Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 9.0e-204 713.4 362 100.0
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 1.1e-156 557.0 353 81.6
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 7.2e-153 544.3 359 76.6
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 1.2e-152 543.5 355 78.6
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 2.1e-152 542.7 362 78.2
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 4.7e-152 541.6 354 77.1
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 6.1e-152 541.2 366 76.5
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 6.1e-152 541.2 305 87.5
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 2.3e-151 539.3 353 77.6
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 4.0e-151 538.5 361 75.3
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 5.7e-150 534.6 353 77.9
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 2.8e-149 532.3 315 83.8
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 3.7e-149 531.9 353 75.9
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 1.4e-148 530.0 311 83.6
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 1.2e-147 526.9 305 85.2
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 1.2e-147 526.9 344 78.2
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 1.6e-147 526.6 359 76.3
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 2.7e-147 525.8 301 86.0
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 3.8e-146 521.9 351 76.4
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 5.0e-146 521.5 307 81.1
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 8.5e-146 520.8 315 80.0
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 1.1e-145 520.4 309 84.5
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 1.1e-145 520.4 306 83.7
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 1.5e-145 520.0 380 72.4
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 4.2e-145 518.5 307 80.1
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 4.2e-145 518.5 353 75.4
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 9.4e-145 517.3 348 73.9
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 9.4e-145 517.3 315 78.1
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 1.2e-144 516.9 303 84.2
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 1.2e-144 516.9 315 79.4
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 1.2e-144 516.9 315 78.1
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 3.6e-144 515.4 358 76.3
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 1.0e-143 513.8 309 81.9
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 5.2e-143 511.5 371 71.7
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 6.8e-143 511.1 342 74.6
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 6.8e-143 511.1 355 72.7
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 6.8e-143 511.1 340 76.5
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 2.6e-142 509.2 357 74.5
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 2.6e-142 509.2 342 75.4
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 4.4e-142 508.4 350 72.3
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 7.5e-142 507.7 315 79.4
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 1.3e-141 506.9 340 75.9
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 1.7e-141 506.5 315 79.4
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 4.8e-141 505.0 347 73.5
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 6.3e-141 504.6 339 74.6
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 6.3e-141 504.6 288 83.7
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 3.1e-140 502.3 297 82.2
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 5.4e-140 501.5 341 73.9
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 5.4e-140 501.5 339 73.5
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 7.0e-140 501.1 339 74.0
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 7.0e-140 501.1 348 74.7
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 7.0e-140 501.1 313 79.6
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 1.2e-139 500.4 315 77.1
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 1.6e-139 500.0 307 80.8
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 7.7e-139 497.7 305 79.3
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 7.7e-139 497.7 313 77.6
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 1.0e-138 497.3 338 74.6
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 1.0e-138 497.3 347 72.0
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 2.2e-138 496.1 352 72.4
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 2.9e-138 495.7 318 76.4
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 2.9e-138 495.7 371 69.0
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 3.8e-138 495.4 303 79.5
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 8.5e-138 494.2 325 76.0
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 1.6e-136 490.0 310 80.3
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 6.1e-136 488.0 312 75.6
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 8.0e-136 487.6 306 77.1
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 1.0e-135 487.3 306 78.1
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 1.4e-135 486.9 306 77.8
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 2.3e-135 486.1 351 71.8
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 5.2e-135 485.0 353 70.5
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 5.2e-135 485.0 353 70.5
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 6.8e-135 484.6 324 75.0
