Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI18G0705 Tripterygium wilfordii HOM05D007718 ORTHO05D009752 1.1e-72 276.6 141 100.0
GSVIVG01036292001 Vitis vinifera HOM05D007718 ORTHO05D009752 9.3e-40 167.2 140 62.9
Dinv22108 Davidia involucrata HOM05D007718 ORTHO05D009752 6.7e-38 161.0 128 64.8
Prupe.8G007200 Prunus persica HOM05D007718 ORTHO05D009752 4.3e-37 158.3 125 65.6
Actinidia04142 Actinidia chinensis HOM05D007718 ORTHO05D009752 2.1e-36 156.0 136 60.3
RcHm_v2.0_Chr6g0251251 Rosa chinensis HOM05D007718 ORTHO05D009752 2.8e-36 155.6 139 61.2
Nn5g27289 Nelumbo nucifera HOM05D007718 ORTHO05D009752 2.4e-35 152.5 130 58.5
Potri.019G071800 Populus trichocarpa HOM05D007718 ORTHO05D009752 2.4e-35 152.5 141 62.4
Manes.02G201400 Manihot esculenta HOM05D007718 ORTHO05D009752 4.1e-35 151.8 134 59.7
Manes.02G221600 Manihot esculenta HOM05D007718 ORTHO05D009752 5.3e-35 151.4 134 59.0
Manes.02G201100 Manihot esculenta HOM05D007718 ORTHO05D009752 1.5e-34 149.8 134 59.0
Manes.02G205384 Manihot esculenta HOM05D007718 ORTHO05D009752 1.5e-34 149.8 134 59.0
Rhsim01G0004700 Rhododendron simsii HOM05D007718 ORTHO05D009752 5.9e-34 147.9 109 63.3
QL08p027549 Quercus lobata HOM05D007718 ORTHO05D009752 2.2e-33 146.0 119 60.5
Thecc.08G178100 Theobroma cacao HOM05D007718 ORTHO05D009752 3.8e-33 145.2 93 76.3
Ciclev10022933m.g Citrus clementina HOM05D007718 ORTHO05D009752 8.5e-33 144.1 111 66.7
Aqoxy5G00833 Aquilegia oxysepala HOM05D007718 ORTHO05D009752 1.4e-32 143.3 129 59.7
MD05G1004000 Malus domestica HOM05D007718 ORTHO05D009752 4.2e-32 141.7 126 61.9
PSO170G0967 Papaver somniferum HOM05D007718 ORTHO05D009752 9.3e-32 140.6 130 59.2
FAN27G3322 Fragaria x ananassa HOM05D007718 ORTHO05D009752 1.2e-31 140.2 125 58.4
Atru.chr13.2493 Acer truncatum HOM05D007718 ORTHO05D009752 4.6e-31 138.3 98 67.3
Atru.chr13.2505 Acer truncatum HOM05D007718 ORTHO05D009752 7.9e-31 137.5 106 64.2
Gohir.A08G230000 Gossypium hirsutum HOM05D007718 ORTHO05D009752 2.3e-30 136.0 88 72.7
PSO017G4737 Papaver somniferum HOM05D007718 ORTHO05D009752 2.3e-30 136.0 119 58.0
Duzib177G0547 Durio zibethinus HOM05D007718 ORTHO05D009752 8.7e-30 134.0 86 75.6
Migut.C01378 Erythranthe guttata HOM05D007718 ORTHO05D009752 1.5e-29 133.3 94 66.0
Gohir.D08G250400 Gossypium hirsutum HOM05D007718 ORTHO05D009752 2.5e-29 132.5 88 70.5
Gorai.004G267100 Gossypium raimondii HOM05D007718 ORTHO05D009752 2.5e-29 132.5 88 70.5
CANSAT21G0081 Cannabis sativa HOM05D007718 ORTHO05D009752 3.3e-29 132.1 92 69.6
