Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.9e-181 639.0 319 100.0
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.2e-124 450.3 360 70.3
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.6e-124 449.9 361 70.4
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 1.6e-87 327.0 379 53.3
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 3.7e-84 315.8 390 51.3
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 1.4e-83 313.9 391 51.4
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 1.4e-83 313.9 391 51.4
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.4e-83 313.9 390 51.0
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 1.8e-83 313.5 367 53.1
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 5.3e-83 312.0 383 52.2
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 1.2e-82 310.8 387 50.4
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 2.2e-81 306.6 386 52.1
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.4e-80 303.9 391 50.1
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 3.6e-79 299.3 384 49.7
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 4.6e-79 298.9 395 48.4
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 1.0e-78 297.7 395 49.1
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 1.1e-77 294.3 383 50.1
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 9.7e-77 291.2 391 48.3
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 2.4e-75 286.6 376 48.4
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 2.6e-74 283.1 383 47.8
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 2.6e-74 283.1 375 50.4
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 5.9e-74 282.0 394 47.2
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 1.1e-72 277.7 407 45.2
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.2e-71 274.2 399 45.1
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 2.7e-71 273.1 402 46.3
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.3e-70 270.0 403 45.9
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 5.1e-70 268.9 412 46.6
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 4.4e-69 265.8 394 45.7
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 7.4e-69 265.0 373 47.2
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 7.4e-69 265.0 383 48.6
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 2.8e-68 263.1 378 46.0
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 6.3e-68 261.9 360 47.5
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 1.1e-67 261.2 380 46.3
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 4.1e-67 259.2 354 48.3
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.0e-65 254.6 353 48.2
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.0e-65 254.6 353 48.2
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.7e-65 253.8 352 47.2
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 2.2e-65 253.4 379 44.9
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 8.5e-65 251.5 387 44.2
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 2.1e-63 246.9 369 46.9
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 1.1e-61 241.1 367 45.8
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 1.5e-61 240.7 371 46.6
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 5.7e-61 238.8 380 45.8
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 2.7e-58 229.9 349 45.3
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 2.2e-57 226.9 398 42.5
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 8.0e-55 218.4 397 41.8
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.4e-54 217.6 404 40.8
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.8e-54 217.2 405 41.2
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 6.8e-54 215.3 404 41.1
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 8.8e-54 214.9 405 41.0
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 2.6e-53 213.4 338 41.1
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 3.4e-53 213.0 316 46.8
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 4.4e-53 212.6 369 44.7
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 4.4e-53 212.6 369 44.7
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 1.3e-52 211.1 351 41.6
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 2.4e-51 206.8 315 45.4
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 2.2e-49 200.3 342 41.5
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 3.8e-49 199.5 401 40.4
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 5.0e-49 199.1 327 43.7
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 6.5e-49 198.7 339 42.8
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.5e-48 196.8 369 42.5
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 3.2e-48 196.4 348 40.5
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 7.2e-48 195.3 422 38.4
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 7.2e-48 195.3 349 39.3
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 7.2e-48 195.3 416 38.9
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 1.2e-47 194.5 371 40.7
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 1.8e-46 190.7 249 48.6
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 2.0e-45 187.2 400 39.2
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 5.7e-45 185.7 326 39.6
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 1.7e-44 184.1 377 39.8
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 2.4e-43 180.3 343 39.7
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 3.1e-43 179.9 318 37.1
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 9.2e-43 178.3 227 49.8
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 9.2e-43 178.3 342 39.5
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 9.2e-43 178.3 318 36.8
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 1.6e-42 177.6 366 40.7
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 4.5e-42 176.0 406 36.7
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 1.3e-41 174.5 354 37.0
