Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 0.0e+00 1201.4 618 100.0
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 0.0e+00 1102.0 618 91.1
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 0.0e+00 1099.0 618 90.5
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 0.0e+00 1097.8 618 90.1
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 0.0e+00 1097.0 618 90.1
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 0.0e+00 1087.8 618 89.5
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 0.0e+00 1086.6 618 89.5
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 0.0e+00 1084.3 618 89.0
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 0.0e+00 1083.9 617 89.0
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 0.0e+00 1083.2 618 88.5
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 0.0e+00 1081.6 618 88.3
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 4.2e-312 1073.9 618 88.0
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 1.7e-311 1072.0 618 88.3
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 3.5e-309 1064.3 619 87.7
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 1.0e-308 1062.8 615 87.6
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 6.7e-308 1060.1 618 87.2
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 4.3e-307 1057.4 615 87.0
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 7.4e-307 1056.6 618 86.7
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 2.8e-306 1054.7 628 85.4
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 3.1e-305 1051.2 625 85.8
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 3.1e-305 1051.2 618 86.4
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 6.9e-305 1050.0 618 86.9
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 2.6e-304 1048.1 618 85.8
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 1.0e-303 1046.2 642 84.0
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 1.4e-302 1042.3 616 86.2
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 1.9e-302 1042.0 619 85.8
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 3.2e-302 1041.2 618 85.3
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 9.3e-302 1039.6 618 85.1
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 7.9e-301 1036.6 618 85.8
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 7.4e-299 1030.0 618 84.3
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 1.3e-298 1029.2 618 85.3
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 4.8e-298 1027.3 618 84.0
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 1.2e-296 1022.7 619 83.7
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 2.0e-296 1021.9 685 79.7
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 2.6e-296 1021.5 621 83.6
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 4.5e-296 1020.8 657 81.1
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 1.3e-295 1019.2 617 83.3
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 5.5e-294 1013.8 618 83.5
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 2.7e-293 1011.5 620 84.5
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 2.7e-293 1011.5 618 83.2
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 1.5e-291 1005.7 619 83.0
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 1.5e-291 1005.7 619 83.0
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 2.5e-291 1005.0 618 82.2
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 5.3e-289 997.3 620 82.3
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 9.1e-289 996.5 616 81.5
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 3.4e-288 994.6 618 82.8
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 3.4e-288 994.6 624 81.7
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 4.5e-288 994.2 753 71.4
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 8.5e-287 989.9 617 81.2
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 8.5e-287 989.9 617 81.4
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 1.4e-286 989.2 617 81.2
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 4.2e-286 987.6 619 80.9
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 4.2e-286 987.6 618 80.4
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 5.5e-286 987.3 617 80.9
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 6.1e-285 983.8 617 81.2
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 7.9e-285 983.4 617 80.6
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 4.8e-282 974.2 617 79.9
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 4.8e-282 974.2 623 80.1
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 2.4e-281 971.8 614 79.5
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 4.1e-281 971.1 650 77.1
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 1.2e-280 969.5 614 79.2
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 1.5e-280 969.1 611 79.9
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 5.9e-280 967.2 610 79.5
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 6.5e-279 963.8 645 76.0
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 1.4e-278 962.6 618 79.1
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 1.0e-276 956.4 618 77.7
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 8.8e-276 953.4 618 78.6
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 1.1e-275 953.0 617 78.8
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 1.1e-275 953.0 542 88.9
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.7e-274 949.1 629 76.6
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 4.8e-274 947.6 615 77.2
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 1.8e-273 945.7 615 76.9
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 3.2e-270 934.9 615 77.4
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 9.4e-270 933.3 615 77.7
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 8.8e-268 926.8 615 76.4
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 2.2e-266 922.2 616 75.0
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 2.8e-266 921.8 618 75.6
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 6.3e-266 920.6 617 75.9
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 1.4e-265 919.5 575 80.5
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 7.7e-264 913.7 639 74.3
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 6.5e-263 910.6 583 79.6
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 3.6e-261 904.8 633 73.9
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 5.7e-259 897.5 517 88.0
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 7.5e-259 897.1 618 74.9
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 7.5e-259 897.1 600 75.3
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 1.7e-255 885.9 517 85.7
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 2.3e-255 885.6 602 74.6
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.6e-253 879.4 624 74.7
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 1.4e-252 876.3 615 71.7
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 3.4e-251 871.7 576 78.6
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 1.3e-247 859.8 514 86.4
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 5.4e-241 837.8 616 70.6
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 1.4e-236 823.2 616 67.2
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 8.3e-226 787.3 447 89.7
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 1.2e-219 766.9 567 72.3
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 2.0e-219 766.1 558 72.2
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 1.9e-217 759.6 469 80.8
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 5.1e-215 751.5 615 59.2
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 1.6e-205 719.9 620 57.9
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 1.3e-199 700.3 615 58.0
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 4.9e-186 655.2 649 52.1
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 8.7e-183 644.4 362 91.2
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 7.7e-171 604.7 342 91.8
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 1.8e-167 593.6 490 68.6
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 1.7e-165 587.0 360 83.3
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 7.2e-161 571.6 617 49.4
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 1.1e-156 557.8 394 76.1
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 1.8e-151 540.4 617 46.5
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 3.5e-139 499.6 364 68.4
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 1.9e-121 440.7 511 45.6
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 4.7e-120 436.0 598 44.3
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 4.7e-120 436.0 282 82.6
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 2.9e-117 426.8 375 64.8
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 3.8e-101 373.2 458 51.7
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 6.7e-82 309.3 175 88.6
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 8.7e-82 308.9 174 89.7
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.3e-66 258.5 149 90.6
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.5e-65 255.0 188 63.8
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 1.7e-61 241.5 144 86.8
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.0e-58 232.3 134 84.3
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 3.4e-54 217.2 117 88.9
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 1.6e-51 208.4 122 85.2
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 2.1e-51 208.0 151 70.2
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 9.1e-47 192.6 135 71.1
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 1.7e-45 188.3 106 84.9
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 5.5e-44 183.3 105 81.0
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 7.2e-44 183.0 105 90.5
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 9.7e-41 172.6 178 54.5
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 7.5e-33 146.4 86 86.0
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 2.9e-29 134.4 74 91.9
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 1.5e-28 132.1 102 70.6
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 5.2e-26 123.6 106 55.7
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 3.1e-23 114.4 58 87.9
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 9.1e-23 112.8 103 66.0
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 1.3e-21 109.0 76 72.4
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.3e-21 109.0 86 66.3
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 2.9e-21 107.8 59 78.0
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 2.9e-21 107.8 59 78.0
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 1.5e-20 105.5 59 79.7
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 1.5e-20 105.5 59 79.7
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 2.8e-19 101.3 54 90.7
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 4.6e-14 84.0 56 64.3
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 5.9e-14 83.6 50 74.0
TAR375G0464 Trochodendron aralioides HOM05D004954 ORTHO05D006267 5.6e-12 77.0 43 83.7
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 1.8e-10 72.0 48 79.2
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 1.8e-10 72.0 43 65.1
QL09p053081 Quercus lobata HOM05D002786 ORTHO05D030058 2.9e-08 64.7 54 66.7
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 3.7e-08 64.3 80 43.8
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.4e-07 62.4 38 71.1
Hma1.2p1_0717F.1_g208260 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 1.6e-06 58.9 34 79.4
Hma1.2p1_2056F.1_g312790 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 1.6e-06 58.9 85 48.2


User provided reference genes

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