Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI31G0909 Tripterygium wilfordii HOM05D006037 ORTHO05D007384 3.7e-282 974.2 471 100.0
CiPaw.05G240100 Carya illinoinensis HOM05D006037 ORTHO05D007384 7.4e-174 614.4 515 61.2
Ciclev10014910m.g Citrus clementina HOM05D006037 ORTHO05D007384 2.1e-173 612.8 517 59.2
TAR622G1007 Trochodendron aralioides HOM05D006037 ORTHO05D007384 2.6e-171 605.9 512 58.8
GSVIVG01011862001 Vitis vinifera HOM05D006037 ORTHO05D007384 3.2e-169 599.0 474 62.9
MD16G1039700 Malus domestica HOM05D006037 ORTHO05D007384 5.5e-169 598.2 534 55.8
Potri.010G122100 Populus trichocarpa HOM05D006037 ORTHO05D007384 2.1e-168 596.3 517 57.6
FvH4_4g26975 Fragaria vesca HOM05D006037 ORTHO05D007384 3.5e-168 595.5 485 58.4
Lj3C1012T17 Lonicera japonica HOM05D006037 ORTHO05D007384 3.5e-168 595.5 466 63.1
Sabra10G0092200 Salix brachista HOM05D006037 ORTHO05D007384 1.3e-167 593.6 517 57.4
Duzib248G1272 Durio zibethinus HOM05D006037 ORTHO05D007384 3.9e-167 592.0 512 58.6
RcHm_v2.0_Chr4g0434781 Rosa chinensis HOM05D006037 ORTHO05D007384 8.7e-167 590.9 472 60.0
Rhsim09G0105100 Rhododendron simsii HOM05D006037 ORTHO05D007384 9.7e-166 587.4 509 57.6
CSS0026176 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.4e-164 583.6 516 56.8
FAN12G3404 Fragaria x ananassa HOM05D006037 ORTHO05D007384 1.4e-164 583.6 502 56.2
Thecc.02G224800 Theobroma cacao HOM05D006037 ORTHO05D007384 4.1e-164 582.0 471 62.0
CSS0045711 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.5e-163 580.1 516 56.2
arahy.Tifrunner.gnm1.ann1.NA36PT Arachis hypogaea HOM05D006037 ORTHO05D007384 3.4e-163 578.9 512 55.7
Prupe.1G314400 Prunus persica HOM05D006037 ORTHO05D007384 4.5e-163 578.6 471 59.7
Haze_00627 Corylus avellana HOM05D006037 ORTHO05D007384 7.7e-163 577.8 545 56.3
arahy.Tifrunner.gnm1.ann1.CBB0MY Arachis hypogaea HOM05D006037 ORTHO05D007384 1.9e-161 573.2 512 55.7
FAN22G1751 Fragaria x ananassa HOM05D006037 ORTHO05D007384 4.2e-161 572.0 553 52.1
Gorai.005G192200 Gossypium raimondii HOM05D006037 ORTHO05D007384 1.2e-160 570.5 512 57.8
MD13G1039000 Malus domestica HOM05D006037 ORTHO05D007384 3.6e-160 568.9 463 59.6
Medtr1g110300 Medicago truncatula HOM05D006037 ORTHO05D007384 7.9e-160 567.8 513 55.2
Manes.14G105200 Manihot esculenta HOM05D006037 ORTHO05D007384 1.4e-159 567.0 474 59.7
Nn3g17908 Nelumbo nucifera HOM05D006037 ORTHO05D007384 5.1e-159 565.1 511 54.4
Lalb_Chr06g0165941 Lupinus albus HOM05D006037 ORTHO05D007384 2.2e-157 559.7 475 58.1
PSO017G5347 Papaver somniferum HOM05D006037 ORTHO05D007384 2.2e-157 559.7 526 54.9
Atru.chr11.165 Acer truncatum HOM05D006037 ORTHO05D007384 3.7e-157 558.9 475 59.4
PGR102G0142 Punica granatum HOM05D006037 ORTHO05D007384 8.2e-157 557.8 513 54.4
Potri.010G122000 Populus trichocarpa HOM05D006037 ORTHO05D007384 1.1e-156 557.4 475 60.0
