Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 0.0e+00 1541.9 754 100.0
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 0.0e+00 1102.4 739 71.6
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 0.0e+00 1095.9 735 71.8
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 0.0e+00 1095.5 702 74.4
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 0.0e+00 1091.6 702 74.1
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 0.0e+00 1088.6 739 70.6
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 0.0e+00 1079.3 702 73.5
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 1.5e-311 1072.4 699 73.2
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 2.1e-311 1072.0 726 70.2
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 3.6e-311 1071.2 726 70.2
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 9.6e-309 1063.1 705 71.8
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 5.3e-307 1057.4 701 71.6
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 1.2e-306 1056.2 699 72.2
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 9.9e-306 1053.1 731 70.3
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 2.2e-305 1052.0 758 67.0
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 9.3e-304 1046.6 739 69.4
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 2.7e-303 1045.0 728 69.5
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 4.3e-301 1037.7 699 71.5
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 1.0e-297 1026.5 719 70.2
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 2.5e-296 1021.9 692 71.7
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 5.5e-296 1020.8 705 69.1
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 1.0e-294 1016.5 730 66.6
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 1.9e-293 1012.3 695 69.6
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 2.5e-293 1011.9 700 69.1
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 2.2e-289 998.8 745 65.5
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 4.2e-288 994.6 699 67.5
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 7.9e-287 990.3 723 64.9
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 1.4e-286 989.6 723 66.4
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 3.9e-286 988.0 700 69.7
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 3.9e-286 988.0 733 67.3
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 5.7e-285 984.2 724 65.5
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 9.7e-285 983.4 700 67.7
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 4.1e-283 978.0 694 69.3
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 9.1e-283 976.9 695 67.2
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 3.4e-282 974.9 695 66.3
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 8.5e-281 970.3 698 66.6
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 9.4e-280 966.8 741 64.1
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 3.6e-279 964.9 721 65.5
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 2.3e-278 962.2 702 67.5
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 7.4e-277 957.2 700 65.6
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 4.8e-276 954.5 728 64.4
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 7.7e-274 947.2 700 66.0
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 1.7e-273 946.0 725 62.8
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 2.9e-273 945.3 724 62.8
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 2.9e-273 945.3 722 62.7
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 1.9e-272 942.6 727 64.4
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 2.7e-271 938.7 722 62.7
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 3.6e-271 938.3 606 73.3
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 5.2e-270 934.5 736 62.8
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 1.1e-269 933.3 748 61.4
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 5.7e-269 931.0 718 62.1
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 3.1e-267 925.2 715 62.7
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 1.2e-266 923.3 740 63.4
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 1.6e-266 922.9 708 64.7
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 2.0e-266 922.5 726 61.0
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 3.5e-266 921.8 720 63.5
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 1.8e-262 909.4 751 60.3
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 3.0e-262 908.7 715 61.8
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.5e-261 906.4 740 62.8
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 3.7e-260 901.7 738 61.2
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 3.7e-260 901.7 730 61.1
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 8.2e-260 900.6 719 60.8
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 8.2e-260 900.6 619 70.4
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 1.8e-259 899.4 727 60.7
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 3.1e-259 898.7 734 59.9
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 2.0e-258 896.0 719 60.5
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 1.9e-256 889.4 719 60.9
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 4.2e-256 888.3 742 59.0
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 6.8e-254 880.9 727 60.2
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 8.8e-254 880.6 723 59.9
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 8.3e-252 874.0 722 60.8
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 2.4e-251 872.5 723 59.5
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 5.9e-250 867.8 702 61.1
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 1.0e-249 867.1 670 62.5
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 1.5e-245 853.2 745 57.4
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 5.7e-245 851.3 759 56.4
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 1.8e-243 846.3 712 58.8
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 1.3e-241 840.1 698 60.0
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 7.3e-240 834.3 723 57.8
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 1.7e-236 823.2 548 70.3
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 3.0e-233 812.4 724 55.7
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 5.6e-232 808.1 679 58.9
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 9.5e-232 807.4 734 54.2
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 5.2e-230 801.6 645 61.7
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.0e-229 799.7 733 53.9
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 5.8e-229 798.1 701 57.6
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 9.8e-229 797.3 728 55.1
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 7.8e-226 787.7 664 59.2
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 1.3e-225 786.9 634 60.6
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 6.8e-222 774.6 700 58.0
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 2.8e-215 752.7 721 55.1
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 4.7e-215 751.9 694 54.2
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 9.6e-200 701.0 706 49.3
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 4.9e-196 688.7 733 49.9
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 5.6e-192 675.2 715 50.5
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 5.3e-190 668.7 645 54.7
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 5.8e-189 665.2 601 56.1
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.5e-181 640.6 482 64.1
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 1.5e-157 560.8 526 56.3
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 3.5e-157 559.7 431 63.8
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 4.8e-151 539.3 399 67.4
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 3.6e-138 496.5 709 38.9
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 8.0e-138 495.4 678 40.7
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 6.6e-124 449.1 647 40.0
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 2.5e-123 447.2 365 59.7
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 1.0e-116 425.2 771 36.2
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 1.6e-114 417.9 697 35.3
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 6.2e-114 416.0 787 34.2
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 1.6e-109 401.4 334 57.5
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 1.6e-109 401.4 767 35.5
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 2.1e-109 401.0 680 36.2
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 4.0e-89 333.6 332 54.8
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.6e-85 321.6 285 60.7
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 2.6e-72 277.7 176 73.9
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 4.5e-72 276.9 190 68.4
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 3.8e-71 273.9 561 32.8
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 5.5e-62 243.4 195 65.6
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 4.3e-59 233.8 167 63.5
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 7.7e-56 223.0 326 40.2
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 3.8e-55 220.7 137 75.9
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 4.4e-43 180.6 471 31.6
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 7.2e-38 163.3 125 61.6
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 1.5e-30 139.0 127 48.0
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 1.1e-25 122.9 87 58.6
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 2.2e-23 115.2 75 68.0
MD04G1248000 Malus domestica HOM05D005923 ORTHO05D007376 3.3e-14 84.7 83 55.4
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 4.3e-14 84.3 400 23.2
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.6e-13 82.4 80 47.5
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.4e-12 79.3 80 45.0
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 2.4e-09 68.6 104 42.3
SMO335G0023 Selaginella moellendorffii HOM05D047118 ORTHO05D007376 7.8e-08 63.5 130 34.6
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 7.8e-08 63.5 60 60.0
Ciclev10023289m.g Citrus clementina HOM05D005923 ORTHO05D007376 4.3e-06 57.8 47 59.6


User provided reference genes

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