.A02G066500 Gossypium hirsutum HOM05D003899 ORTHO05D003655 4.5e-22 108.6 120 50.0
Manes.12G153900 Manihot esculenta HOM05D003899 ORTHO05D003655 5.9e-22 108.2 112 44.6
TWI60G1060 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 2.2e-21 106.3 83 69.9
Duzib041G0166 Durio zibethinus HOM05D003899 ORTHO05D003655 2.9e-21 105.9 176 50.0
Thecc.01G128000 Theobroma cacao HOM05D003899 ORTHO05D003655 2.9e-21 105.9 119 42.9
CANSAT25G0207 Cannabis sativa HOM05D003899 ORTHO05D003655 1.1e-20 104.0 118 44.1
QL02p025320 Quercus lobata HOM05D003899 ORTHO05D003655 4.2e-20 102.1 100 50.0
arahy.Tifrunner.gnm1.ann1.UE47UQ Arachis hypogaea HOM05D003899 ORTHO05D003655 7.2e-20 101.3 115 49.6
QL06p029227 Quercus lobata HOM05D003899 ORTHO05D003655 7.2e-20 101.3 151 49.0
C06p00330 Brassica napus HOM05D003899 ORTHO05D003655 1.2e-19 100.5 90 53.3
Rhsim10G0136200 Rhododendron simsii HOM05D003899 ORTHO05D003655 1.2e-19 100.5 110 47.3
RhsimUnG0132700 Rhododendron simsii HOM05D003899 ORTHO05D003655 1.2e-19 100.5 110 47.3
Gorai.005G081600 Gossypium raimondii HOM05D003899 ORTHO05D003655 1.6e-19 100.1 121 48.8
MSTRG.1375 Avicennia marina HOM05D003899 ORTHO05D003655 2.7e-19 99.4 117 45.3
DCAR_007049 Daucus carota HOM05D003899 ORTHO05D003655 2.7e-19 99.4 88 55.7
PSO017G4320 Papaver somniferum HOM05D003899 ORTHO05D003655 3.6e-19 99.0 122 46.7
Duzib264G1053 Durio zibethinus HOM05D003899 ORTHO05D003655 6.1e-19 98.2 122 41.0
CsaV3_6G030980 Cucumis sativus L. HOM05D003899 ORTHO05D003655 7.9e-19 97.8 99 46.5
Psat6g039960 Pisum sativum HOM05D003899 ORTHO05D003655 1.0e-18 97.4 125 42.4
Medtr1g029140 Medicago truncatula HOM05D003899 ORTHO05D003655 1.4e-18 97.1 123 39.8
Ciclev10003780m.g Citrus clementina HOM05D003899 ORTHO05D003655 1.8e-18 96.7 119 42.0
Nn5g28623 Nelumbo nucifera HOM05D003899 ORTHO05D003655 2.3e-18 96.3 119 44.5
Gohir.A11G224804 Gossypium hirsutum HOM05D003899 ORTHO05D003655 3.0e-18 95.9 84 52.4
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 3.9e-18 95.5 108 47.2
COL.COLO4_08943 Corchorus olitorius HOM05D003899 ORTHO05D003655 3.9e-18 95.5 100 54.0
MELO3C027328.2 Cucumis melo HOM05D003899 ORTHO05D003655 3.9e-18 95.5 98 45.9
CARHR035480 Cardamine hirsuta HOM05D003899 ORTHO05D003655 5.1e-18 95.1 87 51.7
AT1G43790 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 6.7e-18 94.7 90 51.1
CAN.G375.87 Capsicum annuum HOM05D003899 ORTHO05D003655 6.7e-18 94.7 88 54.5
AL1G51910 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 8.8e-18 94.4 90 50.0
THA.LOC104806849 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 8.8e-18 94.4 89 52.8
Ca_12820_v3 Cicer arietinum L. HOM05D003899 ORTHO05D003655 2.0e-17 93.2 121 42.1
Lj1g0026176 Lotus japonicus HOM05D003899 ORTHO05D003655 2.0e-17 93.2 137 43.8
Sp1g32910 Schrenkiella parvula HOM05D003899 ORTHO05D003655 2.6e-17 92.8 77 57.1
Oeu030532.1 Olea europaea HOM05D003899 ORTHO05D003655 4.4e-17 92.0 90 50.0
Potri.007G108100 Populus trichocarpa HOM05D003899 ORTHO05D003655 9.7e-17 90.9 120 43.3
PGR044G0858 Punica granatum HOM05D003899 ORTHO05D003655 9.7e-17 90.9 74 59.5
BcaC08g42822 Brassica carinata HOM05D003899 ORTHO05D003655 1.7e-16 90.1 74 56.8
