Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI18G0944 Tripterygium wilfordii HOM05D006799 ORTHO05D008391 1.0e-105 386.7 195 100.0
Potri.002G246000 Populus trichocarpa HOM05D006799 ORTHO05D008391 1.5e-75 286.6 190 75.3
Sabra02G0187300 Salix brachista HOM05D006799 ORTHO05D008391 1.8e-73 279.6 192 73.4
Manes.13G049500 Manihot esculenta HOM05D006799 ORTHO05D008391 3.0e-73 278.9 183 76.0
Hma1.2p1_0226F.1_g095380 Hydrangea macrophylla HOM05D006799 ORTHO05D008391 5.2e-73 278.1 203 70.4
Dinv12648 Davidia involucrata HOM05D006799 ORTHO05D008391 1.8e-70 269.6 187 73.3
Haze_15251 Corylus avellana HOM05D006799 ORTHO05D008391 2.7e-69 265.8 194 70.6
Rhsim01G0253200 Rhododendron simsii HOM05D006799 ORTHO05D008391 2.7e-69 265.8 187 74.3
Thecc.01G219900 Theobroma cacao HOM05D006799 ORTHO05D008391 1.0e-68 263.8 184 73.4
TAR362G0955 Trochodendron aralioides HOM05D006799 ORTHO05D008391 2.9e-68 262.3 184 69.6
ClCG09G008610 Citrullus lanatus HOM05D006799 ORTHO05D008391 6.6e-68 261.2 183 67.8
CSS0002557 Camellia sinensis var. sinensis HOM05D006799 ORTHO05D008391 8.6e-68 260.8 198 66.7
CiPaw.02G023800 Carya illinoinensis HOM05D006799 ORTHO05D008391 1.1e-67 260.4 187 70.1
QL09p051225 Quercus lobata HOM05D006799 ORTHO05D008391 1.5e-67 260.0 187 69.5
Ciclev10022385m.g Citrus clementina HOM05D006799 ORTHO05D008391 2.5e-67 259.2 195 69.2
Actinidia23709 Actinidia chinensis HOM05D006799 ORTHO05D008391 4.3e-67 258.5 183 69.9
Atru.chr6.1426 Acer truncatum HOM05D006799 ORTHO05D008391 1.6e-66 256.5 186 71.0
CsaV3_7G026360 Cucumis sativus L. HOM05D006799 ORTHO05D008391 2.1e-66 256.1 186 67.2
GSVIVG01003251001 Vitis vinifera HOM05D006799 ORTHO05D008391 3.6e-66 255.4 175 71.4
Gorai.001G105200 Gossypium raimondii HOM05D006799 ORTHO05D008391 4.7e-66 255.0 195 68.7
Gohir.D07G097800 Gossypium hirsutum HOM05D006799 ORTHO05D008391 6.1e-66 254.6 195 68.7
CAN.G181.54 Capsicum annuum HOM05D006799 ORTHO05D008391 1.4e-65 253.4 180 69.4
Gohir.A07G093200 Gossypium hirsutum HOM05D006799 ORTHO05D008391 1.8e-65 253.1 195 67.7
PGR044G2699 Punica granatum HOM05D006799 ORTHO05D008391 2.3e-65 252.7 192 65.1
Cfa004160 Carpinus fangiana HOM05D006799 ORTHO05D008391 3.0e-65 252.3 218 62.4
Sopen06g002680 Solanum pennellii HOM05D006799 ORTHO05D008391 4.0e-65 251.9 181 69.1
Peaxi162Scf00068g02310 Petunia axillaris HOM05D006799 ORTHO05D008391 5.2e-65 251.5 197 67.0
vmacro14734 Vaccinium macrocarpon HOM05D006799 ORTHO05D008391 5.2e-65 251.5 232 59.1
Solyc06g007800.4 Solanum lycopersicum HOM05D006799 ORTHO05D008391 6.8e-65 251.1 181 69.1
Sc17g0002120 Simmondsia chinensis HOM05D006799 ORTHO05D008391 1.5e-64 250.0 190 68.4
COL.COLO4_15616 Corchorus olitorius HOM05D006799 ORTHO05D008391 2.0e-64 249.6 182 68.7
Nitab4.5_0002641g0110 Nicotiana tabacum HOM05D006799 ORTHO05D008391 2.0e-64 249.6 179 69.3
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 2.6e-64 249.2 194 63.9
Cpa.g.sc21.107 Carica papaya HOM05D006799 ORTHO05D008391 4.4e-64 248.4 180 68.9
Nitab4.5_0000045g0540 Nicotiana tabacum HOM05D006799 ORTHO05D008391 7.5e-64 247.7 180 69.4
MELO3C021082.2 Cucumis melo HOM05D006799 ORTHO05D008391 1.3e-63 246.9 195 62.6
FvH4_2g18530 Fragaria vesca HOM05D006799 ORTHO05D008391 1.3e-63 246.9 194 63.4
RcHm_v2.0_Chr6g0284091 Rosa chinensis HOM05D006799 ORTHO05D008391 1.3e-63 246.9 198 61.1
