Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 6.2e-93 344.7 270 100.0
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 8.8e-55 218.0 271 66.8
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 7.5e-38 161.8 251 57.4
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 5.6e-33 145.6 289 45.0
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 2.3e-31 140.2 287 50.9
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 5.2e-31 139.0 211 61.1
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 6.8e-31 138.7 215 50.7
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 2.9e-29 133.3 161 59.0
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 1.4e-28 131.0 285 47.7
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 1.2e-27 127.9 205 57.1
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 1.6e-27 127.5 270 58.5
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 4.6e-27 125.9 269 59.5
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 6.0e-27 125.6 217 55.8
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 7.8e-27 125.2 290 42.4
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 5.0e-26 122.5 221 47.5
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 6.6e-26 122.1 218 58.3
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 6.2e-24 115.5 98 75.5
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 6.8e-23 112.1 201 57.7
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 1.2e-22 111.3 197 46.7
Hma1.2p1_0930F.1_g238020 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 2.0e-22 110.5 176 71.0
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 3.4e-22 109.8 290 44.1
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 4.4e-22 109.4 199 57.3
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 9.8e-22 108.2 191 60.2
FAN28G2623 Fragaria x ananassa HOM05D003347 ORTHO05D003821 6.4e-21 105.5 184 53.3
Nitab4.5_0000496g0140 Nicotiana tabacum HOM05D003347 ORTHO05D003821 8.3e-21 105.1 115 65.2
Oeu037839.1 Olea europaea HOM05D003347 ORTHO05D003821 8.3e-21 105.1 248 52.8
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 1.9e-20 104.0 103 64.1
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 2.4e-20 103.6 234 48.3
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 3.2e-20 103.2 116 61.2
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 3.2e-20 103.2 206 47.1
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 4.1e-20 102.8 281 49.1
COL.COLO4_12116 Corchorus olitorius HOM05D012218 ORTHO05D003821 5.4e-20 102.4 190 52.1
Lj4A831G75 Lonicera japonica HOM05D003347 ORTHO05D003821 5.4e-20 102.4 77 79.2
Sed0017913 Sechium edule HOM05D003347 ORTHO05D003821 7.1e-20 102.1 108 67.6
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 9.2e-20 101.7 109 59.6
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 1.6e-19 100.9 203 43.8
TPR.G28695 Trifolium pratense HOM05D003347 ORTHO05D003821 1.6e-19 100.9 150 64.0
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 2.1e-19 100.5 93 66.7
Sc09g0002030 Simmondsia chinensis HOM05D003347 ORTHO05D003821 2.1e-19 100.5 161 55.9
HanXRQChr01g0017031 Helianthus annuus HOM05D003347 ORTHO05D003821 4.6e-19 99.4 205 63.9
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 1.0e-18 98.2 103 58.3
Zm00001eb197610 Zea mays HOM05D003347 ORTHO05D003821 1.0e-18 98.2 166 52.4
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 2.3e-18 97.1 160 52.5
Psat5g058080 Pisum sativum HOM05D003347 ORTHO05D003821 2.3e-18 97.1 121 57.0
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 3.0e-18 96.7 100 62.0
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 3.0e-18 96.7 191 63.9
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 3.0e-18 96.7 107 60.7
Lj1g0014274 Lotus japonicus HOM05D003347 ORTHO05D003821 3.9e-18 96.3 77 76.6
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 8.6e-18 95.1 193 55.4
Atru.chr4.1125 Acer truncatum HOM05D003347 ORTHO05D003821 1.1e-17 94.7 194 54.1
Cpa.g.sc37.62 Carica papaya HOM05D003347 ORTHO05D003821 1.1e-17 94.7 74 73.0
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 1.1e-17 94.7 86 73.3
GSVIVG01022926001 Vitis vinifera HOM05D003347 ORTHO05D003821 1.5e-17 94.4 203 42.4