CANSAT21G2143 Cannabis sativa HOM05D007718 ORTHO05D009752 3.3e-29 132.1 92 69.6
COL.COLO4_05200 Corchorus olitorius HOM05D007718 ORTHO05D009752 4.3e-29 131.7 89 71.9
CiPaw.04G009400 Carya illinoinensis HOM05D007718 ORTHO05D009752 1.3e-28 130.2 124 54.0
CDE04G1586 Ceratophyllum demersum HOM05D007718 ORTHO05D009752 8.2e-28 127.5 89 67.4
TAR383G0451 Trochodendron aralioides HOM05D007718 ORTHO05D009752 1.1e-27 127.1 72 81.9
Sed0001698 Sechium edule HOM05D007718 ORTHO05D009752 2.4e-27 125.9 101 59.4
Ca_07513_v3 Cicer arietinum L. HOM05D007718 ORTHO05D009752 5.3e-27 124.8 136 50.7
Phvul.008G126000 Phaseolus vulgaris HOM05D007718 ORTHO05D009752 9.1e-27 124.0 136 50.7
ClCG08G001110 Citrullus lanatus HOM05D007718 ORTHO05D009752 2.0e-26 122.9 86 66.3
MELO3C022171.2 Cucumis melo HOM05D007718 ORTHO05D009752 3.4e-26 122.1 86 65.1
arahy.Tifrunner.gnm1.ann1.KNF5LM Arachis hypogaea HOM05D007718 ORTHO05D009752 7.7e-26 120.9 110 53.6
Glyma.08G353800 Glycine max HOM05D007718 ORTHO05D009752 1.3e-25 120.2 108 56.5
arahy.Tifrunner.gnm1.ann1.NNV5AG Arachis hypogaea HOM05D007718 ORTHO05D009752 2.9e-25 119.0 109 53.2
MSTRG.1597 Avicennia marina HOM05D007718 ORTHO05D009752 8.5e-25 117.5 89 58.4
Medtr7g057760 Medicago truncatula HOM05D007718 ORTHO05D009752 8.5e-25 117.5 102 57.8
EL10Ac1g01266 Beta vulgaris HOM05D007718 ORTHO05D009752 1.1e-24 117.1 114 49.1
SGA_v2.0_scaffold24G10646 Striga asiatica HOM05D007718 ORTHO05D009752 1.9e-24 116.3 106 52.8
TPR.G23283 Trifolium pratense HOM05D007718 ORTHO05D009752 1.9e-24 116.3 114 55.3
Lalb_Chr03g0041731 Lupinus albus HOM05D007718 ORTHO05D009752 2.5e-24 115.9 112 52.7
ECA232G2296 Erigeron canadensis HOM05D005243 ORTHO05D006670 4.2e-24 115.2 100 51.0
Ah.05g170340 Amaranthus hybridus HOM05D007718 ORTHO05D009752 3.0e-22 109.0 113 47.8
Lsat_1_v5_gn_3_36061 Lactuca sativa HOM05D007718 ORTHO05D009752 6.7e-22 107.8 128 45.3
HanXRQChr09g0267041 Helianthus annuus HOM05D007718 ORTHO05D009752 1.1e-21 107.1 106 48.1
HPP92_012514 Vanilla planifolia HOM05D007718 ORTHO05D009752 2.6e-21 105.9 129 44.2
ATR1089G029 Amborella trichopoda HOM05D007718 ORTHO05D009752 5.7e-21 104.8 96 50.0
CSS0008152 Camellia sinensis var. sinensis HOM05D007718 ORTHO05D009752 2.8e-20 102.4 63 73.0
THA.LOC104807782 Tarenaya hassleriana HOM05D007718 ORTHO05D009752 2.8e-20 102.4 92 54.3
FvH4_2g00852 Fragaria vesca HOM05D007718 ORTHO05D009752 4.1e-19 98.6 75 66.7
unitig_26.g9859 Utricularia gibba HOM05D007718 ORTHO05D009752 5.3e-19 98.2 73 63.0
