Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 4.3e-275 950.7 471 100.0
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 3.4e-227 791.6 458 84.3
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 1.8e-225 785.8 460 83.0
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 5.0e-223 777.7 460 82.2
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 8.6e-223 776.9 462 81.2
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 7.3e-222 773.9 461 82.2
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 4.7e-221 771.2 455 80.4
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 1.2e-219 766.5 462 79.9
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 1.5e-219 766.1 456 80.3
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 5.8e-219 764.2 462 79.4
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 2.2e-218 762.3 455 82.4
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 4.9e-218 761.1 458 80.1
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 5.4e-217 757.7 465 79.8
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.0e-215 753.4 455 81.3
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 1.0e-215 753.4 455 81.3
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 1.7e-215 752.7 474 78.1
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 1.1e-214 750.0 432 82.4
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 3.3e-214 748.4 461 79.0
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 1.2e-213 746.5 466 79.2
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.8e-212 742.7 466 77.9
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 5.2e-212 741.1 437 81.0
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 1.2e-211 740.0 435 81.4
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 2.0e-211 739.2 461 79.0
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 2.0e-211 739.2 461 78.1
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 9.9e-211 736.9 425 82.1
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 1.7e-210 736.1 465 77.8
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 2.2e-210 735.7 468 75.4
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 3.7e-210 734.9 462 78.4
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 4.9e-210 734.6 433 81.3
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 8.3e-210 733.8 458 77.7
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 8.3e-210 733.8 451 80.0
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 1.1e-209 733.4 468 76.5
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 1.9e-209 732.6 443 78.3
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 5.4e-209 731.1 445 77.5
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 2.1e-208 729.2 459 78.4
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 2.7e-208 728.8 443 77.9
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 4.6e-208 728.0 470 76.6
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 6.0e-208 727.6 464 75.2
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 7.8e-208 727.2 457 76.6
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 7.8e-208 727.2 453 76.6
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 7.8e-208 727.2 458 76.9
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 1.0e-207 726.9 443 79.2
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.3e-207 726.5 466 76.2
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 1.7e-207 726.1 464 75.4
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 2.3e-207 725.7 426 82.4
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 8.6e-207 723.8 461 76.4
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 8.6e-207 723.8 442 77.1
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 8.6e-207 723.8 442 76.9
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 1.5e-206 723.0 446 78.9
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 7.3e-206 720.7 457 76.4
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 3.6e-205 718.4 493 74.2
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 4.7e-205 718.0 456 77.0
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 4.7e-205 718.0 465 74.6
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 1.1e-204 716.8 450 76.2
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 1.4e-204 716.5 438 77.9
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 3.1e-204 715.3 438 78.1
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 4.0e-204 714.9 438 77.6
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 1.5e-203 713.0 426 78.2
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 2.0e-203 712.6 425 79.1
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 2.6e-203 712.2 447 77.2
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 3.4e-203 711.8 458 75.1
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 4.4e-203 711.4 465 73.3
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 7.6e-203 710.7 433 79.2
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 1.3e-202 709.9 450 77.1
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 2.9e-202 708.8 444 76.4
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 4.9e-202 708.0 445 74.4
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 8.4e-202 707.2 430 77.7
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 1.1e-201 706.8 427 78.9
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 1.4e-201 706.4 433 78.3
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.9e-201 706.1 448 74.6
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 2.4e-201 705.7 425 78.6
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 4.1e-201 704.9 453 74.4
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 7.1e-201 704.1 425 78.6
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 7.1e-201 704.1 425 78.6
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 7.1e-201 704.1 436 77.3
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 9.2e-201 703.7 468 73.3
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 1.6e-200 703.0 424 79.5
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 2.1e-200 702.6 428 78.3
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 3.5e-200 701.8 450 75.6
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 3.5e-200 701.8 430 77.9
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 4.6e-200 701.4 450 75.6
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 7.8e-200 700.7 443 76.1
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 1.0e-199 700.3 427 78.2
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 1.0e-199 700.3 427 78.2
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.0e-199 698.7 425 77.6
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.0e-199 698.7 425 77.6
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 3.0e-199 698.7 446 76.9
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 3.0e-199 698.7 443 76.1
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 3.9e-199 698.4 422 78.7
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 5.1e-199 698.0 425 77.9