Lalb_Chr11g0068781 Lupinus albus HOM05D003347 ORTHO05D003821 2.5e-17 93.6 84 72.6
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 7.3e-17 92.0 207 44.0
vmacro01761 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 7.3e-17 92.0 132 49.2
MSTRG.23472 Avicennia marina HOM05D003347 ORTHO05D003821 9.5e-17 91.7 258 47.7
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 9.5e-17 91.7 73 74.0
TWI59G0889 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 9.5e-17 91.7 96 64.6
VMungo1309G3119 Vigna mungo HOM05D003347 ORTHO05D003821 1.2e-16 91.3 81 70.4
MELO3C014381.2 Cucumis melo HOM05D003347 ORTHO05D003821 1.6e-16 90.9 208 49.5
Potri.019G001900 Populus trichocarpa HOM05D003347 ORTHO05D003821 2.1e-16 90.5 175 45.7
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 2.1e-16 90.5 201 49.8
Nn1g08766 Nelumbo nucifera HOM05D003347 ORTHO05D003821 2.8e-16 90.1 207 51.2
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 2.8e-16 90.1 213 54.9
EL10Ac4g09689 Beta vulgaris HOM05D003347 ORTHO05D003821 4.7e-16 89.4 344 44.8
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 4.7e-16 89.4 278 50.7
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 6.2e-16 89.0 203 42.4
CiPaw.05G044400 Carya illinoinensis HOM05D003347 ORTHO05D003821 6.2e-16 89.0 277 45.5
Migut.H00863 Erythranthe guttata HOM05D003347 ORTHO05D003821 6.2e-16 89.0 239 52.3
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 8.1e-16 88.6 217 42.4
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 8.1e-16 88.6 208 50.0
Lsat_1_v5_gn_9_118960 Lactuca sativa HOM05D003347 ORTHO05D003821 1.1e-15 88.2 85 64.7
SGA_v2.0_scaffold189G40392 Striga asiatica HOM05D000087 ORTHO05D000793 1.1e-15 88.2 186 50.0
Oeu008894.1 Olea europaea HOM05D003347 ORTHO05D003821 1.4e-15 87.8 89 62.9
Oeu008895.1 Olea europaea HOM05D003347 ORTHO05D003821 1.4e-15 87.8 89 62.9
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 1.4e-15 87.8 105 59.0
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 1.8e-15 87.4 272 52.6
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 3.1e-15 86.7 233 41.6
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 3.1e-15 86.7 211 50.7
Glyma.08G186200 Glycine max HOM05D003347 ORTHO05D003821 5.2e-15 85.9 182 50.0
Lsat_1_v5_gn_1_80721 Lactuca sativa HOM05D002427 ORTHO05D002818 5.2e-15 85.9 150 48.0
THA.LOC104823661 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 5.2e-15 85.9 199 46.7
CsaV3_6G037360 Cucumis sativus L. HOM05D003347 ORTHO05D003821 6.8e-15 85.5 208 48.6
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 8.9e-15 85.1 209 42.1
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 1.2e-14 84.7 189 45.0
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 1.5e-14 84.3 192 61.5
RcHm_v2.0_Chr2g0123211 Rosa chinensis HOM05D003347 ORTHO05D003821 2.0e-14 84.0 163 51.5
Oeu033124.1 Olea europaea HOM05D002729 ORTHO05D003163 2.6e-14 83.6 79 65.8
Rhsim10G0131200 Rhododendron simsii HOM05D003347 ORTHO05D003821 3.4e-14 83.2 283 44.9
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 5.8e-14 82.4 101 56.4
Nitab4.5_0013117g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 7.6e-14 82.0 84 65.5
Dinv05136 Davidia involucrata HOM05D000040 ORTHO05D000267 2.2e-13 80.5 261 48.3
SMO163G0068 Selaginella moellendorffii HOM05D003347 ORTHO05D003821 2.9e-13 80.1 165 41.8
unitig_60.g25508 Utricularia gibba HOM05D003347 ORTHO05D003821 2.9e-13 80.1 147 49.7
Psat5g058160 Pisum sativum HOM05D003347 ORTHO05D003821 3.7e-13 79.7 112 50.9
Zm00001eb113690 Zea mays HOM05D003347 ORTHO05D003821 3.7e-13 79.7 187 44.4
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 6.4e-13 79.0 161 46.6
Psat1g221480 Pisum sativum HOM05D003347 ORTHO05D003821 6.4e-13 79.0 236 47.0
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 1.1e-12 78.2 205 50.2
Hma1.2p1_1197F.1_g266100 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 1.1e-12 78.2 74 63.5
Gorai.008G042400 Gossypium raimondii HOM05D003347 ORTHO05D003821 1.4e-12 77.8 279 37.3
FAN19G3034 Fragaria x ananassa HOM05D003347 ORTHO05D003821 3.2e-12 76.6 73 67.1
MD15G1137800 Malus domestica HOM05D003347 ORTHO05D003821 7.1e-12 75.5 188 42.6
