Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 4.5e-250 867.5 434 100.0
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 2.8e-196 688.7 434 77.0
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 3.7e-196 688.3 433 77.6
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 7.7e-194 680.6 434 76.5
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 6.8e-190 667.5 434 75.8
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 4.4e-189 664.8 434 74.2
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 1.7e-188 662.9 435 75.2
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 1.4e-187 659.8 430 74.4
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 1.4e-187 659.8 434 74.0
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 3.1e-187 658.7 434 74.9
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 5.4e-187 657.9 419 76.8
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 5.4e-187 657.9 419 76.8
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 5.4e-187 657.9 434 74.2
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 5.9e-186 654.4 434 74.9
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 2.3e-185 652.5 419 75.7
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 3.8e-185 651.7 435 73.1
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 3.3e-184 648.7 419 75.9
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 7.2e-184 647.5 434 73.7
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 1.2e-183 646.7 436 72.9
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 8.0e-183 644.0 435 73.8
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 1.4e-182 643.3 436 72.7
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 3.0e-182 642.1 473 68.9
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 4.0e-182 641.7 436 71.8
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 5.2e-182 641.3 435 72.4
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 6.8e-182 641.0 439 73.1
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 6.8e-182 641.0 435 72.4
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 8.9e-182 640.6 432 73.6
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 1.5e-181 639.8 433 71.8
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 2.6e-181 639.0 430 73.5
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 9.8e-181 637.1 436 72.2
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 8.3e-180 634.0 449 70.4
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 8.3e-180 634.0 433 71.4
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.4e-179 633.3 436 72.0
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.4e-179 633.3 436 72.0
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 4.1e-179 631.7 432 71.3
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 5.4e-179 631.3 433 70.9
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 9.2e-179 630.6 430 71.2
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 1.6e-178 629.8 436 71.3
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 1.6e-178 629.8 436 70.2
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 1.6e-178 629.8 434 71.4
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 2.0e-178 629.4 427 71.9
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 2.7e-178 629.0 431 72.2
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 4.5e-178 628.2 436 71.6
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 1.0e-177 627.1 443 70.0
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 1.7e-177 626.3 463 70.0
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 1.7e-177 626.3 427 71.4
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 2.9e-177 625.5 416 71.9
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 3.9e-177 625.2 435 70.8
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 8.6e-177 624.0 434 71.7
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 1.9e-176 622.9 435 69.2
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 3.3e-176 622.1 434 71.2
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 7.3e-176 620.9 434 71.4
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 1.2e-175 620.2 434 71.7
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 1.2e-175 620.2 419 71.6
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 2.1e-175 619.4 419 72.6
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 3.6e-175 618.6 419 70.9
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 8.0e-175 617.5 432 68.3
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 8.0e-175 617.5 432 70.4
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.8e-174 616.3 432 68.5
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 2.3e-174 615.9 478 65.3
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 3.1e-174 615.5 423 69.3
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 1.2e-173 613.6 419 69.0
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 1.2e-173 613.6 443 68.4
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 2.0e-173 612.8 436 69.5
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 1.3e-172 610.1 435 68.5
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 1.7e-172 609.8 431 70.8
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 2.2e-172 609.4 436 68.8
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 8.3e-172 607.4 437 67.7
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 1.1e-171 607.1 498 62.2
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.4e-171 606.7 436 68.6
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 2.4e-171 605.9 437 68.9
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 3.2e-171 605.5 427 68.9
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 3.5e-170 602.1 407 74.2
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 1.3e-169 600.1 414 72.5
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 6.2e-167 591.3 429 69.7
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 2.0e-165 586.3 435 67.4
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 4.4e-165 585.1 446 66.8
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 9.2e-163 577.4 439 67.2
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 1.5e-160 570.1 392 68.9
