Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 1.1e-292 1009.2 506 100.0
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 1.1e-255 886.3 513 88.1
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 1.5e-225 786.2 509 79.6
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 1.0e-221 773.5 509 78.6
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 2.5e-220 768.8 511 79.1
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 3.3e-220 768.5 509 78.4
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 8.1e-219 763.8 510 78.0
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 6.8e-218 760.8 509 77.8
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 7.6e-217 757.3 511 77.9
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 1.7e-213 746.1 512 76.4
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 2.3e-213 745.7 508 75.8
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 6.6e-213 744.2 512 75.0
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 3.3e-212 741.9 512 76.2
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 2.1e-211 739.2 509 75.4
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 1.4e-210 736.5 512 74.6
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 9.0e-210 733.8 511 75.7
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 2.2e-208 729.2 513 76.8
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 3.8e-208 728.4 512 74.8
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 2.4e-207 725.7 506 74.9
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 1.2e-206 723.4 512 75.2
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 2.3e-205 719.2 513 72.9
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 1.5e-204 716.5 506 74.1
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 3.6e-203 711.8 509 73.3
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 4.8e-203 711.4 520 74.4
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 8.1e-203 710.7 510 71.6
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 3.4e-201 705.3 518 71.0
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 7.6e-201 704.1 511 71.2
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 1.7e-200 703.0 507 71.6
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 3.2e-199 698.7 509 72.7
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 5.4e-199 698.0 508 72.0
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 2.7e-198 695.7 508 71.1
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 1.3e-197 693.3 511 72.8
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 1.8e-197 693.0 506 71.3
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 3.0e-197 692.2 509 70.5
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 3.9e-197 691.8 506 72.3
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 6.7e-197 691.0 516 70.9
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 8.7e-197 690.6 513 71.0
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 2.5e-196 689.1 513 71.2
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 3.3e-196 688.7 512 71.5
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 4.3e-196 688.3 512 71.7
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 5.6e-196 688.0 513 70.0
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 7.4e-196 687.6 509 71.1
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 8.1e-195 684.1 503 70.4
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 1.1e-194 683.7 512 71.3
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 1.8e-194 682.9 511 72.6
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 6.9e-194 681.0 509 70.7
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 2.0e-193 679.5 506 71.1
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 3.4e-193 678.7 512 70.9
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 5.8e-193 677.9 517 69.6
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 5.8e-193 677.9 514 70.2
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 5.8e-193 677.9 502 69.5
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 1.0e-192 677.2 508 71.5
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 1.3e-192 676.8 514 69.1
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 2.9e-192 675.6 534 70.0
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 1.1e-191 673.7 508 69.7
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 4.2e-191 671.8 518 69.7
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 1.2e-190 670.2 511 70.1
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 1.0e-189 667.2 517 70.4
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 1.3e-189 666.8 517 70.6
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 5.1e-189 664.8 509 68.8
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 6.7e-189 664.5 504 70.0
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 6.7e-189 664.5 508 68.9
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 1.1e-188 663.7 507 69.6
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 2.1e-187 659.4 512 69.3
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 2.0e-185 652.9 511 69.9
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 3.4e-185 652.1 521 66.6
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 4.5e-185 651.7 507 69.8
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 2.2e-184 649.4 506 68.8
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.9e-184 649.0 509 69.7
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 3.8e-184 648.7 510 69.2
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 5.0e-184 648.3 504 68.3
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 5.0e-184 648.3 515 68.2
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.9e-183 646.4 510 69.2
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 4.2e-183 645.2 510 69.0
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 7.1e-183 644.4 509 68.0
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 2.1e-182 642.9 518 66.6
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 6.1e-182 641.3 509 68.0
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 1.3e-181 640.2 510 68.2
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 1.8e-181 639.8 507 67.5
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 4.8e-179 631.7 512 66.0
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 8.2e-179 630.9 506 67.2
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 5.3e-178 628.2 508 66.3
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 3.4e-177 625.5 521 66.6
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 7.7e-177 624.4 506 66.8
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 1.0e-176 624.0 515 66.8
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 2.2e-176 622.9 524 64.7
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 2.9e-176 622.5 504 67.1
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 6.5e-176 621.3 504 66.9
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 1.4e-175 620.2 527 64.9
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 3.9e-173 612.1 466 69.1
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 3.9e-173 612.1 517 65.8
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 3.9e-173 612.1 512 65.2
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 1.5e-172 610.1 512 65.0
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 1.3e-171 607.1 525 63.8
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 6.3e-171 604.7 520 63.8
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 3.1e-170 602.4 524 63.5
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 3.2e-167 592.4 464 67.0
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 4.2e-167 592.0 514 64.0
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 4.8e-163 578.6 521 61.2
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 4.5e-161 572.0 524 60.9
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 2.9e-160 569.3 529 60.7
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 8.5e-160 567.8 509 61.9
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 2.0e-156 556.6 459 65.6
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 1.4e-154 550.4 509 62.1
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 5.9e-153 545.0 520 59.2
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 3.0e-141 506.1 518 56.6
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 1.2e-140 504.2 518 56.8
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 1.5e-140 503.8 515 56.7
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 2.0e-137 493.4 533 54.0
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 1.9e-135 486.9 482 57.5
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 3.6e-134 482.6 506 57.3
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 9.2e-122 441.4 510 53.7
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 3.0e-120 436.4 543 49.4
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 4.7e-118 429.1 531 50.3
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 9.8e-116 421.4 306 69.9
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 6.8e-109 398.7 292 72.9
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 4.9e-107 392.5 515 48.0
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 5.6e-95 352.4 510 46.7
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 7.6e-84 315.5 582 38.8
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 2.2e-59 234.2 283 49.1
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 4.5e-52 209.9 201 61.7
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 2.9e-51 207.2 340 39.4
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 1.0e-43 182.2 276 41.3
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 3.2e-26 124.0 97 68.0
FAN14G5926 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.4e-24 118.6 80 71.2
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 3.1e-21 107.5 480 26.0
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 3.1e-21 107.5 73 74.0
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 2.0e-20 104.8 504 24.6
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 1.0e-16 92.4 70 61.4
FAN02G4549 Fragaria x ananassa HOM05D005917 ORTHO05D007517 9.8e-15 85.9 62 66.1
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 9.2e-13 79.3 181 33.1
Nn6g32049 Nelumbo nucifera HOM05D005917 ORTHO05D007517 8.6e-11 72.8 62 59.7
Nn6g32048 Nelumbo nucifera HOM05D005917 ORTHO05D007517 1.4e-08 65.5 81 50.6


User provided reference genes

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