PGSC0003DMG400022033 Solanum tuberosum HOM05D006799 ORTHO05D008391 1.3e-63 246.9 181 67.4
Duzib138G1661 Durio zibethinus HOM05D006799 ORTHO05D008391 1.7e-63 246.5 182 72.0
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.7e-63 246.5 194 63.4
Sed0008494 Sechium edule HOM05D006799 ORTHO05D008391 1.7e-63 246.5 184 65.8
MD10G1159700 Malus domestica HOM05D006799 ORTHO05D008391 2.9e-63 245.7 193 63.7
Dinv19171 Davidia involucrata HOM05D006799 ORTHO05D008391 1.1e-62 243.8 163 75.5
SGA_v2.0_scaffold6G03220 Striga asiatica HOM05D006799 ORTHO05D008391 1.4e-62 243.4 194 64.4
Cc01_g16700 Coffea canephora HOM05D006799 ORTHO05D008391 2.4e-62 242.7 191 63.9
Prupe.8G198800 Prunus persica HOM05D006799 ORTHO05D008391 3.2e-62 242.3 190 64.7
MSTRG.17994 Avicennia marina HOM05D006799 ORTHO05D008391 4.1e-62 241.9 185 67.0
MD05G1171500 Malus domestica HOM05D006799 ORTHO05D008391 4.1e-62 241.9 193 62.7
Lj1C89G17 Lonicera japonica HOM05D006799 ORTHO05D008391 9.2e-62 240.7 171 69.0
Nitab4.5_0002616g0150 Nicotiana tabacum HOM05D006799 ORTHO05D008391 1.6e-61 240.0 216 58.8
Aqoxy5G00028 Aquilegia oxysepala HOM05D006799 ORTHO05D008391 2.0e-61 239.6 177 64.4
DCAR_012670 Daucus carota HOM05D006799 ORTHO05D008391 5.9e-61 238.0 182 65.4
CANSAT01G3095 Cannabis sativa HOM05D006799 ORTHO05D008391 1.0e-60 237.3 187 64.2
MBI11_g07417_MAGBIO Magnolia biondii HOM05D006799 ORTHO05D008391 3.9e-60 235.3 208 59.1
EL10Ac5g12475 Beta vulgaris HOM05D006799 ORTHO05D008391 5.6e-59 231.5 189 64.0
Eucgr.K02137 Eucalyptus grandis HOM05D006799 ORTHO05D008391 1.2e-58 230.3 178 66.3
Lsat_1_v5_gn_8_89340 Lactuca sativa HOM05D006799 ORTHO05D008391 1.6e-58 229.9 176 65.3
ECA236G1739 Erigeron canadensis HOM05D006799 ORTHO05D008391 2.8e-58 229.2 181 62.4
arahy.Tifrunner.gnm1.ann1.AR5NL3 Arachis hypogaea HOM05D006799 ORTHO05D008391 1.4e-57 226.9 200 58.0
SalBow3G4070 Salvia bowleyana HOM05D006799 ORTHO05D008391 1.4e-57 226.9 191 61.8
Glyma.17G151300 Glycine max HOM05D006799 ORTHO05D008391 4.0e-57 225.3 204 57.8
arahy.Tifrunner.gnm1.ann1.H272JM Arachis hypogaea HOM05D006799 ORTHO05D008391 6.8e-57 224.6 200 57.5
AUR62007023 Chenopodium quinoa HOM05D006799 ORTHO05D008391 6.8e-57 224.6 188 60.6
Hund05578 Selenicereus undatus HOM05D006799 ORTHO05D008391 8.9e-57 224.2 191 59.7
VMungo0331G1591 Vigna mungo HOM05D006799 ORTHO05D008391 8.9e-57 224.2 203 56.2
AUR62019885 Chenopodium quinoa HOM05D006799 ORTHO05D008391 1.2e-56 223.8 188 60.1
Lalb_Chr12g0209871 Lupinus albus HOM05D006799 ORTHO05D008391 4.4e-56 221.9 196 58.2
Migut.N00632 Erythranthe guttata HOM05D006799 ORTHO05D008391 7.5e-56 221.1 185 60.0
THA.LOC104804623 Tarenaya hassleriana HOM05D006799 ORTHO05D008391 9.8e-56 220.7 197 61.4
TPR.G11194 Trifolium pratense HOM05D006799 ORTHO05D008391 4.9e-55 218.4 188 57.4
Medtr8g012725 Medicago truncatula HOM05D006799 ORTHO05D008391 1.9e-54 216.5 176 59.7
Psat4g203520 Pisum sativum HOM05D006799 ORTHO05D008391 1.9e-54 216.5 197 55.8
Phvul.010G021800 Phaseolus vulgaris HOM05D006799 ORTHO05D008391 3.2e-54 215.7 202 56.4
Lj3g0009647 Lotus japonicus HOM05D006799 ORTHO05D008391 1.2e-53 213.8 208 55.3
unitig_0.g374 Utricularia gibba HOM05D006799 ORTHO05D008391 7.8e-53 211.1 171 60.2
HanXRQChr16g0500591 Helianthus annuus HOM05D006799 ORTHO05D008391 1.2e-50 203.8 179 62.6
Carub.0003s2545 Capsella rubella HOM05D006799 ORTHO05D008391 3.6e-50 202.2 186 56.5