COL.COLO4_38215 Corchorus olitorius HOM05D006037 ORTHO05D007384 2.4e-156 556.2 464 60.1
Sabra10G0092100 Salix brachista HOM05D006037 ORTHO05D007384 9.1e-156 554.3 468 59.4
Psat6g225720 Pisum sativum HOM05D006037 ORTHO05D007384 1.2e-155 553.9 474 57.4
Cc11_g09830 Coffea canephora HOM05D006037 ORTHO05D007384 4.5e-155 552.0 520 53.5
CANSAT01G2894 Cannabis sativa HOM05D006037 ORTHO05D007384 2.9e-154 549.3 514 53.9
PSO478G0980 Papaver somniferum HOM05D006037 ORTHO05D007384 8.5e-154 547.7 526 54.2
DCAR_007255 Daucus carota HOM05D006037 ORTHO05D007384 1.2e-152 543.9 514 53.5
Eucgr.B02995 Eucalyptus grandis HOM05D006037 ORTHO05D007384 1.2e-152 543.9 476 57.6
Aqoxy3G00235 Aquilegia oxysepala HOM05D006037 ORTHO05D007384 3.6e-152 542.3 509 54.0
Gohir.A03G147800 Gossypium hirsutum HOM05D006037 ORTHO05D007384 6.1e-152 541.6 471 58.8
Gohir.D02G171000 Gossypium hirsutum HOM05D006037 ORTHO05D007384 6.1e-152 541.6 471 59.0
TPR.G4859 Trifolium pratense HOM05D006037 ORTHO05D007384 7.9e-152 541.2 473 55.8
THA.LOC104821921 Tarenaya hassleriana HOM05D006037 ORTHO05D007384 3.9e-151 538.9 511 53.4
Glyma.20G118000 Glycine max HOM05D006037 ORTHO05D007384 1.1e-150 537.3 477 56.2
vmacro10580 Vaccinium macrocarpon HOM05D006037 ORTHO05D007384 2.0e-150 536.6 585 49.2
Lj5g0002773 Lotus japonicus HOM05D006037 ORTHO05D007384 9.7e-150 534.3 474 55.9
Cpa.g.sc65.52 Carica papaya HOM05D006037 ORTHO05D007384 2.8e-149 532.7 472 56.1
Actinidia14911 Actinidia chinensis HOM05D006037 ORTHO05D007384 3.1e-148 529.3 516 53.5
MBI09_g07743_MAGBIO Magnolia biondii HOM05D006037 ORTHO05D007384 5.0e-146 521.9 523 50.9
Migut.L01043 Erythranthe guttata HOM05D006037 ORTHO05D007384 6.5e-146 521.5 458 57.2
Lsat_1_v5_gn_3_57741 Lactuca sativa HOM05D006037 ORTHO05D007384 3.2e-145 519.2 527 48.8
Phvul.007G029700 Phaseolus vulgaris HOM05D006037 ORTHO05D007384 4.2e-145 518.8 477 53.2
Sopen05g004860 Solanum pennellii HOM05D006037 ORTHO05D007384 5.5e-145 518.5 511 52.6
VMungo0720G2449 Vigna mungo HOM05D006037 ORTHO05D007384 2.3e-143 513.1 476 54.2
Nitab4.5_0001616g0090 Nicotiana tabacum HOM05D006037 ORTHO05D007384 6.7e-143 511.5 567 49.4
SalBow8G4457 Salvia bowleyana HOM05D006037 ORTHO05D007384 7.4e-142 508.1 509 53.6
Aa31LG7G9120 Aethionema arabicum HOM05D006037 ORTHO05D007384 2.2e-141 506.5 515 51.7
ECA246G3707 Erigeron canadensis HOM05D006037 ORTHO05D007384 2.2e-141 506.5 515 49.7
Nitab4.5_0005528g0030 Nicotiana tabacum HOM05D006037 ORTHO05D007384 2.2e-141 506.5 566 49.5
SalBow8G2496 Salvia bowleyana HOM05D006037 ORTHO05D007384 8.2e-141 504.6 509 53.4
Thhalv10007371m.g Eutrema salsugineum HOM05D006037 ORTHO05D007384 1.1e-140 504.2 510 52.2
SGA_v2.0_scaffold38G14964 Striga asiatica HOM05D006037 ORTHO05D000229 2.4e-140 503.1 507 51.5
CAN.G610.57 Capsicum annuum HOM05D006037 ORTHO05D007384 3.1e-140 502.7 485 52.8