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 5.6e-160 568.2 427 67.2
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 7.3e-160 567.8 406 70.2
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 1.2e-159 567.0 438 63.2
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 7.1e-155 551.2 432 63.2
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 1.2e-154 550.4 413 67.1
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 2.1e-154 549.7 425 66.1
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 2.1e-154 549.7 380 68.9
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 8.6e-153 544.3 434 64.1
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 2.4e-150 536.2 451 60.3
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 8.9e-150 534.3 390 66.2
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 2.7e-146 522.7 329 78.4
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 1.3e-140 503.8 430 60.5
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 1.3e-140 503.8 409 63.6
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 2.7e-138 496.1 328 73.2
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 2.7e-138 496.1 326 73.9
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 4.3e-136 488.8 433 58.7
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 1.5e-133 480.3 337 71.5
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 2.0e-133 479.9 417 58.8
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 6.4e-132 474.9 335 70.1
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 2.1e-130 469.9 369 62.3
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 2.7e-130 469.5 419 54.4
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 7.9e-130 468.0 364 63.2
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 1.8e-126 456.8 337 68.5
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 4.5e-125 452.2 329 66.6
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 2.2e-124 449.9 447 55.0
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 7.1e-123 444.9 430 54.9
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 3.9e-121 439.1 416 53.8
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 1.3e-116 424.1 407 53.8
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 4.6e-114 415.6 434 52.5
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 2.3e-113 413.3 312 65.4
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 3.3e-112 409.5 343 62.4
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 8.8e-105 384.8 576 39.1
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 7.4e-104 381.7 373 56.3
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.1e-102 377.9 283 66.8
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 2.4e-102 376.7 289 64.7
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 1.5e-96 357.5 359 55.7
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 1.7e-95 354.0 270 64.4
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 3.7e-95 352.8 281 64.4
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.3e-87 327.8 248 66.1
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 2.1e-82 310.5 422 41.9
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 6.1e-82 308.9 354 50.0
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 2.3e-81 307.0 231 66.7
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 4.0e-81 306.2 206 70.9
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 6.3e-79 298.9 421 43.0
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 7.0e-78 295.4 430 40.9
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 1.2e-77 294.7 396 44.4
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 1.4e-70 271.2 287 51.9
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 6.6e-68 262.3 230 57.0
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 2.3e-65 253.8 479 35.1
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 5.2e-65 252.7 356 42.7
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.5e-64 251.1 149 79.9
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 2.0e-64 250.8 151 79.5
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 4.4e-64 249.6 147 81.0
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 4.1e-62 243.0 147 79.6
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 8.6e-60 235.3 439 36.0
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 2.3e-57 227.3 417 37.2
TAR160G0002 Trochodendron aralioides HOM05D004598 ORTHO05D005550 1.4e-54 218.0 181 64.1
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 4.1e-54 216.5 258 51.6
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 7.0e-54 215.7 148 73.0
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 9.2e-54 215.3 148 70.9
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 1.6e-50 204.5 141 66.0
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 9.2e-46 188.7 115 78.3
Lj2E933T1 Lonicera japonica HOM05D004598 ORTHO05D005550 2.3e-44 184.1 111 79.3
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.9e-31 140.6 89 73.0
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.9e-31 140.6 89 73.0
BcaB01g04740 Brassica carinata HOM05D004598 ORTHO05D005550 5.4e-30 136.3 128 60.9
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 4.8e-26 123.2 85 70.6
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 1.8e-25 121.3 424 27.1
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 1.1e-22 112.1 62 83.9
SHI44717 Sapria himalayana HOM05D004598 ORTHO05D005550 3.1e-17 94.0 111 51.4
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 4.9e-15 86.7 331 26.9
CAN.G890.17 Capsicum annuum HOM05D004598 ORTHO05D005550 1.6e-13 81.6 58 63.8
Medtr6g051670 Medicago truncatula HOM05D004598 ORTHO05D005550 3.7e-10 70.5 47 66.0
SHI39037 Sapria himalayana HOM05D004598 ORTHO05D005550 1.1e-09 68.9 52 59.6
SHI39035 Sapria himalayana HOM05D004598 ORTHO05D005550 1.4e-09 68.6 50 68.0
SHI53813 Sapria himalayana HOM05D004598 ORTHO05D005550 2.4e-09 67.8 52 57.7
SHI53927 Sapria himalayana HOM05D004598 ORTHO05D005550 3.1e-09 67.4 52 57.7
SHI47796 Sapria himalayana HOM05D004598 ORTHO05D005550 1.2e-08 65.5 50 62.0
SHI41529 Sapria himalayana HOM05D004598 ORTHO05D005550 4.2e-06 57.0 52 51.9


User provided reference genes

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