Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI32G0006 Tripterygium wilfordii HOM05D006404 ORTHO05D008170 0.0e+00 1907.9 924 100.0
Ciclev10014162m.g Citrus clementina HOM05D006404 ORTHO05D008170 0.0e+00 1342.0 946 68.2
QL01p004100 Quercus lobata HOM05D006404 ORTHO05D008170 0.0e+00 1327.8 935 67.7
Cfa009810 Carpinus fangiana HOM05D006404 ORTHO05D008170 0.0e+00 1325.5 943 66.9
Potri.001G255700 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1325.5 948 67.4
Thecc.09G239000 Theobroma cacao HOM05D006404 ORTHO05D008170 0.0e+00 1315.1 942 66.8
Potri.009G051100 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1304.7 948 66.6
Manes.06G162300 Manihot esculenta HOM05D006404 ORTHO05D008170 0.0e+00 1303.5 949 66.5
GSVIVG01031534001 Vitis vinifera HOM05D006404 ORTHO05D008170 0.0e+00 1302.7 938 66.1
RcHm_v2.0_Chr5g0053011 Rosa chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1301.6 941 66.1
MD03G1172000 Malus domestica HOM05D006404 ORTHO05D008170 0.0e+00 1298.9 953 65.4
TAR633G0603 Trochodendron aralioides HOM05D006404 ORTHO05D008170 0.0e+00 1292.3 940 66.1
FAN16G0405 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1291.9 942 65.9
FvH4_3g28450 Fragaria vesca HOM05D006404 ORTHO05D008170 0.0e+00 1284.2 942 65.6
FAN11G2181 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1284.2 942 65.5
CSS0037938 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 0.0e+00 1275.4 945 65.4
FAN21G1559 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1270.0 964 64.1
Gorai.009G074000 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1266.9 945 64.9
Gorai.006G126600 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1251.9 929 64.7
Gohir.D09G109000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 0.0e+00 1247.6 929 64.6
COL.COLO4_36457 Corchorus olitorius HOM05D006404 ORTHO05D008170 0.0e+00 1229.2 838 69.7
Sabra09G0037200 Salix brachista HOM05D006404 ORTHO05D008170 0.0e+00 1220.3 915 64.7
Rhsim13G0217700 Rhododendron simsii HOM05D006404 ORTHO05D008170 0.0e+00 1219.9 977 61.2
Haze_23174 Corylus avellana HOM05D006404 ORTHO05D008170 0.0e+00 1216.8 928 63.9
Duzib150G0746 Durio zibethinus HOM05D006404 ORTHO05D008170 0.0e+00 1207.6 942 62.7
Cc01_g05020 Coffea canephora HOM05D006404 ORTHO05D008170 0.0e+00 1194.9 948 60.9
Prupe.4G254900 Prunus persica HOM05D006404 ORTHO05D008170 0.0e+00 1192.6 817 68.3
Sabra16G0156500 Salix brachista HOM05D006404 ORTHO05D008170 0.0e+00 1191.4 913 65.1
Eucgr.B03709 Eucalyptus grandis HOM05D006404 ORTHO05D008170 0.0e+00 1190.6 921 61.3
Nn7g36358 Nelumbo nucifera HOM05D006404 ORTHO05D008170 0.0e+00 1188.3 942 60.2
Actinidia06923 Actinidia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1176.4 854 66.0
PGR102G1713 Punica granatum HOM05D006404 ORTHO05D008170 0.0e+00 1172.5 926 61.6
MELO3C015171.2 Cucumis melo HOM05D006404 ORTHO05D008170 0.0e+00 1169.5 929 61.0
ClCG03G013070 Citrullus lanatus HOM05D006404 ORTHO05D008170 0.0e+00 1169.1 931 61.2
CsaV3_1G042990 Cucumis sativus L. HOM05D006404 ORTHO05D008170 0.0e+00 1168.3 936 61.1
Nn2g15163 Nelumbo nucifera HOM05D006404 ORTHO05D008170 0.0e+00 1168.3 941 59.5
Nitab4.5_0007711g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 0.0e+00 1159.4 944 60.4
CANSAT54G0859 Cannabis sativa HOM05D006404 ORTHO05D008170 0.0e+00 1158.3 874 63.5
MSTRG.12459 Avicennia marina HOM05D006404 ORTHO05D008170 0.0e+00 1153.3 941 58.9
CAN.G494.3 Capsicum annuum HOM05D006404 ORTHO05D008170 0.0e+00 1139.8 941 59.2
Solyc11g065340.2 Solanum lycopersicum HOM05D006404 ORTHO05D008170 0.0e+00 1135.2 937 58.6
Oeu061307.1 Olea europaea HOM05D006404 ORTHO05D008170 0.0e+00 1130.9 860 63.4
