Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1844.3 901 100.0
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1588.5 901 87.3
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1339.3 953 71.2
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1326.6 934 72.1
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1323.1 933 71.8
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1317.8 953 70.6
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1297.7 929 71.0
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1295.0 941 70.6
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1289.2 973 67.7
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1289.2 948 70.6
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1285.4 948 69.7
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1278.5 945 69.9
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1272.3 959 69.1
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1271.5 988 67.4
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1265.0 950 69.2
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1264.2 944 68.9
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1263.4 936 70.3
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1261.1 950 69.1
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1258.4 943 68.5
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1256.9 943 68.8
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1252.7 948 67.3
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1251.9 952 67.1
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1246.5 972 65.5
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1246.1 946 67.4
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1241.9 951 66.5
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1239.2 948 66.7
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1236.1 935 68.7
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1228.4 915 69.2
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1222.2 935 67.0
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1215.7 927 67.5
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1212.6 913 68.1
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1212.6 946 66.2
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1211.1 942 67.0
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1209.5 929 67.8
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1208.0 1025 62.8
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1207.2 926 67.4
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1204.5 983 64.3
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1204.5 923 68.0
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1202.2 910 67.4
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1201.0 924 68.3
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1200.7 927 67.1
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1196.4 924 65.4
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1193.3 935 66.1
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1193.3 968 64.8
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1191.4 927 65.9
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 0.0e+00 1186.8 1053 61.2
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1186.4 923 66.5
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1186.0 1024 61.3
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1183.3 901 67.0
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1181.4 937 65.1
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1178.3 931 66.5
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1176.4 947 64.3
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 0.0e+00 1175.2 916 66.7
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1172.1 928 66.3
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1171.4 927 63.5
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1170.6 928 63.5
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1167.9 951 63.2
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1166.0 1066 59.8
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 0.0e+00 1166.0 951 63.3
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 0.0e+00 1161.4 952 63.8
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1159.8 930 64.0
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 0.0e+00 1159.4 946 63.0
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1158.3 866 68.6
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1154.4 922 66.2
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1153.3 930 63.9
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1153.3 930 63.9
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1151.0 967 62.6
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1150.6 932 63.3
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 0.0e+00 1149.8 949 62.5
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 0.0e+00 1148.3 943 62.9
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 0.0e+00 1148.3 938 62.8
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1147.1 1007 60.6
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1139.8 1007 60.3
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1138.3 823 70.5
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1137.9 1007 60.2
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1137.5 950 61.9
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1133.2 929 62.2
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1133.2 929 62.2
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1131.3 951 61.4
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 0.0e+00 1127.9 978 61.0
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 0.0e+00 1127.5 929 62.2
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1127.5 894 63.8
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1123.2 912 62.4
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1123.2 993 60.3
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 0.0e+00 1122.5 945 63.6
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1121.3 941 61.3
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1110.5 931 61.4
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1110.1 890 63.3
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 0.0e+00 1104.4 959 61.7
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 0.0e+00 1104.4 929 62.2
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 0.0e+00 1098.6 963 60.5
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 0.0e+00 1097.8 936 60.7
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 0.0e+00 1095.1 897 61.9
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1086.2 880 63.4
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1082.0 890 63.3
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 0.0e+00 1080.9 943 60.8
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 0.0e+00 1078.9 847 66.4
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1078.5 916 63.0
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 0.0e+00 1075.8 851 66.4
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 1.4e-306 1056.2 1057 54.3
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 5.3e-306 1054.3 916 59.5
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 1.1e-303 1046.6 932 60.1
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 8.8e-301 1036.9 927 59.2
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 2.0e-300 1035.8 875 61.0
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 5.7e-300 1034.2 1180 51.2
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 2.5e-295 1018.8 1043 54.6
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 4.4e-292 1008.1 976 56.6
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 5.7e-292 1007.7 977 56.8
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 1.3e-291 1006.5 971 56.4
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 1.3e-288 996.5 809 63.8
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 2.3e-288 995.7 942 57.6
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 2.1e-265 919.5 774 62.4
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 2.5e-263 912.5 875 56.0
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 2.7e-257 892.5 698 67.2
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 6.0e-257 891.3 949 52.5
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 3.1e-253 879.0 756 60.4
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 6.4e-251 871.3 984 49.2
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 2.1e-246 856.3 840 52.9
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 1.2e-244 850.5 810 55.7
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 3.9e-232 808.9 1102 42.2
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 4.9e-219 765.4 717 56.8
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 4.1e-205 719.2 626 61.7
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 3.0e-200 703.0 632 59.2
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.5e-196 690.6 665 58.0
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 3.3e-191 672.9 427 77.0
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 3.7e-182 642.9 757 49.9
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.8e-161 573.5 373 75.6
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.6e-159 567.0 411 69.6
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 1.9e-154 550.8 465 64.5
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 2.8e-153 547.0 393 69.5
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.4e-133 481.5 708 43.2
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 4.2e-133 479.9 599 49.1
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.1e-125 455.3 300 73.7
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 2.7e-124 450.7 294 73.5
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 6.0e-124 449.5 551 48.6
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 5.3e-120 436.4 478 54.0
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 7.1e-117 426.0 288 68.8
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 3.9e-107 393.7 322 59.9
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 1.1e-101 375.6 341 57.2
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 4.2e-101 373.6 224 79.5
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 1.7e-57 228.8 172 67.4
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.2e-52 212.6 139 73.4
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 4.9e-49 200.7 134 72.4
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.4e-48 199.1 215 52.1
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 4.6e-47 194.1 130 74.6
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.3e-33 149.4 281 42.0
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 4.9e-33 147.5 113 65.5
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 4.1e-32 144.4 166 48.8
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 6.0e-31 140.6 109 62.4
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 2.8e-28 131.7 76 84.2
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 2.7e-23 115.2 86 62.8
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 3.4e-18 98.2 66 75.8
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 1.9e-16 92.4 160 35.0
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 7.1e-16 90.5 275 31.6
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 9.3e-16 90.1 70 62.9
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 2.1e-15 89.0 74 68.9
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 6.6e-14 84.0 89 52.8
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 1.4e-11 76.3 94 40.4
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 2.9e-09 68.6 68 48.5
BcaC05g27051 Brassica carinata HOM05D004101 ORTHO05D027158 6.4e-09 67.4 146 31.5
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 1.1e-08 66.6 50 68.0
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.9e-08 65.9 62 54.8
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 2.4e-08 65.5 35 80.0
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 4.2e-08 64.7 53 52.8
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 4.2e-08 64.7 53 52.8
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 1.2e-07 63.2 53 52.8
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 3.5e-07 61.6 75 52.0
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.0e-06 60.1 52 59.6
VMungo0251G2090 Vigna mungo HOM05D003461 ORTHO05D006812 8.7e-06 57.0 32 75.0


User provided reference genes

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