Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 4.6e-93 344.7 197 100.0
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 7.3e-67 257.7 200 74.5
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.3e-63 246.9 194 79.4
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 2.6e-48 196.1 197 64.5
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 7.6e-48 194.5 199 62.8
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 1.3e-47 193.7 199 54.8
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 2.2e-47 193.0 197 65.5
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 2.9e-47 192.6 197 58.9
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 2.9e-47 192.6 197 65.0
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 1.9e-46 189.9 197 59.4
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 5.5e-46 188.3 197 63.5
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 2.7e-45 186.0 207 55.6
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 3.5e-45 185.7 202 53.5
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 4.6e-45 185.3 214 56.1
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 4.6e-45 185.3 197 53.3
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.3e-44 183.7 192 61.5
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 1.3e-44 183.7 215 55.3
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 3.3e-43 179.1 203 56.7
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 9.6e-43 177.6 216 49.1
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 1.3e-42 177.2 197 59.4
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 2.1e-42 176.4 196 53.1
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 4.8e-42 175.3 226 51.8
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 4.8e-42 175.3 202 51.0
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 4.8e-42 175.3 197 56.9
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 8.2e-42 174.5 219 52.1
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 1.4e-41 173.7 202 56.9
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 1.8e-41 173.3 218 55.5
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 1.8e-41 173.3 211 55.5
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 1.8e-41 173.3 194 58.2
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 4.0e-41 172.2 212 61.8
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 5.3e-41 171.8 232 51.3
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 1.2e-40 170.6 211 56.9
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 1.2e-40 170.6 197 54.3
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 1.2e-40 170.6 197 54.3
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.2e-40 170.6 198 55.1
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 1.5e-40 170.2 218 52.3
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 2.0e-40 169.9 196 55.6
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 5.8e-40 168.3 199 56.8
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 5.8e-40 168.3 192 52.1
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.0e-39 167.5 190 51.1
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 1.3e-39 167.2 206 49.0
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 1.7e-39 166.8 212 59.4
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 5.0e-39 165.2 203 47.3
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 6.5e-39 164.9 197 53.3
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 6.5e-39 164.9 221 50.7
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 1.9e-38 163.3 212 48.6
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 1.9e-38 163.3 228 49.6
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 3.2e-38 162.5 210 51.9
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 4.2e-38 162.2 217 51.6
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 4.2e-38 162.2 216 51.4
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 5.5e-38 161.8 219 58.0
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 5.5e-38 161.8 217 50.7
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 5.5e-38 161.8 210 52.9
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 9.3e-38 161.0 209 46.9
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.6e-37 160.2 214 53.7
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 1.6e-37 160.2 199 52.3
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 2.1e-37 159.8 198 51.0
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 2.1e-37 159.8 218 53.7
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 4.6e-37 158.7 226 53.5
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 4.6e-37 158.7 137 59.9
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 7.9e-37 157.9 220 50.9
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 1.0e-36 157.5 199 52.3
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 1.8e-36 156.8 221 49.8
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 3.9e-36 155.6 251 45.8
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 3.9e-36 155.6 209 52.6
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 6.7e-36 154.8 193 46.6
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 6.7e-36 154.8 208 44.2
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 1.1e-35 154.1 198 52.0
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.1e-35 154.1 248 46.8
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 1.5e-35 153.7 224 53.6
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 1.9e-35 153.3 216 49.5
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 4.3e-35 152.1 214 53.7
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 4.3e-35 152.1 199 53.8
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 5.7e-35 151.8 214 52.3
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 7.4e-35 151.4 204 50.5
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 9.7e-35 151.0 196 55.6
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 1.3e-34 150.6 193 46.1
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.6e-34 150.2 202 43.6
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 2.2e-34 149.8 223 47.5
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 3.7e-34 149.1 200 50.5
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 4.8e-34 148.7 209 47.8
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 1.1e-33 147.5 209 48.8
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 1.4e-33 147.1 199 50.3
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.4e-33 147.1 239 50.6
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 1.4e-33 147.1 191 51.8
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 1.8e-33 146.7 206 51.9
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 1.8e-33 146.7 202 50.5
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.8e-33 146.7 194 55.2
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 2.4e-33 146.4 209 46.9