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 7.5e-134 481.1 339 72.6
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 1.7e-133 479.9 307 77.2
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 6.3e-133 478.0 309 76.4
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 6.3e-133 478.0 317 73.5
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 5.4e-132 474.9 316 76.3
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 9.2e-132 474.2 307 76.5
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 3.5e-131 472.2 316 73.1
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 7.8e-131 471.1 361 69.3
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 7.3e-129 464.5 358 69.0
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 5.2e-127 458.4 363 67.2
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 3.4e-126 455.7 368 67.4
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 5.9e-123 444.9 276 79.3
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 1.7e-122 443.4 275 79.3
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 1.4e-119 433.7 272 78.3
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 3.2e-116 422.5 279 75.6
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 4.6e-115 418.7 278 73.7
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 2.2e-109 399.8 307 64.8
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 1.1e-108 397.5 269 75.1
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 1.4e-108 397.1 272 74.3
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 2.1e-107 393.3 317 63.1
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 2.5e-105 386.3 268 73.9
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 6.2e-104 381.7 236 78.4
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 4.0e-103 379.0 300 61.3
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 4.9e-101 372.1 315 66.3
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 8.6e-98 361.3 335 57.0
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 1.6e-96 357.1 215 79.5
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 2.1e-96 356.7 246 71.5
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 2.4e-95 353.2 205 83.9
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 2.0e-94 350.1 303 62.7
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 3.8e-93 345.9 350 56.0
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 2.7e-91 339.7 200 82.0
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 1.5e-86 323.9 197 84.3
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 8.4e-85 318.2 311 56.9
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 3.2e-84 316.2 352 54.0
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.2e-83 314.3 200 76.0
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 1.1e-81 307.8 346 50.3
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 1.9e-73 280.4 216 64.4
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 2.1e-67 260.4 148 83.1
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 1.0e-61 241.5 203 65.0
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 1.2e-59 234.6 286 45.8
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 1.5e-57 227.6 132 82.6
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 8.2e-56 221.9 247 52.2
Hma1.2p1_0708F.1_g207140 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 5.0e-53 212.6 119 87.4
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 1.4e-52 211.1 120 84.2
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 2.6e-49 200.3 196 57.1
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 7.4e-49 198.7 138 70.3
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 1.1e-47 194.9 142 66.2
C07p20870 Brassica napus HOM05D005534 ORTHO05D006642 4.5e-46 189.5 126 76.2
BolC7t42620H Brassica oleracea HOM05D005534 ORTHO05D006642 4.5e-46 189.5 126 76.2
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 5.9e-46 189.1 331 35.6
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 2.9e-45 186.8 120 72.5
BcaC06g34996 Brassica carinata HOM05D005534 ORTHO05D006642 4.7e-43 179.5 122 73.8
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.8e-42 177.6 160 61.2
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 5.3e-39 166.0 157 63.1
Lj1A297G57 Lonicera japonica HOM05D005534 ORTHO05D006642 3.0e-34 150.2 91 81.3
FAN08G1090 Fragaria x ananassa HOM05D005534 ORTHO05D006642 6.3e-24 115.9 105 58.1
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 8.3e-24 115.5 116 55.2
SEGI_02632 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 1.2e-22 111.7 67 76.1
unitig_899.g15651 Utricularia gibba HOM05D005534 ORTHO05D006642 1.8e-18 97.8 55 81.8
A07p14200 Brassica napus HOM05D002040 ORTHO05D006642 8.3e-16 89.0 81 58.0
HanXRQChr11g0339001 Helianthus annuus HOM05D005534 ORTHO05D006642 4.5e-14 83.2 55 72.7
MCO12G480 Micromonas commoda HOM05D005534 ORTHO05D006642 2.3e-13 80.9 110 42.7
CAN.G1062.3 Capsicum annuum HOM05D005534 ORTHO05D006642 5.0e-13 79.7 152 37.5
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 6.6e-13 79.3 57 64.9
Lj1A290G37 Lonicera japonica HOM05D005534 ORTHO05D006642 3.3e-12 77.0 60 68.3
Lj1E297T0 Lonicera japonica HOM05D005534 ORTHO05D006642 2.8e-11 73.9 42 85.7
HPP92_005611 Vanilla planifolia HOM05D000010 ORTHO05D429468 2.6e-09 67.4 48 64.6
Lj1A290T43 Lonicera japonica HOM05D005534 ORTHO05D006642 4.9e-08 63.2 40 70.0
BraA07t29177Z Brassica rapa HOM05D005534 ORTHO05D006642 6.4e-08 62.8 140 32.9
TPR.G30727 Trifolium pratense HOM05D005534 ORTHO05D006642 1.1e-07 62.0 49 59.2
Lsat_1_v5_gn_4_32401 Lactuca sativa HOM05D000240 ORTHO05D001153 1.2e-06 58.5 42 66.7


User provided reference genes

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