Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 1.8e-207 725.7 378 100.0
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 1.7e-165 586.3 337 88.1
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 4.0e-162 575.1 352 83.8
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 7.0e-159 564.3 336 86.0
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 2.0e-158 562.8 355 82.0
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 3.5e-158 562.0 354 82.8
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 1.7e-157 559.7 335 86.0
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 2.3e-157 559.3 335 85.7
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 3.9e-157 558.5 336 83.0
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 1.5e-156 556.6 359 80.5
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 3.3e-156 555.4 335 85.1
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 4.3e-156 555.1 335 83.6
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 5.6e-156 554.7 335 85.4
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 1.6e-155 553.1 335 83.0
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 1.6e-155 553.1 335 82.7
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 3.6e-155 552.0 354 80.2
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 8.0e-155 550.8 334 85.0
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 1.4e-154 550.1 335 83.3
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 2.3e-154 549.3 362 78.7
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 2.3e-154 549.3 338 82.0
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 2.3e-154 549.3 341 82.7
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 3.1e-154 548.9 348 80.2
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 3.1e-154 548.9 343 81.0
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 5.2e-154 548.1 335 83.9
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 5.2e-154 548.1 341 82.4
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 6.8e-154 547.7 398 73.9
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 1.5e-153 546.6 328 85.1
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 3.4e-153 545.4 315 87.3
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 1.3e-152 543.5 337 82.8
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 2.2e-152 542.7 338 81.1
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 2.9e-152 542.3 335 81.8
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 3.7e-152 542.0 350 78.0
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 3.7e-152 542.0 330 82.4
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 3.7e-152 542.0 339 81.4
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 8.3e-152 540.8 337 81.6
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 8.3e-152 540.8 336 82.1
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 8.3e-152 540.8 343 80.2
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 1.1e-151 540.4 335 81.5
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 1.9e-151 539.7 335 81.2
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 4.1e-151 538.5 338 81.7
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 7.0e-151 537.7 339 81.4
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 1.2e-150 537.0 336 82.1
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 7.8e-150 534.3 331 83.1
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 7.8e-150 534.3 335 81.8
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.0e-149 533.9 342 79.5
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 1.0e-149 533.9 353 76.8
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 1.7e-149 533.1 335 81.8
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 1.7e-149 533.1 348 79.0
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 2.3e-149 532.7 346 80.1
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 2.3e-149 532.7 336 80.4
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 3.0e-149 532.3 337 81.3
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 3.0e-149 532.3 337 81.3
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 3.9e-149 531.9 336 81.2
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 5.0e-149 531.6 336 80.1
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 8.6e-149 530.8 335 81.2
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 2.5e-148 529.3 337 80.7
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 3.3e-148 528.9 316 83.5
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 7.3e-148 527.7 337 80.4
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 1.2e-147 526.9 335 79.7
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 1.6e-147 526.6 369 74.0
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 2.8e-147 525.8 342 78.4
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 1.1e-146 523.9 335 79.1
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 2.3e-146 522.7 336 77.7
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 2.3e-146 522.7 335 79.7
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 6.8e-146 521.2 360 74.7
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 6.8e-146 521.2 335 79.4
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 3.4e-145 518.8 337 79.5
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 4.4e-145 518.5 311 83.6
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 9.8e-145 517.3 361 75.3
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 9.8e-145 517.3 354 76.0
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 1.3e-144 516.9 337 78.9
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 1.7e-144 516.5 356 75.0
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 1.9e-143 513.1 311 83.3
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 9.2e-143 510.8 318 81.1
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 6.0e-142 508.1 311 82.0
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 1.9e-140 503.1 303 84.2
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 6.2e-139 498.0 337 78.0
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 2.3e-138 496.1 304 83.6
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 8.9e-138 494.2 335 74.0
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 3.8e-136 488.8 366 68.3
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 4.9e-136 488.4 383 69.5
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 4.9e-136 488.4 348 70.4
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 2.7e-134 482.6 315 79.4
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 5.1e-133 478.4 290 83.8
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 1.9e-132 476.5 302 80.1
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 3.3e-132 475.7 340 73.5
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 1.6e-131 473.4 330 75.2
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 3.6e-131 472.2 337 75.1
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 2.0e-129 466.5 287 82.6
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 2.6e-129 466.1 297 79.8
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 1.1e-127 460.7 284 82.4
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 4.2e-127 458.8 389 64.8
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 3.3e-124 449.1 314 72.0
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 1.3e-123 447.2 344 70.3
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 1.1e-122 444.1 282 79.8
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 2.4e-119 433.0 357 67.5
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 6.0e-118 428.3 335 67.8
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 3.0e-117 426.0 314 69.1
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 6.7e-117 424.9 344 66.6
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 1.2e-113 414.1 321 63.9
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 9.9e-113 411.0 349 63.0
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 1.5e-108 397.1 242 83.9
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 1.4e-106 390.6 255 77.3
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 2.5e-100 369.8 233 79.4
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 7.6e-97 358.2 217 80.6
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 6.5e-88 328.6 303 57.1
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 4.8e-83 312.4 230 68.7
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 4.5e-81 305.8 308 55.5
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 1.0e-80 304.7 308 53.9
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 1.3e-80 304.3 192 80.7
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 5.2e-77 292.4 224 67.0
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 8.8e-77 291.6 187 79.7
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 2.4e-74 283.5 220 66.8
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 1.2e-68 264.6 167 82.0
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 8.2e-67 258.5 335 48.1
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 1.4e-61 241.1 286 50.0
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 3.7e-59 233.0 151 77.5
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 1.5e-55 221.1 160 73.1
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 1.3e-51 208.0 143 72.7
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 1.2e-49 201.4 242 53.3
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 2.0e-41 174.1 151 58.9
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 2.7e-41 173.7 112 75.0
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 1.0e-40 171.8 110 73.6
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 6.6e-40 169.1 264 41.7
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 6.2e-38 162.5 265 41.9
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 3.1e-37 160.2 280 35.4
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 2.5e-31 140.6 243 43.2
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 7.3e-31 139.0 85 77.6
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 4.7e-30 136.3 101 73.3
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 1.2e-25 121.7 81 77.8
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 1.5e-23 114.8 77 70.1
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 1.2e-20 105.1 108 55.6
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 2.9e-19 100.5 53 88.7
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.1e-18 98.6 88 64.8
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 9.2e-18 95.5 62 72.6
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 1.2e-17 95.1 113 50.4
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.6e-17 94.7 59 84.7
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 2.7e-17 94.0 70 72.9
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 6.2e-14 82.8 55 70.9
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 2.0e-12 77.8 43 86.0
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 2.7e-09 67.4 77 48.1


User provided reference genes

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