Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI18G0239 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 7.6e-92 340.5 173 100.0
CSS0001120 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 1.5e-68 263.1 169 74.6
Ciclev10016955m.g Citrus clementina HOM05D005570 ORTHO05D007368 4.2e-66 255.0 171 73.1
Gohir.D01G037900 Gossypium hirsutum HOM05D005570 ORTHO05D007368 2.1e-65 252.7 170 74.1
Gorai.002G046300 Gossypium raimondii HOM05D005570 ORTHO05D007368 2.1e-65 252.7 170 74.1
COL.COLO4_17467 Corchorus olitorius HOM05D005570 ORTHO05D007368 2.7e-65 252.3 169 72.8
Gohir.A01G047200 Gossypium hirsutum HOM05D005570 ORTHO05D007368 1.0e-64 250.4 170 72.9
Thecc.07G134300 Theobroma cacao HOM05D005570 ORTHO05D007368 5.1e-64 248.1 167 73.7
Duzib213G1053 Durio zibethinus HOM05D005570 ORTHO05D007368 6.7e-64 247.7 168 71.4
CSS0020937 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 1.1e-63 246.9 169 70.4
Sc21g0000460 Simmondsia chinensis HOM05D005570 ORTHO05D007368 2.5e-63 245.7 173 68.8
Lj9C217G3 Lonicera japonica HOM05D005570 ORTHO05D007368 4.3e-63 245.0 173 69.4
HanXRQChr03g0075001 Helianthus annuus HOM05D005570 ORTHO05D007368 9.6e-63 243.8 166 71.7
Cfa018716 Carpinus fangiana HOM05D005570 ORTHO05D007368 2.1e-62 242.7 170 71.2
Atru.chr6.3424 Acer truncatum HOM05D005570 ORTHO05D007368 8.1e-62 240.7 175 70.9
Lsat_1_v5_gn_9_102501 Lactuca sativa HOM05D005570 ORTHO05D007368 8.1e-62 240.7 173 68.2
Hma1.2p1_0599F.1_g187020 Hydrangea macrophylla HOM05D005570 ORTHO05D007368 1.1e-61 240.4 173 68.8
Nitab4.5_0005354g0010 Nicotiana tabacum HOM05D005570 ORTHO05D007368 1.4e-61 240.0 173 67.1
Peaxi162Scf00612g00133 Petunia axillaris HOM05D005570 ORTHO05D007368 1.8e-61 239.6 164 72.6
Manes.13G060500 Manihot esculenta HOM05D005570 ORTHO05D007368 2.4e-61 239.2 172 70.3
Haze_07109 Corylus avellana HOM05D005570 ORTHO05D007368 4.0e-61 238.4 170 70.0
Solyc07g042710.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 5.3e-61 238.0 162 71.6
Sopen07g023810 Solanum pennellii HOM05D005570 ORTHO05D007368 5.3e-61 238.0 162 71.6
MSTRG.12255 Avicennia marina HOM05D005570 ORTHO05D007368 6.9e-61 237.7 173 67.6
Nitab4.5_0005376g0020 Nicotiana tabacum HOM05D005570 ORTHO05D007368 9.0e-61 237.3 173 66.5
Carub.0003s2602 Capsella rubella HOM05D005570 ORTHO05D007368 1.2e-60 236.9 173 65.3
Rhsim04G0030600 Rhododendron simsii HOM05D005570 ORTHO05D007368 2.0e-60 236.1 168 69.0
Prupe.5G143000 Prunus persica HOM05D005570 ORTHO05D007368 2.6e-60 235.7 176 69.3
CiPaw.01G284700 Carya illinoinensis HOM05D005570 ORTHO05D007368 1.0e-59 233.8 167 69.5
Eucgr.K01395 Eucalyptus grandis HOM05D005570 ORTHO05D007368 1.3e-59 233.4 166 68.1
Thhalv10002687m.g Eutrema salsugineum HOM05D005570 ORTHO05D007368 1.3e-59 233.4 173 65.3
TWI36G1338 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 3.8e-59 231.9 143 82.5
