Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.7e-202 709.1 364 100.0
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 5.0e-170 601.3 364 88.5
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 7.2e-169 597.4 364 86.8
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 3.3e-166 588.6 375 83.5
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 1.3e-138 496.9 365 72.6
TWI32G0924 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.7e-138 496.5 308 86.7
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 6.6e-138 494.6 368 72.8
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 3.4e-134 482.3 365 71.2
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 6.6e-130 468.0 345 71.6
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 5.2e-127 458.4 343 71.1
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 8.9e-127 457.6 367 68.1
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 4.9e-125 451.8 367 68.4
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 1.9e-124 449.9 367 68.1
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 2.7e-123 446.0 367 67.8
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 6.0e-123 444.9 368 66.3
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 7.8e-123 444.5 370 69.2
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 2.8e-120 436.0 344 68.9
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 2.6e-118 429.5 368 65.8
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 6.4e-117 424.9 370 67.0
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 1.1e-116 424.1 372 64.8
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.4e-116 423.7 370 66.8
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 2.4e-116 422.9 393 61.6
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 2.4e-116 422.9 370 67.0
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 2.4e-116 422.9 367 66.8
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 2.4e-116 422.9 368 64.7
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 2.4e-116 422.9 368 62.5
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 1.7e-114 416.8 376 62.0
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 2.3e-114 416.4 370 66.5
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 2.3e-114 416.4 343 67.1
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 5.1e-114 415.2 348 66.1
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 1.1e-113 414.1 344 66.3
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 1.1e-113 414.1 370 63.2
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 3.3e-113 412.5 415 59.3
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 1.6e-112 410.2 366 64.2
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 4.8e-112 408.7 414 58.5
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 8.1e-112 407.9 366 61.2
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 1.4e-111 407.1 369 62.6
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 1.8e-111 406.8 369 63.7
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 5.8e-110 401.7 368 61.1
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 7.6e-110 401.4 345 63.8
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 9.9e-110 401.0 346 65.0
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 1.4e-108 397.1 369 62.1
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 7.1e-108 394.8 369 62.6
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 6.0e-107 391.7 348 65.5
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 6.6e-106 388.3 369 61.0
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 6.6e-106 388.3 368 60.3
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 8.7e-106 387.9 345 64.1
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 8.7e-106 387.9 402 57.5
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 1.9e-105 386.7 366 61.7
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 4.3e-105 385.6 368 61.1
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 5.6e-105 385.2 429 53.8
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 1.3e-104 384.0 369 61.0
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 1.6e-104 383.6 345 63.2
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 2.1e-104 383.3 377 62.1
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 1.1e-103 380.9 363 61.2
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 1.4e-103 380.6 352 59.7
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 2.4e-103 379.8 352 62.5
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 6.9e-103 378.3 345 60.3
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 2.6e-102 376.3 346 61.8
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 7.6e-102 374.8 412 54.1
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 1.7e-101 373.6 375 60.8
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 6.4e-101 371.7 366 58.2
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 1.4e-100 370.5 368 59.2
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 1.9e-100 370.2 367 58.6
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 2.4e-100 369.8 344 61.6
Glyma.05G241800 Glycine max HOM05D004432 ORTHO05D005427 7.1e-100 368.2 366 59.8
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 1.6e-99 367.1 373 60.3
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 3.5e-99 365.9 344 60.8
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 4.6e-99 365.5 372 58.1
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 1.8e-98 363.6 378 58.2
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 2.3e-98 363.2 389 56.8
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 3.9e-98 362.5 351 60.4
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 6.7e-98 361.7 369 59.6
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 1.1e-97 360.9 351 60.1
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 1.6e-96 357.1 346 59.0
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 2.8e-96 356.3 368 56.0
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 3.7e-96 355.9 352 60.8
Cfa001128 Carpinus fangiana HOM05D004432 ORTHO05D005427 8.1e-96 354.8 325 61.2
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 2.4e-95 353.2 347 57.3
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 4.0e-95 352.4 369 58.3
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 2.6e-94 349.7 370 57.6
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 4.5e-94 349.0 345 58.6