Potri.005G060700 Populus trichocarpa HOM05D003899 ORTHO05D003655 2.2e-16 89.7 120 41.7
Glyma.14G121800 Glycine max HOM05D003899 ORTHO05D003655 2.8e-16 89.4 128 42.2
Aqoxy5G02188 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 3.7e-16 89.0 87 50.6
ECA246G5022 Erigeron canadensis HOM05D003899 ORTHO05D003655 6.3e-16 88.2 75 57.3
Lsat_1_v5_gn_5_108780 Lactuca sativa HOM05D003899 ORTHO05D003655 6.3e-16 88.2 87 55.2
Sed0026893 Sechium edule HOM05D003899 ORTHO05D003655 8.2e-16 87.8 116 42.2
Gorai.003G068900 Gossypium raimondii HOM05D003899 ORTHO05D003655 1.1e-15 87.4 76 55.3
Lsat_1_v5_gn_9_107661 Lactuca sativa HOM05D003899 ORTHO05D003655 1.1e-15 87.4 87 54.0
Migut.N03236 Erythranthe guttata HOM05D003899 ORTHO05D003655 1.4e-15 87.0 89 50.6
Gohir.D11G228940 Gossypium hirsutum HOM05D003899 ORTHO05D003655 1.4e-15 87.0 76 53.9
PSO170G2020 Papaver somniferum HOM05D003899 ORTHO05D003655 1.4e-15 87.0 123 44.7
AUR62017911 Chenopodium quinoa HOM05D003899 ORTHO05D003655 4.1e-15 85.5 82 51.2
Gohir.D02G072400 Gossypium hirsutum HOM05D003899 ORTHO05D003655 5.3e-15 85.1 123 44.7
Lsat_1_v5_gn_5_108760 Lactuca sativa HOM05D003899 ORTHO05D003655 6.9e-15 84.7 86 53.5
Carub.0001s3477 Capsella rubella HOM05D003899 ORTHO05D003655 1.2e-14 84.0 90 47.8
EL10Ac6g15278 Beta vulgaris HOM05D003899 ORTHO05D003655 1.5e-14 83.6 105 41.9
SGA_v2.0_scaffold73G24343 Striga asiatica HOM05D003899 ORTHO05D003655 2.6e-14 82.8 96 45.8
MD10G1014900 Malus domestica HOM05D003899 ORTHO05D003655 3.4e-14 82.4 103 42.7
Nitab4.5_0002974g0030 Nicotiana tabacum HOM05D003899 ORTHO05D003655 3.4e-14 82.4 113 42.5
Dinv25809 Davidia involucrata HOM05D003899 ORTHO05D003655 4.5e-14 82.0 54 66.7
EL10Ac7g17632 Beta vulgaris HOM05D003899 ORTHO05D003655 7.7e-14 81.3 105 41.0
HanXRQChr04g0125201 Helianthus annuus HOM05D003899 ORTHO05D003655 1.3e-13 80.5 110 41.8
Lalb_Chr25g0281721 Lupinus albus HOM05D003899 ORTHO05D003655 1.3e-13 80.5 116 43.1
PGR044G1758 Punica granatum HOM05D003899 ORTHO05D003655 2.2e-13 79.7 73 56.2
PGSC0003DMG400024810 Solanum tuberosum HOM05D003899 ORTHO05D003655 2.9e-13 79.3 114 45.6
Medtr1g008620 Medicago truncatula HOM05D003899 ORTHO05D003655 3.8e-13 79.0 83 49.4
PGSC0003DMG400027629 Solanum tuberosum HOM05D003899 ORTHO05D003655 6.5e-13 78.2 88 47.7
Medtr1g008675 Medicago truncatula HOM05D003899 ORTHO05D003655 1.1e-12 77.4 93 43.0
Aqoxy3G00817 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 1.4e-12 77.0 125 38.4
Manes.18G087500 Manihot esculenta HOM05D003899 ORTHO05D003655 1.9e-12 76.6 83 53.0
Nitab4.5_0004770g0030 Nicotiana tabacum HOM05D003899 ORTHO05D003655 1.9e-12 76.6 153 47.1
AUR62003600 Chenopodium quinoa HOM05D003899 ORTHO05D003655 2.5e-12 76.3 113 54.9
MELO3C023688.2 Cucumis melo HOM05D003899 ORTHO05D003655 2.5e-12 76.3 90 46.7
MBI06_g43012_MAGBIO Magnolia biondii HOM05D003899 ORTHO05D003655 2.5e-12 76.3 121 38.8
Psat6g033720 Pisum sativum HOM05D003899 ORTHO05D003655 2.5e-12 76.3 84 47.6
CAN.G1012.7 Capsicum annuum HOM05D003899 ORTHO05D003655 3.2e-12 75.9 120 41.7
COL.COLO4_14024 Corchorus olitorius HOM05D003899 ORTHO05D003655 3.2e-12 75.9 93 40.9