EL10Ac6g14338 Beta vulgaris HOM05D006037 ORTHO05D007384 4.1e-140 502.3 515 50.1
AL1G39950 Arabidopsis lyrata HOM05D006037 ORTHO05D007384 5.3e-140 501.9 509 52.1
TAR622G1402 Trochodendron aralioides HOM05D006037 ORTHO05D007384 9.1e-140 501.1 426 58.0
MSTRG.7652 Avicennia marina HOM05D006037 ORTHO05D007384 5.9e-139 498.4 470 54.0
Solyc05g009140.3 Solanum lycopersicum HOM05D006037 ORTHO05D007384 7.7e-139 498.0 473 53.1
HanXRQChr17g0551931 Helianthus annuus HOM05D006037 ORTHO05D007384 6.5e-138 495.0 476 52.7
C05p25140 Brassica napus HOM05D006037 ORTHO05D007384 2.5e-137 493.0 515 50.1
Ca_11141_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 3.2e-137 492.7 491 51.3
Ca_11146_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 3.2e-137 492.7 491 51.3
AT1G25375 Arabidopsis thaliana HOM05D006037 ORTHO05D007384 2.7e-136 489.6 509 50.7
Carub.0001s2514 Capsella rubella HOM05D006037 ORTHO05D007384 1.0e-135 487.6 515 50.7
BcaC05g26674 Brassica carinata HOM05D006037 ORTHO05D007384 1.8e-135 486.9 515 49.5
A09p39240 Brassica napus HOM05D006037 ORTHO05D007384 2.3e-135 486.5 515 50.1
BraA09t39423Z Brassica rapa HOM05D006037 ORTHO05D007384 2.3e-135 486.5 515 50.1
BolC5t31246H Brassica oleracea HOM05D006037 ORTHO05D007384 3.0e-135 486.1 515 49.5
Peaxi162Scf00753g00122 Petunia axillaris HOM05D006037 ORTHO05D007384 7.5e-134 481.5 464 52.8
AUR62002836 Chenopodium quinoa HOM05D006037 ORTHO05D007384 3.7e-133 479.2 518 50.0
AUR62037301 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.8e-132 476.9 631 43.1
AUR62037303 Chenopodium quinoa HOM05D006037 ORTHO05D007384 5.3e-132 475.3 468 51.9
AUR62002838 Chenopodium quinoa HOM05D006037 ORTHO05D007384 2.0e-131 473.4 468 51.1
Dinv21054 Davidia involucrata HOM05D006037 ORTHO05D007384 9.8e-126 454.5 329 65.3
BcaC05g26470 Brassica carinata HOM05D006037 ORTHO05D007384 2.4e-124 449.9 510 47.5
CDE12G0065 Ceratophyllum demersum HOM05D006037 ORTHO05D007384 1.6e-123 447.2 543 43.3
Zm00001eb125200 Zea mays HOM05D006037 ORTHO05D007384 7.7e-123 444.9 524 43.7
ATR1125G090 Amborella trichopoda HOM05D006037 ORTHO05D007384 3.8e-122 442.6 478 47.1
Aa31LG7G9130 Aethionema arabicum HOM05D006037 ORTHO05D007384 1.9e-121 440.3 493 46.0
PGSC0003DMG401014554 Solanum tuberosum HOM05D006037 ORTHO05D007384 1.6e-120 437.2 353 58.6
unitig_747.g21203 Utricularia gibba HOM05D006037 ORTHO05D007384 3.6e-120 436.0 523 46.7
QL01p040434 Quercus lobata HOM05D006037 ORTHO05D007384 5.4e-116 422.2 302 67.2
Os01g0133500 Oryza sativa ssp. japonica HOM05D006037 ORTHO05D007384 2.7e-115 419.9 520 42.1
CARHR026110 Cardamine hirsuta HOM05D006037 ORTHO05D007384 1.0e-111 407.9 355 57.2
FAN07G1837 Fragaria x ananassa HOM05D006037 ORTHO05D007384 2.3e-106 390.2 293 61.1
Sc11g0003550 Simmondsia chinensis HOM05D006037 ORTHO05D007384 1.6e-104 384.0 374 52.9