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 1.1e-40 171.4 329 38.0
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 1.1e-40 171.4 329 38.0
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 2.5e-40 170.2 328 37.2
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 3.3e-40 169.9 283 43.1
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 4.3e-40 169.5 349 37.8
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 7.3e-40 168.7 337 40.1
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 7.3e-40 168.7 359 38.2
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 1.2e-39 167.9 340 39.1
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 1.6e-39 167.5 355 36.9
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 3.6e-39 166.4 360 39.7
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 2.0e-37 160.6 250 47.6
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 1.7e-36 157.5 403 34.7
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 1.7e-36 157.5 340 38.8
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 2.2e-36 157.1 332 37.3
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 2.2e-36 157.1 332 37.3
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 3.2e-35 153.3 371 36.1
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 4.1e-35 152.9 382 36.4
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 5.4e-35 152.5 257 45.1
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 1.6e-34 151.0 342 39.2
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 1.6e-34 151.0 342 39.2
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 4.6e-34 149.4 352 37.5
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 2.1e-31 140.6 253 44.3
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 2.1e-31 140.6 368 36.4
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 3.6e-31 139.8 330 35.8
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 2.3e-30 137.1 325 32.6
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 4.0e-30 136.3 364 36.0
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 5.2e-30 136.0 267 39.0
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 2.6e-29 133.7 400 31.8
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 4.4e-29 132.9 402 32.1
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 7.5e-29 132.1 390 32.8
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 1.7e-28 131.0 336 32.7
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 3.7e-28 129.8 243 42.8
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 4.9e-28 129.4 320 32.5
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 8.3e-28 128.6 433 32.3
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 1.4e-27 127.9 276 36.6
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 2.4e-27 127.1 353 31.2
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 7.0e-27 125.6 367 31.6
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 3.5e-26 123.2 347 33.7
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 1.0e-25 121.7 229 42.4
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 3.9e-25 119.8 389 31.6
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 3.9e-25 119.8 298 37.2
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 3.9e-25 119.8 334 34.4
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 6.6e-25 119.0 245 40.0
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 6.6e-25 119.0 334 34.4
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 8.6e-25 118.6 389 31.4
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 8.6e-25 118.6 344 34.6
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 5.6e-24 115.9 389 30.6
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 7.3e-24 115.5 429 30.5
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 2.8e-23 113.6 334 34.1
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 6.2e-23 112.5 243 37.4
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 6.2e-23 112.5 226 40.3
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 8.1e-23 112.1 379 31.7
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 1.4e-22 111.3 243 37.0
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 1.4e-22 111.3 106 60.4
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 1.8e-22 110.9 233 38.6
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 1.8e-22 110.9 233 38.6
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 1.8e-22 110.9 233 38.6
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 3.1e-22 110.2 290 34.8
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 3.4e-21 106.7 212 43.4
ECA233G1390 Erigeron canadensis HOM05D004568 ORTHO05D005343 1.3e-20 104.8 251 34.7
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 3.7e-20 103.2 411 28.2
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 3.7e-20 103.2 388 29.6
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 4.9e-20 102.8 350 31.1
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 3.5e-18 96.7 400 28.5
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 4.6e-18 96.3 247 36.8
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 4.6e-18 96.3 185 38.9
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 7.3e-16 89.0 189 32.8
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 3.7e-12 76.6 241 34.0
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 4.9e-12 76.3 169 37.3
Haze_07821 Corylus avellana HOM05D004568 ORTHO05D005343 1.1e-11 75.1 63 61.9
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 2.4e-11 73.9 180 31.7
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 6.0e-10 69.3 104 40.4
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 1.0e-09 68.6 373 27.3
SEGI_26556 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 9.6e-08 62.0 145 31.0
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 4.7e-07 59.7 154 27.3
SGA_v2.0_scaffold14G06784 Striga asiatica HOM05D001314 ORTHO05D001165 6.2e-07 59.3 139 34.5
unitig_699.g19898 Utricularia gibba HOM05D004568 ORTHO05D005343 1.4e-06 58.2 122 32.8


User provided reference genes

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