AT2G04340 Arabidopsis thaliana HOM05D005570 ORTHO05D007368 4.9e-59 231.5 173 64.2
BcaB06g26780 Brassica carinata HOM05D005570 ORTHO05D007368 4.9e-59 231.5 174 65.5
Aa31LG7G6130 Aethionema arabicum HOM05D005570 ORTHO05D007368 6.5e-59 231.1 162 67.3
AUR62019308 Chenopodium quinoa HOM05D005570 ORTHO05D007368 6.5e-59 231.1 171 67.8
GSVIVG01018573001 Vitis vinifera HOM05D005570 ORTHO05D007368 6.5e-59 231.1 173 64.2
BraA07t28466Z Brassica rapa HOM05D005570 ORTHO05D007368 8.4e-59 230.7 171 66.1
RcHm_v2.0_Chr7g0188821 Rosa chinensis HOM05D005570 ORTHO05D007368 8.4e-59 230.7 170 68.2
Sp3g23170 Schrenkiella parvula HOM05D005570 ORTHO05D007368 8.4e-59 230.7 173 64.2
CARHR102200 Cardamine hirsuta HOM05D005570 ORTHO05D007368 1.1e-58 230.3 173 64.2
Cc02_g29600 Coffea canephora HOM05D005570 ORTHO05D007368 1.1e-58 230.3 175 68.0
Potri.014G169500 Populus trichocarpa HOM05D005570 ORTHO05D007368 1.1e-58 230.3 169 69.8
A07p06720 Brassica napus HOM05D005570 ORTHO05D007368 2.5e-58 229.2 171 65.5
AUR62000128 Chenopodium quinoa HOM05D005570 ORTHO05D007368 2.5e-58 229.2 175 66.9
Migut.H01280 Erythranthe guttata HOM05D005570 ORTHO05D007368 3.2e-58 228.8 173 63.0
ClCG06G018310 Citrullus lanatus HOM05D005570 ORTHO05D007368 4.2e-58 228.4 173 66.5
Actinidia07853 Actinidia chinensis HOM05D005570 ORTHO05D007368 5.5e-58 228.0 168 67.9
VMungo0251G2804 Vigna mungo HOM05D005570 ORTHO05D007368 5.5e-58 228.0 162 71.6
Sabra14G0129400 Salix brachista HOM05D005570 ORTHO05D007368 9.3e-58 227.3 168 69.6
C07p10300 Brassica napus HOM05D005570 ORTHO05D007368 1.6e-57 226.5 171 64.9
BcaC06g35864 Brassica carinata HOM05D005570 ORTHO05D007368 2.1e-57 226.1 171 64.9
BolC7t41480H Brassica oleracea HOM05D005570 ORTHO05D007368 2.1e-57 226.1 171 64.9
Glyma.07G223300 Glycine max HOM05D005570 ORTHO05D007368 4.6e-57 224.9 162 70.4
CsaV3_1G000130 Cucumis sativus L. HOM05D005570 ORTHO05D007368 6.0e-57 224.6 173 65.3
MD14G1148400 Malus domestica HOM05D005570 ORTHO05D007368 6.0e-57 224.6 170 67.6
MD06G1132000 Malus domestica HOM05D005570 ORTHO05D007368 7.9e-57 224.2 175 68.0
Phvul.002G100000 Phaseolus vulgaris HOM05D005570 ORTHO05D007368 1.8e-56 223.0 162 69.1
AL3G42010 Arabidopsis lyrata HOM05D005570 ORTHO05D007368 2.3e-56 222.6 173 62.4
arahy.Tifrunner.gnm1.ann1.18Q938 Arachis hypogaea HOM05D005570 ORTHO05D007368 2.3e-56 222.6 162 66.7
DCAR_008745 Daucus carota HOM05D005570 ORTHO05D007368 2.3e-56 222.6 160 65.6
QL10p000758 Quercus lobata HOM05D005570 ORTHO05D007368 3.9e-56 221.9 163 69.3
Sed0027705 Sechium edule HOM05D005570 ORTHO05D007368 6.7e-56 221.1 173 64.2
FAN18G0853 Fragaria x ananassa HOM05D005570 ORTHO05D007368 1.1e-55 220.3 167 67.1
FvH4_5g09330 Fragaria vesca HOM05D005570 ORTHO05D007368 1.5e-55 219.9 166 66.9
PGR044G2338 Punica granatum HOM05D005570 ORTHO05D007368 1.5e-55 219.9 171 63.2