arahy.Tifrunner.gnm1.ann1.AG1RTL Arachis hypogaea HOM05D003347 ORTHO05D003821 9.2e-12 75.1 116 54.3
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.6e-11 74.3 275 48.0
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 2.1e-11 73.9 115 50.4
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 2.1e-11 73.9 238 38.2
Prupe.4G280500 Prunus persica HOM05D003347 ORTHO05D003821 2.1e-11 73.9 188 46.3
Actinidia26147 Actinidia chinensis HOM05D003347 ORTHO05D003821 3.5e-11 73.2 179 38.5
EL10Ac6g14071 Beta vulgaris HOM05D003347 ORTHO05D003821 3.5e-11 73.2 108 50.9
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 3.5e-11 73.2 272 48.2
Potri.001G306100 Populus trichocarpa HOM05D003347 ORTHO05D003821 3.5e-11 73.2 82 64.6
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 3.5e-11 73.2 205 36.6
Pp3c15_6590 Physcomitrium patens HOM05D003347 ORTHO05D003821 7.8e-11 72.0 87 54.0
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 1.3e-10 71.2 92 54.3
Sabra19G0015000 Salix brachista HOM05D003347 ORTHO05D003821 2.3e-10 70.5 52 76.9
Duzib248G0125 Durio zibethinus HOM05D003347 ORTHO05D003821 3.9e-10 69.7 192 38.5
Hund12985 Selenicereus undatus HOM05D003347 ORTHO05D003821 5.1e-10 69.3 101 51.5
Gohir.A12G031700 Gossypium hirsutum HOM05D003347 ORTHO05D003821 6.6e-10 68.9 204 35.8
QL11p018508 Quercus lobata HOM05D003347 ORTHO05D003821 6.6e-10 68.9 75 58.7
Glyma.15G046600 Glycine max HOM05D003347 ORTHO05D003821 1.5e-09 67.8 184 50.0
Gohir.D09G005500 Gossypium hirsutum HOM05D003347 ORTHO05D003821 2.5e-09 67.0 272 46.3
Thhalv10014512m.g Eutrema salsugineum HOM05D012923 ORTHO05D014747 3.3e-09 66.6 146 51.4
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 3.3e-09 66.6 279 37.6
Os10g0214400 Oryza sativa ssp. japonica HOM05D003347 ORTHO05D003821 3.3e-09 66.6 170 51.2
Thhalv10008376m.g Eutrema salsugineum HOM05D003347 ORTHO05D003821 5.6e-09 65.9 112 49.1
ECA236G0662 Erigeron canadensis HOM05D003347 ORTHO05D003821 9.6e-09 65.1 285 46.7
arahy.Tifrunner.gnm1.ann1.CXB9HG Arachis hypogaea HOM05D003347 ORTHO05D003821 1.2e-08 64.7 133 44.4
Potri.001G211000 Populus trichocarpa HOM05D003347 ORTHO05D003821 1.2e-08 64.7 189 38.1
Sopen05g034850 Solanum pennellii HOM05D003347 ORTHO05D003821 1.2e-08 64.7 186 51.1
Aa31LG11G7390 Aethionema arabicum HOM05D012923 ORTHO05D014747 1.6e-08 64.3 209 45.0
CAN.G1577.23 Capsicum annuum HOM05D003347 ORTHO05D003821 1.6e-08 64.3 319 38.6
Manes.07G015700 Manihot esculenta HOM05D003347 ORTHO05D003821 2.8e-08 63.5 105 49.5
SEGI_15810 Sequoiadendron giganteum HOM05D003347 ORTHO05D003821 2.8e-08 63.5 90 50.0
ECA248G0339 Erigeron canadensis HOM05D003347 ORTHO05D003821 4.7e-08 62.8 63 61.9
AUR62000566 Chenopodium quinoa HOM05D003347 ORTHO05D003821 6.2e-08 62.4 112 56.2
ClCG09G014210 Citrullus lanatus HOM05D003347 ORTHO05D003821 8.1e-08 62.0 73 56.2
Manes.12G147600 Manihot esculenta HOM05D003347 ORTHO05D003821 8.1e-08 62.0 178 56.7
CARHR051920 Cardamine hirsuta HOM05D003347 ORTHO05D003821 1.8e-07 60.8 150 41.3
A06p07670 Brassica napus HOM05D003347 ORTHO05D003821 2.4e-07 60.5 186 37.6
BraA06t23968Z Brassica rapa HOM05D003347 ORTHO05D003821 2.4e-07 60.5 186 37.6
Lalb_Chr18g0060901 Lupinus albus HOM05D003347 ORTHO05D003821 2.4e-07 60.5 203 45.3
Peaxi162Scf00011g00421 Petunia axillaris HOM05D003347 ORTHO05D003821 2.4e-07 60.5 81 49.4
BolC5t29665H Brassica oleracea HOM05D003347 ORTHO05D003821 3.1e-07 60.1 123 44.7
Ca_17010_v3 Cicer arietinum L. HOM05D003347 ORTHO05D003821 3.1e-07 60.1 151 45.0
Solyc01g104160.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 3.1e-07 60.1 48 64.6
DCAR_029250 Daucus carota HOM05D003347 ORTHO05D003821 6.8e-07 58.9 99 46.5
arahy.Tifrunner.gnm1.ann1.X7GISI Arachis hypogaea HOM05D003347 ORTHO05D003821 8.9e-07 58.5 158 46.8
Sabra01G0163000 Salix brachista HOM05D003347 ORTHO05D003821 8.9e-07 58.5 59 61.0
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 2.0e-06 57.4 71 53.5
MD08G1229400 Malus domestica HOM05D003347 ORTHO05D003821 2.6e-06 57.0 75 50.7
SalBow5G2549 Salvia bowleyana HOM05D003347 ORTHO05D003821 3.4e-06 56.6 182 55.5


User provided reference genes

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