Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 9.8e-86 320.1 160 100.0
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 6.6e-58 227.6 149 79.9
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 1.0e-42 177.2 155 63.9
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 3.0e-42 175.6 168 60.7
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 3.0e-42 175.6 168 60.7
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 6.6e-42 174.5 155 61.3
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 8.7e-42 174.1 168 60.1
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 1.5e-41 173.3 157 61.1
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 5.6e-41 171.4 163 60.7
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 7.3e-41 171.0 155 60.6
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 1.2e-40 170.2 158 60.1
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 1.2e-40 170.2 145 63.4
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 2.1e-40 169.5 155 61.3
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 3.6e-40 168.7 155 61.9
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 8.1e-40 167.5 155 61.3
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 3.1e-39 165.6 157 62.4
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 1.5e-38 163.3 158 60.1
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 1.3e-37 160.2 156 58.3
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 2.2e-37 159.5 157 59.9
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 3.8e-37 158.7 149 57.7
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 6.4e-37 157.9 158 58.2
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 1.1e-36 157.1 155 58.1
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 1.4e-36 156.8 155 58.7
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 2.4e-36 156.0 155 56.8
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 2.4e-36 156.0 152 58.6
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 4.2e-36 155.2 157 54.8
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 5.4e-36 154.8 156 57.7
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 1.2e-35 153.7 163 56.4
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 2.1e-35 152.9 131 59.5
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 3.5e-35 152.1 160 56.2
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 4.6e-35 151.8 135 62.2
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 7.8e-35 151.0 155 52.9
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 1.0e-34 150.6 155 56.8
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 3.0e-34 149.1 128 59.4
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 8.7e-34 147.5 166 53.0
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 8.7e-34 147.5 166 53.0
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 8.7e-34 147.5 164 51.8
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 1.1e-33 147.1 157 54.8
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 3.3e-33 145.6 136 58.1
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 7.3e-33 144.4 155 52.9
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 9.6e-33 144.1 147 52.4
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 9.6e-33 144.1 165 52.1
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 2.1e-32 142.9 150 52.0
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 2.1e-32 142.9 181 49.2
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 2.1e-32 142.9 129 61.2
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 3.6e-32 142.1 161 49.1
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 3.6e-32 142.1 165 48.5
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 4.8e-32 141.7 148 54.7
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 6.2e-32 141.4 151 58.3
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 6.2e-32 141.4 166 51.8
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 8.1e-32 141.0 150 52.0
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 1.8e-31 139.8 165 47.3
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 2.4e-31 139.4 157 51.6
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 6.9e-31 137.9 154 50.6
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 1.2e-30 137.1 154 52.6
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 1.5e-30 136.7 154 50.6
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 2.0e-30 136.3 158 48.7
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 5.8e-30 134.8 160 48.8
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 5.8e-30 134.8 156 50.0
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 5.8e-30 134.8 157 51.6
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 5.8e-30 134.8 157 51.6
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 7.6e-30 134.4 157 51.6
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 1.3e-29 133.7 137 53.3
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 1.7e-29 133.3 158 49.4
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 2.2e-29 132.9 158 47.5
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 2.9e-29 132.5 144 52.8
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 6.4e-29 131.3 158 47.5
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 1.1e-28 130.6 159 45.3
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 1.1e-28 130.6 143 51.0
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 1.9e-28 129.8 119 62.2
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 1.9e-28 129.8 161 49.7
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 2.4e-28 129.4 160 46.2
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 3.2e-28 129.0 150 50.0
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 4.2e-28 128.6 116 55.2
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 5.4e-28 128.3 114 57.9
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 7.1e-28 127.9 81 72.8
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 1.2e-27 127.1 146 51.4
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 1.6e-27 126.7 158 49.4
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 2.1e-27 126.3 146 50.7
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 2.1e-27 126.3 157 48.4
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 4.6e-27 125.2 146 47.9
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 7.9e-27 124.4 157 49.0
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 1.3e-26 123.6 141 49.6
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 1.3e-26 123.6 141 49.6
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 1.3e-26 123.6 141 50.4
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 1.3e-26 123.6 127 52.8
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 2.3e-26 122.9 151 47.0
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 5.1e-26 121.7 141 49.6
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 5.1e-26 121.7 155 47.1
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 6.7e-26 121.3 141 48.9
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 8.7e-26 120.9 129 51.9
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 1.5e-25 120.2 118 54.2
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 3.3e-25 119.0 83 67.5
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 5.6e-25 118.2 152 46.1
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 1.3e-24 117.1 84 61.9
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 4.8e-24 115.2 148 50.0
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 8.1e-24 114.4 152 46.7
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 2.0e-22 109.8 151 47.0
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 3.4e-22 109.0 151 47.0
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 4.5e-22 108.6 118 50.8
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 9.9e-22 107.5 138 46.4
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 9.9e-22 107.5 138 46.4
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 1.3e-21 107.1 127 51.2
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 1.1e-20 104.0 148 48.0
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 1.9e-20 103.2 100 56.0
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 1.9e-20 103.2 108 55.6
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 2.5e-20 102.8 105 52.4
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 3.2e-20 102.4 145 47.6
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 7.1e-20 101.3 152 41.4
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 7.1e-20 101.3 121 41.3
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 9.3e-20 100.9 99 52.5
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 1.2e-19 100.5 120 48.3
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 2.1e-19 99.8 84 54.8
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 6.0e-19 98.2 149 44.3
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 2.3e-18 96.3 122 45.9
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 9.6e-17 90.9 52 76.9
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 2.8e-16 89.4 152 41.4
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 2.8e-16 89.4 115 44.3
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 8.2e-16 87.8 53 73.6
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 1.4e-15 87.0 148 41.9
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 9.0e-15 84.3 154 41.6
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 2.6e-14 82.8 154 41.6
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 4.5e-14 82.0 152 40.8
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 7.6e-14 81.3 154 40.9
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 7.6e-14 81.3 154 40.9
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 7.6e-14 81.3 154 40.9
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 7.6e-14 81.3 156 40.4
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 7.6e-14 81.3 131 40.5
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 1.0e-13 80.9 153 39.9
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 1.0e-13 80.9 143 41.3
HPP92_019672 Vanilla planifolia HOM05D005114 ORTHO05D006301 2.9e-13 79.3 157 31.2
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 6.5e-13 78.2 146 39.0
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 6.5e-13 78.2 150 38.7
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 1.4e-12 77.0 151 41.1
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 1.9e-12 76.6 137 39.4
Dinv13785 Davidia involucrata HOM05D005114 ORTHO05D006301 3.2e-12 75.9 44 72.7
Dinv11287 Davidia involucrata HOM05D005114 ORTHO05D006301 1.2e-11 73.9 44 72.7
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 1.3e-10 70.5 142 37.3


User provided reference genes

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