Sabra01G0131600 Salix brachista HOM05D004432 ORTHO05D005427 5.8e-94 348.6 367 57.8
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 1.3e-93 347.4 369 56.1
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 1.3e-93 347.4 369 57.2
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 6.4e-93 345.1 369 57.2
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 1.9e-92 343.6 364 58.2
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 6.0e-91 338.6 351 58.4
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 1.0e-90 337.8 344 57.3
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 8.7e-90 334.7 372 56.2
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 1.5e-89 334.0 347 56.2
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 5.7e-89 332.0 351 54.7
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 7.4e-89 331.6 345 56.8
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 6.2e-88 328.6 272 63.6
Lj4g0008002 Lotus japonicus HOM05D004432 ORTHO05D005427 1.2e-86 324.3 350 56.3
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 5.8e-86 322.0 351 55.6
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 2.2e-85 320.1 370 55.4
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 4.9e-85 318.9 368 55.4
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 2.7e-83 313.2 346 54.6
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 4.6e-83 312.4 329 57.8
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 1.3e-82 310.8 369 54.2
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 3.0e-82 309.7 368 53.3
BraA09t39051Z Brassica rapa HOM05D004432 ORTHO05D005427 6.7e-82 308.5 370 53.0
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 2.5e-81 306.6 345 53.3
AUR62017849 Chenopodium quinoa HOM05D004432 ORTHO05D005427 3.3e-81 306.2 411 48.7
BolC5t31752H Brassica oleracea HOM05D004432 ORTHO05D005427 4.3e-81 305.8 371 53.4
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 4.3e-81 305.8 346 54.3
EL10Ac6g15345 Beta vulgaris HOM05D004432 ORTHO05D005427 2.2e-80 303.5 376 52.9
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 6.3e-80 302.0 343 53.6
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 1.1e-79 301.2 351 54.7
ATR0568G227 Amborella trichopoda HOM05D004432 ORTHO05D005427 5.3e-79 298.9 384 51.6
BcaC05g27130 Brassica carinata HOM05D004432 ORTHO05D005427 6.9e-79 298.5 371 52.6
C05p30150 Brassica napus HOM05D004432 ORTHO05D005427 6.9e-79 298.5 371 52.6
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 1.0e-77 294.7 274 62.0
Hund04373 Selenicereus undatus HOM05D004432 ORTHO05D005427 2.9e-77 293.1 496 42.9
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 2.5e-76 290.0 368 52.7
Ah.03g147620 Amaranthus hybridus HOM05D004432 ORTHO05D005427 4.2e-76 289.3 329 55.0
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 7.2e-76 288.5 349 53.3
AUR62003535 Chenopodium quinoa HOM05D004432 ORTHO05D005427 4.6e-75 285.8 350 51.1
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 1.1e-73 281.2 348 52.6
SEGI_00495 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 3.7e-72 276.2 389 47.3
A09p35240 Brassica napus HOM05D004432 ORTHO05D005427 6.3e-72 275.4 349 51.0
Haze_05275 Corylus avellana HOM05D004432 ORTHO05D005427 6.5e-69 265.4 271 56.8
BraA08t33081Z Brassica rapa HOM05D004432 ORTHO05D005427 1.1e-68 264.6 360 50.0
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 2.5e-68 263.5 475 43.2
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 2.6e-65 253.4 278 52.9
Mapoly0070s0095 Marchantia polymorpha HOM05D004432 ORTHO05D005427 2.4e-63 246.9 390 43.1
Dinv23013 Davidia involucrata HOM05D004432 ORTHO05D005427 3.1e-63 246.5 249 59.8
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis HOM05D004432 ORTHO05D005427 4.5e-62 242.7 402 43.3
Pp3c22_1400 Physcomitrium patens HOM05D004432 ORTHO05D005427 2.2e-56 223.8 398 39.9
Rhsim13G0133800 Rhododendron simsii HOM05D004432 ORTHO05D005427 3.1e-55 219.9 316 48.7
RhsimUnG0176800 Rhododendron simsii HOM05D004432 ORTHO05D005427 3.1e-55 219.9 316 48.7
CiPaw.09G137600 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.6e-54 217.6 188 69.1
CiPaw.09G137500 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.2e-51 208.0 159 68.6
Atru.chr10.360 Acer truncatum HOM05D004432 ORTHO05D005427 1.7e-48 197.6 218 55.0
SMO239G0124 Selaginella moellendorffii HOM05D004432 ORTHO05D005427 3.1e-47 193.4 373 40.8
Zm00001eb104750 Zea mays HOM05D004432 ORTHO05D005427 2.2e-45 187.2 316 45.3
SEGI_03989 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 8.8e-42 175.3 215 51.2
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 9.8e-41 171.8 664 28.9
Haze_05262 Corylus avellana HOM05D004432 ORTHO05D005427 1.1e-39 168.3 111 74.8
Rhsim13G0133700 Rhododendron simsii HOM05D004432 ORTHO05D005427 3.8e-37 159.8 88 84.1
RhsimUnG0176700 Rhododendron simsii HOM05D004432 ORTHO05D005427 3.8e-37 159.8 88 84.1
CARHR030510 Cardamine hirsuta HOM05D004432 ORTHO05D005427 1.9e-36 157.5 220 50.9
CBR_g1074 Chara braunii HOM05D004432 ORTHO05D005427 4.2e-36 156.4 143 55.2
Dinv23014 Davidia involucrata HOM05D004432 ORTHO05D005427 4.0e-34 149.8 86 81.4
Nitab4.5_0004903g0050 Nicotiana tabacum HOM05D004432 ORTHO05D005427 6.3e-32 142.5 229 42.8
SEGI_09071 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 1.8e-26 124.4 94 71.3
Dinv01000 Davidia involucrata HOM05D004432 ORTHO05D005427 6.4e-24 115.9 186 42.5
Aqoxy1G01395 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 4.6e-22 109.8 367 30.0
Pp3c19_17160 Physcomitrium patens HOM05D004432 ORTHO05D005427 2.5e-20 104.0 137 51.8
Sopen12g027920 Solanum pennellii HOM05D004432 ORTHO05D005427 2.1e-19 100.9 62 75.8
Cfa025961 Carpinus fangiana HOM05D004432 ORTHO05D005427 1.1e-18 98.6 82 51.2
Cre06.g305200 Chlamydomonas reinhardtii HOM05D004432 ORTHO05D005427 3.1e-18 97.1 90 51.1
MCO08G042 Micromonas commoda HOM05D004432 ORTHO05D005427 9.8e-17 92.0 77 59.7
GSVIVG01015874001 Vitis vinifera HOM05D004432 ORTHO05D005427 1.4e-15 88.2 58 67.2
CAN.G958.2 Capsicum annuum HOM05D004432 ORTHO05D005427 3.5e-14 83.6 76 52.6
TWI15G0530 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 4.0e-10 70.1 45 77.8
Lj1g0003853 Lotus japonicus HOM05D004432 ORTHO05D005427 7.6e-09 65.9 62 54.8
Psat6g089360 Pisum sativum HOM05D004432 ORTHO05D005427 9.9e-09 65.5 101 46.5
Psat7g229080 Pisum sativum HOM05D004432 ORTHO05D005427 2.1e-06 57.8 74 44.6
AUR62036780 Chenopodium quinoa HOM05D056044 ORTHO05D137976 6.0e-06 56.2 57 49.1


User provided reference genes

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