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 4.1e-33 145.6 191 51.3
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 5.3e-33 145.2 146 54.8
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 5.3e-33 145.2 209 49.8
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 9.0e-33 144.4 201 47.8
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 2.0e-32 143.3 207 46.4
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 3.4e-32 142.5 215 40.9
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 3.4e-32 142.5 209 43.5
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 7.7e-32 141.4 196 50.5
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 7.7e-32 141.4 196 50.0
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 1.0e-31 141.0 191 50.3
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 1.0e-31 141.0 201 46.3
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 1.0e-31 141.0 208 51.4
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.0e-31 141.0 197 53.3
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 1.3e-31 140.6 184 54.3
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 1.3e-31 140.6 214 44.9
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 1.3e-31 140.6 214 44.9
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 1.7e-31 140.2 236 42.4
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 3.8e-31 139.0 235 37.4
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 6.5e-31 138.3 222 45.9
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 8.5e-31 137.9 207 50.2
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 1.4e-30 137.1 222 46.8
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 2.5e-30 136.3 220 45.0
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 2.5e-30 136.3 209 50.7
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 5.5e-30 135.2 228 39.0
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 7.2e-30 134.8 202 46.0
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 7.2e-30 134.8 198 52.0
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 9.4e-30 134.4 212 50.5
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 1.2e-29 134.0 196 40.8
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 1.2e-29 134.0 192 55.7
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 1.2e-29 134.0 198 54.5
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 1.6e-29 133.7 140 51.4
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 2.7e-29 132.9 208 45.2
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 7.9e-29 131.3 218 45.4
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 1.0e-28 131.0 195 45.6
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.4e-28 130.6 131 56.5
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 1.8e-28 130.2 196 39.8
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 1.8e-28 130.2 196 39.8
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 2.3e-28 129.8 218 45.4
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 2.3e-28 129.8 157 44.6
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 2.3e-28 129.8 198 39.4
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 6.7e-28 128.3 206 51.5
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 1.1e-27 127.5 225 50.2
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 1.5e-27 127.1 206 44.7
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 2.0e-27 126.7 195 45.1
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 2.0e-27 126.7 187 47.1
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 2.5e-27 126.3 227 41.4
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 4.3e-27 125.6 198 44.4
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 5.7e-27 125.2 217 39.2
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 5.7e-27 125.2 192 44.8
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 9.7e-27 124.4 203 44.3
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 9.7e-27 124.4 221 38.0
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 1.3e-26 124.0 195 44.6
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 1.3e-26 124.0 222 37.8
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 1.7e-26 123.6 193 40.9
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 4.8e-26 122.1 183 47.0
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 6.3e-26 121.7 200 44.0
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 4.1e-25 119.0 190 44.2
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 4.1e-25 119.0 204 45.1
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 1.2e-24 117.5 138 47.8
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 1.5e-24 117.1 202 42.6
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 4.5e-24 115.5 202 42.6
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 1.0e-23 114.4 196 36.2
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 1.0e-23 114.4 196 36.2
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 1.0e-23 114.4 196 36.2
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 2.7e-21 106.3 219 36.1
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 7.9e-21 104.8 136 52.2
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 7.9e-21 104.8 136 52.2
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 5.1e-20 102.1 136 51.5
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 5.1e-20 102.1 136 51.5
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 2.4e-17 93.2 184 33.2
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 4.1e-17 92.4 136 52.2
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 9.1e-17 91.3 217 29.0
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.0e-15 87.8 113 48.7
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 2.2e-15 86.7 136 47.8
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 2.9e-15 86.3 204 40.2
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 8.5e-15 84.7 204 39.7
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.9e-14 83.6 158 33.5
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.2e-14 82.8 189 41.3
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 3.2e-14 82.8 237 29.5
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 2.0e-11 73.6 44 68.2
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 2.8e-10 69.7 107 47.7
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 8.2e-10 68.2 39 71.8
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.8e-09 67.0 127 29.9
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 5.3e-09 65.5 127 30.7
Atru.chr1.737 Acer truncatum HOM05D003968 ORTHO05D004077 3.5e-08 62.8 27 100.0
MBI01_g34424_MAGBIO Magnolia biondii HOM05D001667 ORTHO05D001508 6.5e-07 58.5 140 30.0
SEGI_36735 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 8.5e-07 58.2 122 32.8
SEGI_23541 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 1.5e-06 57.4 125 32.8


User provided reference genes

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