Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.0e-63 246.5 118 100.0
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 8.0e-61 236.9 118 94.9
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.0e-60 236.5 118 95.8
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 1.6e-53 212.6 114 86.8
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 4.7e-53 211.1 115 87.0
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 4.7e-53 211.1 115 86.1
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 6.2e-53 210.7 114 86.0
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 1.0e-52 209.9 115 86.1
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 2.3e-52 208.8 113 87.6
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 5.2e-52 207.6 115 84.3
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 5.2e-52 207.6 115 85.2
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 5.2e-52 207.6 114 83.3
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 6.8e-52 207.2 115 83.5
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 8.9e-52 206.8 115 84.3
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 1.2e-51 206.5 114 85.1
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 1.2e-51 206.5 115 84.3
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 1.2e-51 206.5 118 83.1
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.2e-51 206.5 118 83.1
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 1.2e-51 206.5 115 86.1
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.5e-51 206.1 115 85.2
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 1.5e-51 206.1 115 84.3
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 1.5e-51 206.1 113 83.2
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.0e-51 205.7 118 83.1
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.0e-51 205.7 115 83.5
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.6e-51 205.3 118 82.2
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 2.6e-51 205.3 115 84.3
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 2.6e-51 205.3 115 82.6
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 3.4e-51 204.9 114 84.2
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.4e-51 204.9 115 83.5
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 3.4e-51 204.9 115 84.3
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 5.8e-51 204.1 115 83.5
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 7.5e-51 203.8 113 85.0
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 9.8e-51 203.4 115 83.5
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 9.8e-51 203.4 115 82.6
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 9.8e-51 203.4 115 82.6
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 9.8e-51 203.4 113 82.3
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 1.3e-50 203.0 113 82.3
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 1.7e-50 202.6 110 83.6
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.7e-50 202.6 115 80.9
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 2.2e-50 202.2 113 84.1
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 2.2e-50 202.2 115 82.6
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 2.9e-50 201.8 115 83.5
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 2.9e-50 201.8 114 81.6
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 3.7e-50 201.4 111 84.7
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 6.4e-50 200.7 115 83.5
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 8.3e-50 200.3 114 82.5
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 1.1e-49 199.9 115 80.9
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 1.1e-49 199.9 115 80.9
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 1.9e-49 199.1 111 82.9
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 1.9e-49 199.1 111 84.7
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 5.4e-49 197.6 115 79.1
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 5.4e-49 197.6 115 79.1
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 5.4e-49 197.6 113 83.2
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 7.0e-49 197.2 111 82.9
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 9.2e-49 196.8 115 80.0
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 1.2e-48 196.4 113 80.5
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 1.6e-48 196.1 114 81.6
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 1.6e-48 196.1 115 80.9
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 2.0e-48 195.7 111 82.0
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 2.7e-48 195.3 115 78.3
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 3.5e-48 194.9 115 78.3
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 4.6e-48 194.5 112 82.1
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 6.0e-48 194.1 115 76.5
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 7.8e-48 193.7 115 80.0
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 7.8e-48 193.7 111 82.9
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 7.8e-48 193.7 136 70.6
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 7.8e-48 193.7 111 79.3
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 7.8e-48 193.7 111 79.3
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 1.3e-47 193.0 115 76.5
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 1.7e-47 192.6 115 78.3
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 1.7e-47 192.6 115 78.3
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 1.7e-47 192.6 115 78.3
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 1.7e-47 192.6 115 78.3
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 1.7e-47 192.6 115 77.4
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 2.3e-47 192.2 114 78.9
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 2.3e-47 192.2 110 81.8
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 2.3e-47 192.2 115 78.3
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 3.9e-47 191.4 115 78.3
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 3.9e-47 191.4 111 80.2
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 5.0e-47 191.0 115 77.4
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 5.0e-47 191.0 115 80.0
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 5.0e-47 191.0 110 80.9
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 6.6e-47 190.7 115 77.4
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 6.6e-47 190.7 115 77.4
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 6.6e-47 190.7 115 77.4
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 6.6e-47 190.7 115 75.7
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 1.1e-46 189.9 115 77.4
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.1e-46 189.9 117 78.6
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 2.5e-46 188.7 111 73.9
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 3.3e-46 188.3 112 77.7
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 4.3e-46 188.0 115 75.7
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 4.3e-46 188.0 115 75.7
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 4.3e-46 188.0 115 75.7
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 4.3e-46 188.0 115 75.7
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 4.3e-46 188.0 115 75.7
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 1.2e-45 186.4 115 76.5
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 2.8e-45 185.3 114 76.3
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 2.8e-45 185.3 107 81.3
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 3.6e-45 184.9 115 75.7
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 3.6e-45 184.9 107 80.4
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 4.7e-45 184.5 113 74.3
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.3e-44 182.2 104 81.7
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 1.5e-43 179.5 109 77.1
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 1.5e-43 179.5 102 80.4
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 4.4e-43 177.9 115 74.8
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 5.8e-43 177.6 179 53.6
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 2.2e-42 175.6 111 70.3
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 2.2e-42 175.6 106 75.5
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 6.4e-42 174.1 100 80.0
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 1.4e-41 172.9 150 59.3
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 1.9e-41 172.6 103 76.7
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 2.4e-41 172.2 103 74.8
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 2.4e-41 172.2 103 74.8
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 3.2e-41 171.8 105 77.1
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 4.1e-41 171.4 96 82.3
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 5.4e-41 171.0 102 76.5
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.6e-40 169.5 105 76.2
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 4.6e-40 167.9 105 74.3
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 4.3e-38 161.4 130 63.1
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 6.8e-36 154.1 115 67.0
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 1.3e-34 149.8 91 79.1
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 2.4e-33 145.6 107 62.6
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 1.2e-32 143.3 116 62.9
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 3.5e-32 141.7 111 58.6
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 4.6e-32 141.4 111 56.8
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 1.5e-30 136.3 85 74.1
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 2.8e-29 132.1 104 57.7
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 1.1e-28 130.2 115 58.3
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 3.8e-26 121.7 114 51.8
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 2.1e-24 115.9 57 87.7
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 2.7e-24 115.5 57 86.0
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 6.6e-23 110.9 57 82.5
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.9e-22 109.4 85 65.9
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 7.3e-22 107.5 103 50.5
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 7.3e-22 107.5 105 49.5
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 9.6e-22 107.1 57 82.5
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 2.8e-21 105.5 60 75.0
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 4.5e-19 98.2 96 51.0
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 3.8e-18 95.1 58 82.8
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 3.2e-17 92.0 113 45.1
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 4.2e-17 91.7 56 78.6
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 4.2e-17 91.7 149 42.3
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 2.1e-16 89.4 83 57.8
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 9.6e-14 80.5 79 55.7
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 6.2e-13 77.8 55 63.6
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 2.6e-11 72.4 47 66.0
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 7.1e-09 64.3 104 35.6
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 1.3e-07 60.1 84 46.4


User provided reference genes

Program Settings