FAN04G1041 Fragaria x ananassa HOM05D005570 ORTHO05D007368 1.9e-55 219.5 167 66.5
FAN13G2066 Fragaria x ananassa HOM05D005570 ORTHO05D007368 4.3e-55 218.4 167 66.5
PGR031G1532 Punica granatum HOM05D005570 ORTHO05D007368 4.3e-55 218.4 168 64.3
arahy.Tifrunner.gnm1.ann1.66C0B7 Arachis hypogaea HOM05D005570 ORTHO05D007368 5.7e-55 218.0 160 66.9
arahy.Tifrunner.gnm1.ann1.TWVE3E Arachis hypogaea HOM05D005570 ORTHO05D007368 5.7e-55 218.0 160 66.9
TAR374G1095 Trochodendron aralioides HOM05D005570 ORTHO05D007368 9.6e-55 217.2 159 64.8
CSS0039609 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 1.3e-54 216.9 169 64.5
Ca_18776_v3 Cicer arietinum L. HOM05D005570 ORTHO05D007368 1.3e-54 216.9 162 67.3
ECA240G0244 Erigeron canadensis HOM05D005570 ORTHO05D007368 2.1e-54 216.1 141 73.0
arahy.Tifrunner.gnm1.ann1.CPK3HX Arachis hypogaea HOM05D005570 ORTHO05D007368 4.8e-54 214.9 162 66.0
EL10Ac4g10242 Beta vulgaris HOM05D005570 ORTHO05D007368 4.8e-54 214.9 213 54.5
Nn4g22113 Nelumbo nucifera HOM05D005570 ORTHO05D007368 1.8e-53 213.0 156 65.4
Aqoxy2G01347 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 2.6e-52 209.1 172 61.6
Psat7g132520 Pisum sativum HOM05D005570 ORTHO05D007368 5.8e-52 208.0 157 66.9
Lalb_Chr09g0328771 Lupinus albus HOM05D005570 ORTHO05D007368 1.0e-51 207.2 163 64.4
Aqoxy7G00316 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 1.3e-51 206.8 167 64.1
Cpa.g.sc136.41 Carica papaya HOM05D005570 ORTHO05D007368 1.7e-51 206.5 150 70.7
Oeu015172.1 Olea europaea HOM05D005570 ORTHO05D007368 2.9e-51 205.7 140 71.4
PSO063G1837 Papaver somniferum HOM05D005570 ORTHO05D007368 2.9e-51 205.7 176 57.4
MBI14_g24038_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 6.5e-51 204.5 167 62.3
Lj8A137G54 Lonicera japonica HOM05D005570 ORTHO05D007368 1.1e-50 203.8 145 69.0
unitig_26.g9513 Utricularia gibba HOM05D005570 ORTHO05D007368 1.4e-50 203.4 161 59.0
PSO357G0372 Papaver somniferum HOM05D005570 ORTHO05D007368 1.9e-50 203.0 174 57.5
PSO421G0324 Papaver somniferum HOM05D005570 ORTHO05D007368 7.1e-50 201.1 174 55.7
Lj1g0005707 Lotus japonicus HOM05D005570 ORTHO05D007368 2.7e-49 199.1 163 62.6
TPR.G11531 Trifolium pratense HOM05D005570 ORTHO05D007368 2.7e-49 199.1 162 63.6
ATR0751G216 Amborella trichopoda HOM05D005570 ORTHO05D007368 3.5e-49 198.7 171 60.2
PSO063G6961 Papaver somniferum HOM05D005570 ORTHO05D007368 3.5e-49 198.7 176 55.7
Medtr4g083580 Medicago truncatula HOM05D005570 ORTHO05D007368 4.6e-49 198.4 164 63.4
MELO3C026167.2 Cucumis melo HOM05D005570 ORTHO05D007368 7.9e-49 197.6 237 47.7
HPP92_013643 Vanilla planifolia HOM05D005570 ORTHO05D007368 5.7e-47 191.4 169 56.2
Ah.12g059860 Amaranthus hybridus HOM05D005570 ORTHO05D007368 2.2e-46 189.5 154 63.6
CANSAT01G1761 Cannabis sativa HOM05D005570 ORTHO05D007368 1.4e-45 186.8 156 62.2