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 6.6e-199 697.6 446 75.8
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 6.6e-199 697.6 427 78.7
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 1.1e-198 696.8 444 75.2
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.9e-198 696.0 469 72.5
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 2.5e-198 695.7 441 76.0
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 3.3e-198 695.3 465 74.0
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 4.3e-198 694.9 466 72.7
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 9.6e-198 693.7 472 72.2
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 1.2e-197 693.3 440 74.3
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 1.2e-197 693.3 472 71.4
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.6e-197 693.0 425 77.6
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 2.1e-197 692.6 467 72.8
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 1.8e-196 689.5 425 76.9
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 1.8e-196 689.5 475 71.2
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 2.6e-195 685.6 467 71.9
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 2.6e-195 685.6 467 71.9
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 3.4e-195 685.3 446 73.1
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 7.6e-195 684.1 413 79.7
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 2.2e-194 682.6 440 74.3
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 2.9e-194 682.2 441 74.6
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 2.9e-194 682.2 441 74.1
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 4.9e-194 681.4 466 71.5
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 6.4e-194 681.0 433 75.3
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 1.1e-193 680.2 446 73.1
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 1.1e-193 680.2 469 72.7
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.4e-193 679.9 441 72.3
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 7.1e-193 677.6 429 76.5
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 2.1e-192 676.0 436 74.8
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 2.7e-192 675.6 446 72.6
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 1.3e-191 673.3 436 73.6
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.7e-191 672.9 409 77.8
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 6.6e-191 671.0 447 74.0
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.1e-190 670.2 438 73.5
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 1.9e-190 669.5 430 75.8
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 4.3e-190 668.3 432 74.8
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 3.6e-189 665.2 422 75.6
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 1.1e-188 663.7 429 72.7
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 1.4e-188 663.3 401 78.8
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 4.0e-188 661.8 445 72.8
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 4.0e-188 661.8 405 77.8
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 6.9e-188 661.0 432 71.5
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 1.5e-187 659.8 385 81.3
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 7.6e-187 657.5 426 73.7
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.9e-185 652.9 449 73.3
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 1.1e-182 643.7 463 67.4
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 1.3e-181 640.2 376 82.4
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 2.8e-181 639.0 388 78.6
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.1e-180 637.1 469 69.5
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 2.4e-180 636.0 391 77.7
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 4.9e-178 628.2 364 80.5
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 1.5e-174 616.7 445 67.0
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 2.5e-174 615.9 409 72.4
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 1.2e-163 580.5 446 65.9
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 3.4e-163 578.9 387 71.8
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.3e-158 562.4 423 65.2
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 2.9e-154 549.3 469 63.3
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.3e-151 539.7 427 62.3
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 1.5e-147 526.9 423 61.7
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 9.1e-140 501.1 419 59.4
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 3.5e-139 499.2 468 56.6
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 1.4e-124 450.7 288 75.3
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 2.3e-122 443.4 322 67.4
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.0e-110 403.7 273 71.1
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 3.2e-108 396.4 233 80.3
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 9.2e-108 394.8 431 47.8
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 3.4e-102 376.3 232 76.3
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 4.1e-100 369.4 464 42.7
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 9.2e-100 368.2 422 46.9
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 1.3e-90 337.8 381 45.4
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.3e-77 294.7 272 60.7
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 4.8e-72 276.2 162 83.3
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 2.1e-59 234.2 154 76.6
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 6.9e-47 192.6 113 81.4
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 8.5e-45 185.7 126 68.3
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 2.5e-41 174.1 464 29.5
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.7e-40 171.4 100 79.0
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 2.6e-33 147.5 441 28.8
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 1.7e-24 118.2 75 76.0
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 6.3e-24 116.3 104 59.6
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 6.3e-16 89.7 57 70.2
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 2.9e-13 80.9 79 53.2
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 2.8e-08 64.3 227 26.9
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 4.9e-08 63.5 43 65.1
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 1.1e-07 62.4 43 62.8
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 1.8e-07 61.6 147 30.6
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 1.8e-07 61.6 195 25.6
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 4.1e-07 60.5 198 25.8
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 4.1e-07 60.5 148 30.4
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 1.2e-06 58.9 199 26.6
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 4.5e-06 57.0 146 28.1


User provided reference genes

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