Solyc07g045590.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 3.2e-12 75.9 120 40.8
QL02p025328 Quercus lobata HOM05D003899 ORTHO05D003655 4.2e-12 75.5 73 47.9
Solyc03g033290.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 5.5e-12 75.1 127 51.2
HanXRQChr05g0161081 Helianthus annuus HOM05D003899 ORTHO05D003655 9.4e-12 74.3 87 47.1
Sed0020885 Sechium edule HOM05D003899 ORTHO05D003655 9.4e-12 74.3 98 39.8
Dinv41123 Davidia involucrata HOM05D000043 ORTHO05D002577 1.2e-11 73.9 81 48.1
HanXRQChr08g0232541 Helianthus annuus HOM05D003899 ORTHO05D003655 1.2e-11 73.9 87 47.1
AUR62043709 Chenopodium quinoa HOM05D003899 ORTHO05D003655 1.6e-11 73.6 69 50.7
Nitab4.5_0015327g0010 Nicotiana tabacum HOM05D003899 ORTHO05D003655 1.6e-11 73.6 119 37.0
CSS0023777 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 3.6e-11 72.4 82 50.0
Nitab4.5_0000299g0020 Nicotiana tabacum HOM05D003899 ORTHO05D003655 3.6e-11 72.4 155 45.8
TPR.G12083 Trifolium pratense HOM05D003899 ORTHO05D003655 3.6e-11 72.4 94 42.6
TAR381G0487 Trochodendron aralioides HOM05D003899 ORTHO05D003655 3.6e-11 72.4 82 50.0
ECA246G3613 Erigeron canadensis HOM05D003899 ORTHO05D003655 6.1e-11 71.6 104 40.4
Nn1g06205 Nelumbo nucifera HOM05D003899 ORTHO05D003655 6.1e-11 71.6 77 45.5
Psat6g033800 Pisum sativum HOM05D003899 ORTHO05D003655 6.1e-11 71.6 93 41.9
Solyc03g033280.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 6.1e-11 71.6 118 40.7
Thhalv10012251m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 8.0e-11 71.2 97 38.1
Nn5g28622 Nelumbo nucifera HOM05D003899 ORTHO05D003655 8.0e-11 71.2 77 45.5
Cfa013717 Carpinus fangiana HOM05D009119 ORTHO05D003655 1.0e-10 70.9 84 45.2
CsaV3_7G024950 Cucumis sativus L. HOM05D000219 ORTHO05D000226 1.4e-10 70.5 136 35.3
Dinv03732 Davidia involucrata HOM05D000043 ORTHO05D002577 1.4e-10 70.5 80 46.2
Duzib093G0910 Durio zibethinus HOM05D003899 ORTHO05D003655 1.4e-10 70.5 184 40.2
PSO126G0001 Papaver somniferum HOM05D003899 ORTHO05D003655 1.8e-10 70.1 73 50.7
PGSC0003DMG400024811 Solanum tuberosum HOM05D003899 ORTHO05D003655 1.8e-10 70.1 184 40.2
CiPaw.15G021500 Carya illinoinensis HOM05D003899 ORTHO05D003655 2.3e-10 69.7 79 46.8
Peaxi162Scf00263g00033 Petunia axillaris HOM05D003899 ORTHO05D003655 2.3e-10 69.7 101 38.6
Nn1g06203 Nelumbo nucifera HOM05D003899 ORTHO05D003655 3.9e-10 68.9 88 45.5
Lj2C604T3 Lonicera japonica HOM05D003899 ORTHO05D003655 5.2e-10 68.6 81 42.0
AUR62013490 Chenopodium quinoa HOM05D003899 ORTHO05D003655 6.7e-10 68.2 95 41.1
Lj2C604T4 Lonicera japonica HOM05D003899 ORTHO05D003655 8.8e-10 67.8 78 43.6
Haze_22364 Corylus avellana HOM05D009119 ORTHO05D003655 1.1e-09 67.4 84 42.9
AUR62026786 Chenopodium quinoa HOM05D003899 ORTHO05D003655 2.0e-09 66.6 95 40.0
AT5G48920 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 3.3e-09 65.9 78 43.6
Hma1.2p1_0528F.1_g173010 Hydrangea macrophylla HOM05D003899 ORTHO05D003655 5.7e-09 65.1 69 42.0
DCAR_001362 Daucus carota HOM05D003899 ORTHO05D003655 7.4e-09 64.7 82 39.0
Phvul.001G073300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 9.7e-09 64.3 50 56.0
TPR.G33315 Trifolium pratense HOM05D003899 ORTHO05D003655 9.7e-09 64.3 83 41.0