SGA_v2.0_scaffold317G48443 Striga asiatica HOM05D005570 ORTHO05D007368 1.8e-45 186.4 182 56.6
SGA_v2.0_scaffold96G29016 Striga asiatica HOM05D005570 ORTHO05D007368 4.5e-44 181.8 131 70.2
vmacro09474 Vaccinium macrocarpon HOM05D005570 ORTHO05D007368 6.5e-43 177.9 155 59.4
TPR.G34081 Trifolium pratense HOM05D005570 ORTHO05D007368 1.2e-41 173.7 159 57.9
Os09g0478400 Oryza sativa ssp. japonica HOM05D005570 ORTHO05D007368 1.6e-41 173.3 147 59.2
Zm00001eb101470 Zea mays HOM05D005570 ORTHO05D007368 1.6e-41 173.3 157 54.8
SGA_v2.0_scaffold317G48460 Striga asiatica HOM05D005570 ORTHO05D007368 2.5e-39 166.0 132 65.9
CDE10G0507 Ceratophyllum demersum HOM05D005570 ORTHO05D007368 7.4e-39 164.5 139 59.0
MBI14_g13534_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 2.8e-38 162.5 109 69.7
PSO421G0119 Papaver somniferum HOM05D005570 ORTHO05D007368 4.8e-38 161.8 136 60.3
Hund21535 Selenicereus undatus HOM05D005570 ORTHO05D007368 2.7e-33 146.0 91 74.7
Lsat_1_v5_gn_4_24381 Lactuca sativa HOM05D005570 ORTHO05D007368 3.6e-33 145.6 103 69.9
SEGI_08222 Sequoiadendron giganteum HOM05D005570 ORTHO05D007368 2.3e-32 142.9 143 53.1
Rhsim04G0030300 Rhododendron simsii HOM05D005570 ORTHO05D007368 2.0e-31 139.8 85 75.3
SGA_v2.0_scaffold28G12060 Striga asiatica HOM05D005570 ORTHO05D007368 5.7e-31 138.3 109 65.1
Rhsim04G0030400 Rhododendron simsii HOM05D005570 ORTHO05D007368 3.1e-29 132.5 78 76.9
SGA_v2.0_scaffold2G00813 Striga asiatica HOM05D005570 ORTHO05D007368 5.0e-27 125.2 125 57.6
Gohir.D01G037901 Gossypium hirsutum HOM05D005570 ORTHO05D007368 1.5e-26 123.6 80 73.8
Mapoly0084s0063 Marchantia polymorpha HOM05D005570 ORTHO05D007368 1.5e-26 123.6 139 46.0
SGA_v2.0_scaffold323G48653 Striga asiatica HOM05D005570 ORTHO05D007368 1.2e-25 120.6 123 54.5
Glyma.20G022600 Glycine max HOM05D005570 ORTHO05D007368 1.1e-23 114.0 98 65.3
Pp3c22_13450 Physcomitrium patens HOM05D005570 ORTHO05D007368 3.3e-23 112.5 119 46.2
Solyc07g045260.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 2.2e-22 109.8 66 75.8
Potri.001G241100 Populus trichocarpa HOM05D005570 ORTHO05D007368 7.7e-20 101.3 83 67.5
Oeu031101.2 Olea europaea HOM05D005570 ORTHO05D007368 3.2e-18 95.9 55 78.2
Hund30621 Selenicereus undatus HOM05D005570 ORTHO05D007368 3.2e-18 95.9 84 59.5
Hund30622 Selenicereus undatus HOM05D005570 ORTHO05D007368 3.2e-18 95.9 84 59.5
Potri.014G169750 Populus trichocarpa HOM05D005570 ORTHO05D007368 4.7e-17 92.0 54 79.6
Lsat_1_v5_gn_4_72161 Lactuca sativa HOM05D005570 ORTHO05D007368 4.0e-16 89.0 53 77.4
SGA_v2.0_scaffold317G48459 Striga asiatica HOM05D005570 ORTHO05D007368 3.4e-15 85.9 58 72.4
Potri.001G240904 Populus trichocarpa HOM05D005570 ORTHO05D007368 9.1e-13 77.8 53 67.9
CBR_g57071 Chara braunii HOM05D001740 ORTHO05D001468 2.0e-12 76.6 85 38.8


User provided reference genes

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