Mapoly0042s0034 Marchantia polymorpha HOM05D006037 ORTHO05D007384 1.4e-79 301.2 540 33.3
Ah.02g127690 Amaranthus hybridus HOM05D006037 ORTHO05D007384 1.7e-77 294.3 466 38.0
Pp3c15_25940 Physcomitrium patens HOM05D006037 ORTHO05D007384 2.2e-77 293.9 489 33.3
AagrBONN_evm.TU.Sc2ySwM_117.146 Anthoceros agrestis HOM05D006037 ORTHO05D007384 5.6e-73 279.3 495 36.2
QL02p008150 Quercus lobata HOM05D006037 ORTHO05D007384 1.5e-62 244.6 203 59.6
RcHm_v2.0_Chr5g0042931 Rosa chinensis HOM05D006037 ORTHO05D007384 1.3e-61 241.5 249 51.4
RcHm_v2.0_Chr7g0243441 Rosa chinensis HOM05D006037 ORTHO05D007384 8.4e-61 238.8 249 51.0
RcHm_v2.0_Chr6g0261541 Rosa chinensis HOM05D006037 ORTHO05D007384 4.0e-55 219.9 236 49.6
SMO164G0020 Selaginella moellendorffii HOM05D006037 ORTHO05D007384 4.0e-55 219.9 298 39.3
HPP92_008271 Vanilla planifolia HOM05D006037 ORTHO05D007384 6.9e-55 219.2 168 57.7
BcaC05g26471 Brassica carinata HOM05D006037 ORTHO05D007384 1.3e-48 198.4 244 46.7
QL01p040421 Quercus lobata HOM05D006037 ORTHO05D007384 6.1e-43 179.5 314 38.5
Hma1.2p1_1024F.1_g249230 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 3.4e-38 163.7 350 32.6
CBR_g162 Chara braunii HOM05D006037 ORTHO05D007384 3.8e-37 160.2 302 33.4
QL02p008285 Quercus lobata HOM05D000178 ORTHO05D007384 2.1e-27 127.9 151 49.0
QL02p008246 Quercus lobata HOM05D006037 ORTHO05D007384 3.1e-23 114.0 92 60.9
Hma1.2p1_1024F.1_g249220 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 1.2e-19 102.1 57 84.2
CSS0004694 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 6.8e-18 96.3 53 81.1
SEGI_35277 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 6.8e-18 96.3 99 47.5
SEGI_36031 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 2.0e-17 94.7 118 42.4
HPP92_008272 Vanilla planifolia HOM05D006037 ORTHO05D007384 2.0e-17 94.7 100 46.0
RcHm_v2.0_Chr2g0108931 Rosa chinensis HOM05D006037 ORTHO05D007384 4.4e-17 93.6 75 57.3
CSS0019302 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 8.3e-16 89.4 53 77.4
Oeu054976.1 Olea europaea HOM05D006037 ORTHO05D007384 1.8e-15 88.2 58 67.2
CSS0027478 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 5.4e-15 86.7 53 73.6
CSS0028236 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 5.4e-15 86.7 53 73.6
CSS0047987 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 5.4e-15 86.7 53 77.4
SEGI_25624 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 8.0e-11 72.8 135 31.9
Lsat_1_v5_gn_7_98681 Lactuca sativa HOM05D006037 ORTHO05D007384 1.5e-09 68.6 58 56.9
Ca_29313_v3 Cicer arietinum L. HOM05D002042 ORTHO05D008431 8.3e-08 62.8 104 32.7
CSS0043972 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.6e-06 58.5 53 54.7


User provided reference genes

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