Glyma.01G227500 Glycine max HOM05D006404 ORTHO05D008170 0.0e+00 1122.8 942 59.3
VMungo1127G0106 Vigna mungo HOM05D006404 ORTHO05D008170 0.0e+00 1120.5 941 59.5
Sed0002434 Sechium edule HOM05D006404 ORTHO05D008170 0.0e+00 1120.1 936 59.1
Glyma.12G020900 Glycine max HOM05D006404 ORTHO05D008170 0.0e+00 1114.4 942 59.7
Hund07470 Selenicereus undatus HOM05D006404 ORTHO05D008170 0.0e+00 1111.7 932 58.2
Sopen11g025080 Solanum pennellii HOM05D006404 ORTHO05D008170 0.0e+00 1111.7 930 58.5
Medtr4g076810 Medicago truncatula HOM05D006404 ORTHO05D008170 0.0e+00 1109.4 925 59.8
Psat7g172680 Pisum sativum HOM05D006404 ORTHO05D008170 0.0e+00 1108.6 931 59.0
Lj3g0019929 Lotus japonicus HOM05D006404 ORTHO05D008170 0.0e+00 1105.1 937 59.1
Actinidia16347 Actinidia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1096.3 784 65.9
Nitab4.5_0006123g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 0.0e+00 1090.9 912 59.5
VMungo1215G1207 Vigna mungo HOM05D006404 ORTHO05D008170 0.0e+00 1090.9 918 58.2
TPR.G13759 Trifolium pratense HOM05D006404 ORTHO05D008170 0.0e+00 1089.3 935 59.9
Aqoxy2G00213 Aquilegia oxysepala HOM05D006404 ORTHO05D008170 0.0e+00 1088.9 940 56.0
Sc16g0011280 Simmondsia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1087.0 897 59.0
Peaxi162Scf00004g03311 Petunia axillaris HOM05D006404 ORTHO05D008170 0.0e+00 1076.6 928 57.3
Migut.N02343 Erythranthe guttata HOM05D006404 ORTHO05D008170 6.3e-312 1073.5 926 57.5
PGSC0003DMG400029994 Solanum tuberosum HOM05D006404 ORTHO05D008170 1.3e-307 1059.7 870 59.2
Lalb_Chr03g0024521 Lupinus albus HOM05D006404 ORTHO05D008170 1.7e-307 1059.3 926 56.4
THA.LOC104811179 Tarenaya hassleriana HOM05D006404 ORTHO05D008170 1.4e-306 1056.2 939 56.3
AUR62000151 Chenopodium quinoa HOM05D006404 ORTHO05D008170 2.3e-304 1048.9 895 58.1
Atru.chr3.2649 Acer truncatum HOM05D006404 ORTHO05D008170 3.0e-304 1048.5 713 68.6
CiPaw.13G154900 Carya illinoinensis HOM05D006404 ORTHO05D008170 3.0e-304 1048.5 739 67.0
vmacro04128 Vaccinium macrocarpon HOM05D006404 ORTHO05D008170 5.1e-304 1047.7 900 58.9
AUR62039864 Chenopodium quinoa HOM05D006404 ORTHO05D008170 3.7e-302 1041.6 895 58.1
DCAR_029968 Daucus carota HOM05D006404 ORTHO05D008170 6.9e-301 1037.3 893 55.8
arahy.Tifrunner.gnm1.ann1.E0EAPG Arachis hypogaea HOM05D006404 ORTHO05D008170 1.4e-298 1029.6 931 55.4
Ca_26059_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 3.6e-297 1025.0 810 61.2
Ca_30127_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 3.6e-297 1025.0 810 61.2
arahy.Tifrunner.gnm1.ann1.BK260Y Arachis hypogaea HOM05D006404 ORTHO05D008170 4.6e-297 1024.6 931 55.0
Zm00001eb332810 Zea mays HOM05D006404 ORTHO05D008170 3.7e-294 1015.0 911 55.2
Gohir.A05G070000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 2.2e-291 1005.7 746 65.1
HanXRQChr13g0401241 Helianthus annuus HOM05D006404 ORTHO05D008170 2.2e-291 1005.7 899 54.4
SGA_v2.0_scaffold3G01478 Striga asiatica HOM05D006404 ORTHO05D008170 9.4e-290 1000.3 943 54.1
MBI19_g45588_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 5.0e-283 978.0 836 57.4
Lsat_1_v5_gn_6_25840 Lactuca sativa HOM05D006404 ORTHO05D008170 4.2e-282 974.9 897 54.5
Lj2A624G32 Lonicera japonica HOM05D006404 ORTHO05D008170 9.7e-279 963.8 936 54.2
ECA233G0536 Erigeron canadensis HOM05D006404 ORTHO05D008170 1.1e-277 960.3 805 57.1
ATR0307G124 Amborella trichopoda HOM05D006404 ORTHO05D008170 5.0e-275 951.4 974 50.1
Ah.06g193910 Amaranthus hybridus HOM05D006404 ORTHO05D008170 1.5e-271 939.9 887 52.4
Duzib168G1842 Durio zibethinus HOM05D006404 ORTHO05D008170 2.2e-267 926.0 635 68.7