Cc10_g08650 Coffea canephora HOM05D007718 ORTHO05D009752 9.1e-19 97.4 105 44.8
Nn5g31449 Nelumbo nucifera HOM05D007718 ORTHO05D009752 9.1e-19 97.4 64 67.2
Peaxi162Scf00048g00419 Petunia axillaris HOM05D007718 ORTHO05D009752 1.5e-18 96.7 56 76.8
C04p50420 Brassica napus HOM05D007718 ORTHO05D009752 1.3e-17 93.6 65 67.7
AL4G10300 Arabidopsis lyrata HOM05D007718 ORTHO05D009752 1.7e-17 93.2 65 67.7
AT2G21195 Arabidopsis thaliana HOM05D007718 ORTHO05D009752 3.8e-17 92.0 65 60.0
CARHR112060 Cardamine hirsuta HOM05D007718 ORTHO05D009752 3.8e-17 92.0 68 64.7
vmacro13123 Vaccinium macrocarpon HOM05D007718 ORTHO05D009752 3.8e-17 92.0 64 68.8
BolC4t26639H Brassica oleracea HOM05D007718 ORTHO05D009752 5.0e-17 91.7 65 66.2
A04p15950 Brassica napus HOM05D007718 ORTHO05D009752 8.5e-17 90.9 64 64.1
AUR62038531 Chenopodium quinoa HOM05D007718 ORTHO05D009752 8.5e-17 90.9 91 48.4
Zm00001eb304750 Zea mays HOM05D007718 ORTHO05D009752 1.1e-16 90.5 68 58.8
Thhalv10000395m.g Eutrema salsugineum HOM05D007718 ORTHO05D009752 1.9e-16 89.7 64 64.1
Oeu020544.1 Olea europaea HOM05D007718 ORTHO05D009752 1.9e-16 89.7 177 36.7
SalBow7G2847 Salvia bowleyana HOM05D007718 ORTHO05D009752 1.9e-16 89.7 148 37.2
Carub.0004s0023 Capsella rubella HOM05D007718 ORTHO05D009752 5.5e-16 88.2 58 65.5
Os07g0265100 Oryza sativa ssp. japonica HOM05D007718 ORTHO05D009752 5.5e-16 88.2 67 56.7
BraA04t17231Z Brassica rapa HOM05D007718 ORTHO05D009752 2.1e-15 86.3 53 66.0
SEGI_14522 Sequoiadendron giganteum HOM05D007718 ORTHO05D009752 2.7e-15 85.9 147 36.7
Lj1g0018023 Lotus japonicus HOM05D007718 ORTHO05D009752 3.6e-15 85.5 93 51.6
Psat3g145480 Pisum sativum HOM05D007718 ORTHO05D009752 4.7e-15 85.1 87 47.1
FAN20G0290 Fragaria x ananassa HOM05D005243 ORTHO05D009752 1.4e-14 83.6 65 64.6
AagrBONN_evm.TU.Sc2ySwM_344.3280 Anthoceros agrestis HOM05D007718 ORTHO05D009752 4.8e-12 75.1 75 45.3
Aa31LG7G15310 Aethionema arabicum HOM05D007718 ORTHO05D009752 7.7e-10 67.8 41 73.2
Aa31sc115G10 Aethionema arabicum HOM05D007718 ORTHO05D009752 1.7e-09 66.6 47 66.0
Mapoly0002s0003 Marchantia polymorpha HOM05D007718 ORTHO05D009752 2.2e-09 66.2 88 35.2
BcaC02g08810 Brassica carinata HOM05D007718 ORTHO05D009752 1.1e-08 63.9 50 58.0
VMungo1383G3332 Vigna mungo HOM05D000479 ORTHO05D001285 1.1e-08 63.9 35 80.0
CsaV3_5G039910 Cucumis sativus L. HOM05D007718 ORTHO05D009752 1.6e-07 60.1 81 39.5
FAN24G0504 Fragaria x ananassa HOM05D007718 ORTHO05D009752 6.1e-07 58.2 59 49.2


User provided reference genes

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