CDE05G2155 Ceratophyllum demersum HOM05D006799 ORTHO05D008391 1.4e-49 200.3 184 54.3
Aa31LG9G5010 Aethionema arabicum HOM05D006799 ORTHO05D008391 8.9e-49 197.6 186 56.5
Os04g0376100 Oryza sativa ssp. japonica HOM05D006799 ORTHO05D008391 8.9e-49 197.6 191 50.3
CARHR101440 Cardamine hirsuta HOM05D006799 ORTHO05D008391 2.6e-48 196.1 186 54.3
PSO063G5306 Papaver somniferum HOM05D006799 ORTHO05D008391 5.8e-48 194.9 173 56.6
AL3G40810 Arabidopsis lyrata HOM05D006799 ORTHO05D008391 3.7e-47 192.2 183 55.7
Ca_23225_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 6.4e-47 191.4 164 56.7
AT3G25120 Arabidopsis thaliana HOM05D006799 ORTHO05D008391 1.4e-46 190.3 190 54.7
Thhalv10002682m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 1.4e-46 190.3 187 55.6
BcaC06g35782 Brassica carinata HOM05D006799 ORTHO05D008391 3.0e-44 182.6 193 51.8
A07p07240 Brassica napus HOM05D006799 ORTHO05D008391 3.0e-44 182.6 193 51.3
BraA07t28510Z Brassica rapa HOM05D006799 ORTHO05D008391 3.0e-44 182.6 193 52.3
BolC7t41559H Brassica oleracea HOM05D006799 ORTHO05D008391 7.3e-43 177.9 194 51.5
C07p10930 Brassica napus HOM05D006799 ORTHO05D008391 1.6e-42 176.8 194 51.0
Sp3g22710 Schrenkiella parvula HOM05D006799 ORTHO05D008391 1.6e-42 176.8 187 52.4
BcaB03g16157 Brassica carinata HOM05D006799 ORTHO05D008391 2.1e-42 176.4 191 53.4
Zm00001eb086040 Zea mays HOM05D006799 ORTHO05D008391 6.2e-42 174.9 162 53.1
BcaC02g09450 Brassica carinata HOM05D006799 ORTHO05D008391 1.4e-41 173.7 193 53.4
Ah.12g052960 Amaranthus hybridus HOM05D006799 ORTHO05D008391 1.8e-41 173.3 131 64.1
CARHR218390 Cardamine hirsuta HOM05D006799 ORTHO05D008391 2.4e-41 172.9 179 52.5
A04p08990 Brassica napus HOM05D006799 ORTHO05D008391 3.1e-41 172.6 191 52.9
BraA04t16594Z Brassica rapa HOM05D006799 ORTHO05D008391 3.1e-41 172.6 191 52.9
C04p42860 Brassica napus HOM05D006799 ORTHO05D008391 4.0e-41 172.2 193 53.4
BolC4t25853H Brassica oleracea HOM05D006799 ORTHO05D008391 2.0e-40 169.9 193 52.8
ATR0561G177 Amborella trichopoda HOM05D006799 ORTHO05D008391 2.6e-40 169.5 186 47.8
Sc17g0002130 Simmondsia chinensis HOM05D006799 ORTHO05D008391 6.0e-37 158.3 100 78.0
FAN27G1455 Fragaria x ananassa HOM05D006799 ORTHO05D008391 3.0e-36 156.0 127 60.6
BcaB06g26722 Brassica carinata HOM05D006799 ORTHO05D008391 3.9e-36 155.6 171 50.3
Peaxi162Scf00372g01214 Petunia axillaris HOM05D006799 ORTHO05D008391 1.1e-35 154.1 121 65.3
SEGI_12663 Sequoiadendron giganteum HOM05D006799 ORTHO05D008391 3.1e-33 146.0 192 41.7
Thhalv10026882m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 4.4e-32 142.1 191 46.1
arahy.Tifrunner.gnm1.ann1.9RT6YB Arachis hypogaea HOM05D006799 ORTHO05D008391 3.8e-31 139.0 107 64.5
Rhsim01G0253100 Rhododendron simsii HOM05D006799 ORTHO05D008391 2.7e-21 106.3 99 58.6
Mapoly0010s0131 Marchantia polymorpha HOM05D006799 ORTHO05D008391 3.7e-18 95.9 185 35.7
AagrBONN_evm.TU.Sc2ySwM_228.181 Anthoceros agrestis HOM05D006799 ORTHO05D008391 8.1e-18 94.7 180 35.6
Pp3c22_13870 Physcomitrium patens HOM05D006799 ORTHO05D008391 1.1e-14 84.3 180 28.9
CBR_g52029 Chara braunii HOM05D006799 ORTHO05D008391 1.5e-11 73.9 120 38.3
Ca_19566_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 7.6e-08 61.6 39 69.2


User provided reference genes

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