Glyma.11G094500 Glycine max HOM05D006404 ORTHO05D008170 1.0e-264 917.1 722 61.5
EL10Ac4g10212 Beta vulgaris HOM05D006404 ORTHO05D008170 1.4e-264 916.8 882 53.4
SEGI_17812 Sequoiadendron giganteum HOM05D006404 ORTHO05D008170 1.2e-263 913.7 936 49.9
Cpa.g.sc84.27 Carica papaya HOM05D006404 ORTHO05D008170 3.4e-255 885.6 815 54.5
Gohir.A09G112300 Gossypium hirsutum HOM05D006404 ORTHO05D008170 7.8e-252 874.4 616 67.4
Manes.14G004336 Manihot esculenta HOM05D006404 ORTHO05D008170 6.8e-240 834.7 942 49.8
CSS0019486 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 8.7e-203 711.4 486 67.7
Phvul.002G034601 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 1.7e-198 697.2 650 52.5
Mapoly0128s0014 Marchantia polymorpha HOM05D006404 ORTHO05D008170 2.9e-190 669.8 864 40.4
Os01g0275900 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 4.3e-186 656.0 573 54.1
Gohir.D05G073000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 6.9e-184 648.7 438 68.0
Phvul.011G076700 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 1.1e-168 598.2 558 56.5
Gohir.D05G072932 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.7e-158 564.3 473 61.1
unitig_27.g25000 Utricularia gibba HOM05D006404 ORTHO05D008170 9.4e-157 558.5 504 54.2
HPP92_028181 Vanilla planifolia HOM05D006404 ORTHO05D008170 1.3e-153 548.1 531 51.6
FAN25G0856 Fragaria x ananassa HOM05D006404 ORTHO05D008170 4.0e-131 473.4 391 61.4
CBR_g12234 Chara braunii HOM05D006404 ORTHO05D008170 6.0e-127 459.5 862 32.5
Glyma.11G015367 Glycine max HOM05D006404 ORTHO05D008170 7.5e-122 442.6 379 57.8
HPP92_028182 Vanilla planifolia HOM05D006404 ORTHO05D008170 3.2e-104 384.0 303 58.1
Gohir.A09G112350 Gossypium hirsutum HOM05D006404 ORTHO05D008170 5.8e-90 336.7 291 58.4
Duzib168G1560 Durio zibethinus HOM05D006404 ORTHO05D008170 1.9e-77 295.0 251 59.0
TAR633G2510 Trochodendron aralioides HOM05D006404 ORTHO05D008170 1.4e-75 288.9 278 54.7
Os01g0275950 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 6.7e-70 270.0 284 48.2
PGSC0003DMG400035426 Solanum tuberosum HOM05D006404 ORTHO05D008170 8.2e-68 263.1 206 59.7
unitig_27.g24999 Utricularia gibba HOM05D006404 ORTHO05D008170 3.9e-62 244.2 292 43.5
MBI19_g48146_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 7.9e-55 219.9 270 46.3
Atru.chr3.2650 Acer truncatum HOM05D006404 ORTHO05D008170 4.4e-37 161.0 106 74.5
PRCOL_00003209 Prasinoderma coloniale HOM05D006404 ORTHO05D008170 1.7e-33 149.1 898 23.1
Lsat_1_v5_gn_4_119980 Lactuca sativa HOM05D006404 ORTHO05D008170 5.0e-33 147.5 134 54.5
Lsat_1_v5_gn_5_69941 Lactuca sativa HOM05D006404 ORTHO05D008170 1.5e-32 146.0 159 49.7
Lsat_1_v5_gn_8_47480 Lactuca sativa HOM05D006404 ORTHO05D008170 1.5e-32 146.0 159 49.1
PGSC0003DMG400025695 Solanum tuberosum HOM05D006404 ORTHO05D008170 2.3e-30 138.7 112 55.4
HPP92_012439 Vanilla planifolia HOM05D006404 ORTHO05D008170 7.5e-29 133.7 220 36.8
Atru.chr3.2651 Acer truncatum HOM05D006404 ORTHO05D008170 2.3e-22 112.1 88 54.5
MELO3C030880.2 Cucumis melo HOM05D006404 ORTHO05D008170 2.2e-20 105.5 87 57.5
Thecc.01G390500 Theobroma cacao HOM05D006404 ORTHO05D008170 1.5e-16 92.8 95 48.4
MELO3C034790.2 Cucumis melo HOM05D006404 ORTHO05D008170 7.5e-13 80.5 50 68.0
TAR623G1438 Trochodendron aralioides HOM05D006201 ORTHO05D007178 3.7e-12 78.2 85 51.8
COL.COLO4_24475 Corchorus olitorius HOM05D003120 ORTHO05D003568 6.4e-12 77.4 42 81.0
MELO3C028471.2 Cucumis melo HOM05D006404 ORTHO05D008170 4.1e-11 74.7 52 61.5
MELO3C034469.2 Cucumis melo HOM05D006404 ORTHO05D003726 2.3e-09 68.9 57 54.4


User provided reference genes

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