BcaB03g16849 Brassica carinata HOM05D003899 ORTHO05D003655 1.7e-08 63.5 79 40.5
COL.COLO4_11973 Corchorus olitorius HOM05D009119 ORTHO05D003655 1.7e-08 63.5 91 45.1
ClCG09G009790 Citrullus lanatus HOM05D003899 ORTHO05D003655 2.2e-08 63.2 141 34.0
Atru.chr13.1710 Acer truncatum HOM05D003899 ORTHO05D003655 2.8e-08 62.8 37 73.0
CAN.G833.2 Capsicum annuum HOM05D003899 ORTHO05D003655 3.7e-08 62.4 85 43.5
Cpa.g.sc49.66 Carica papaya HOM05D003899 ORTHO05D003655 3.7e-08 62.4 80 45.0
PGR002G0009 Punica granatum HOM05D003899 ORTHO05D003655 3.7e-08 62.4 45 60.0
Thecc.08G065300 Theobroma cacao HOM05D009119 ORTHO05D003655 3.7e-08 62.4 80 47.5
CARHR046070 Cardamine hirsuta HOM05D003899 ORTHO05D003655 4.8e-08 62.0 64 48.4
Lalb_Chr23g0271351 Lupinus albus HOM05D003899 ORTHO05D003655 4.8e-08 62.0 102 37.3
Cpa.g.sc42.130 Carica papaya HOM05D003899 ORTHO05D003655 6.3e-08 61.6 78 37.2
Phvul.001G052300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 1.1e-07 60.8 72 41.7
TWI79G1413 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 1.1e-07 60.8 77 40.3
CANSAT11G1227 Cannabis sativa HOM05D003899 ORTHO05D003655 1.4e-07 60.5 75 40.0
Nitab4.5_0001140g0230 Nicotiana tabacum HOM05D003899 ORTHO05D003655 1.8e-07 60.1 79 40.5
Potri.002G072000 Populus trichocarpa HOM05D003899 ORTHO05D003655 2.4e-07 59.7 166 39.2
Nitab4.5_0008388g0020 Nicotiana tabacum HOM05D003899 ORTHO05D003655 3.1e-07 59.3 80 41.2
Sp1g41920 Schrenkiella parvula HOM05D003899 ORTHO05D003655 3.1e-07 59.3 67 44.8
PGSC0003DMG400030777 Solanum tuberosum HOM05D003899 ORTHO05D003655 3.1e-07 59.3 110 39.1
PGSC0003DMG400030778 Solanum tuberosum HOM05D003899 ORTHO05D003655 7.0e-07 58.2 87 41.4
Glyma.14G122000 Glycine max HOM05D003899 ORTHO05D003655 9.1e-07 57.8 51 54.9
QL09p016294 Quercus lobata HOM05D009119 ORTHO05D003655 9.1e-07 57.8 101 42.6
Sabra07G0088500 Salix brachista HOM05D000850 ORTHO05D000266 9.1e-07 57.8 118 29.7
CSS0000461 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 1.2e-06 57.4 163 32.5
QL09p016276 Quercus lobata HOM05D009119 ORTHO05D003655 1.2e-06 57.4 71 45.1
Sc16g0003890 Simmondsia chinensis HOM05D003899 ORTHO05D003655 1.2e-06 57.4 93 35.5
Duzib093G1486 Durio zibethinus HOM05D009119 ORTHO05D003655 1.6e-06 57.0 115 36.5
Ah.05g167520 Amaranthus hybridus HOM05D000219 ORTHO05D000226 2.6e-06 56.2 75 41.3
ECA238G1798 Erigeron canadensis HOM05D003899 ORTHO05D003655 2.6e-06 56.2 59 49.2
Migut.M00600 Erythranthe guttata HOM05D003899 ORTHO05D003655 2.6e-06 56.2 75 40.0
Sopen06g019720 Solanum pennellii HOM05D003899 ORTHO05D003655 2.6e-06 56.2 110 38.2
THA.LOC104800071 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 3.5e-06 55.8 76 34.2
VMungo0647G2071 Vigna mungo HOM05D003899 ORTHO05D003655 3.5e-06 55.8 47 48.9
Os08g0108300 Oryza sativa ssp. japonica HOM05D053309 ORTHO05D003655 4.5e-06 55.5 111 37.8
AL1G64600 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 5.9e-06 55.1 64 42.2
PGR002G0007 Punica granatum HOM05D003899 ORTHO05D003655 7.7e-06 54.7 39 64.1
Sc02g0004420 Simmondsia chinensis HOM05D003899 ORTHO05D003655 7.7e-06 54.7 134 43.3


User provided reference genes

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