Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 2062.7 1068 100.0
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1909.0 1077 91.9
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 0.0e+00 1728.0 1077 83.3
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 0.0e+00 1722.2 1075 82.6
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 0.0e+00 1713.7 1080 81.9
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 0.0e+00 1711.4 1077 82.4
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 0.0e+00 1710.7 1088 81.3
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 0.0e+00 1704.1 1076 82.1
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1703.7 1077 82.2
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 0.0e+00 1703.3 1079 82.0
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1701.8 1077 81.6
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1689.9 1077 82.3
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 0.0e+00 1689.1 1079 81.6
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 0.0e+00 1685.6 1077 80.5
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 0.0e+00 1682.5 1077 81.3
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 0.0e+00 1682.2 1077 81.2
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1680.2 1077 81.6
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 0.0e+00 1672.1 1077 80.3
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1661.4 1077 79.9
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 0.0e+00 1655.2 1080 79.5
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1649.8 1077 79.3
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 0.0e+00 1649.8 1077 78.9
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 0.0e+00 1649.4 1075 80.1
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1645.2 1080 79.2
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1642.5 1075 79.3
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 0.0e+00 1642.5 1075 78.7
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 0.0e+00 1637.1 1048 80.6
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1630.2 1032 82.0
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1628.2 1087 78.3
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 0.0e+00 1622.1 1075 78.7
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 0.0e+00 1617.4 1080 77.3
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1611.7 1077 78.1
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1609.7 1072 77.5
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 0.0e+00 1609.3 1077 76.4
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1609.0 1078 78.2
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 0.0e+00 1606.7 1080 77.1
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1606.3 1081 77.9
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 0.0e+00 1604.3 1075 78.0
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1600.1 1078 77.7
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1599.3 1075 77.9
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 0.0e+00 1597.8 1075 77.7
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1594.3 1075 77.3
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 0.0e+00 1587.8 1076 76.1
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1578.9 1082 76.2
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 0.0e+00 1572.4 1091 75.3
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1568.5 1082 76.2
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 0.0e+00 1564.7 1077 75.8
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1562.4 1078 75.1
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 0.0e+00 1560.0 1079 74.3
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 0.0e+00 1559.3 1077 74.7
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1553.9 1152 72.1
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 0.0e+00 1526.5 1099 73.5
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 0.0e+00 1523.5 1075 75.4
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1518.8 1102 73.4
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 0.0e+00 1517.7 1083 74.1
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1515.4 1133 73.9
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 0.0e+00 1509.6 1077 72.9
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1508.0 1179 71.2
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 0.0e+00 1507.7 1077 72.9
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 0.0e+00 1504.2 1077 73.0
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 0.0e+00 1493.0 1077 72.5
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 0.0e+00 1482.2 1077 72.1
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 0.0e+00 1481.1 1093 71.1
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1478.0 1093 71.0
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1477.6 1093 71.0
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1476.5 1078 71.5
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 0.0e+00 1476.5 1082 71.1
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 0.0e+00 1476.1 1143 71.0
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1460.3 1075 73.1
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1458.4 1097 69.7
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1458.4 1112 69.3
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 0.0e+00 1454.1 1077 71.4
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1451.4 1069 71.8
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1450.6 1078 70.2
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1448.3 1112 68.5
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 0.0e+00 1448.3 991 76.4
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1445.6 1113 70.3
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 0.0e+00 1441.4 1002 75.4
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1436.4 1065 70.6
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1432.9 1097 69.2
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1431.8 1097 68.7
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1431.8 1077 70.6
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1427.2 1065 70.1
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1420.2 947 77.8
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1419.4 1077 70.4
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1411.7 1097 68.6
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1409.8 1077 69.0
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1408.7 1078 70.0
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1399.4 1094 69.4
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1396.3 1117 68.2
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1385.5 1066 70.5
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 0.0e+00 1383.6 1043 70.6
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 0.0e+00 1381.7 1082 68.0
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 0.0e+00 1364.7 1108 65.9
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1343.9 1062 69.1
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 0.0e+00 1337.0 1028 68.8
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 0.0e+00 1332.0 1077 64.9
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1330.9 1181 64.7
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 0.0e+00 1326.2 1078 66.6
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 0.0e+00 1303.5 1072 63.8
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 0.0e+00 1303.5 1078 65.0
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 0.0e+00 1279.6 881 76.7
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 0.0e+00 1263.4 1263 58.2
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 0.0e+00 1255.4 1068 65.8
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 0.0e+00 1210.3 744 83.9
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 0.0e+00 1203.0 1080 61.8
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1174.1 917 69.8
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 0.0e+00 1143.6 908 65.7
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1087.4 980 63.3
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 1.5e-311 1072.8 744 77.0
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 5.6e-294 1014.6 1079 53.0
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 4.0e-292 1008.4 1094 51.8
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 1.6e-280 969.9 850 63.6
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 5.6e-278 961.4 631 79.7
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.3e-266 923.7 1094 49.3
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 6.0e-256 888.3 776 65.2
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.5e-254 883.6 1088 47.3
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 1.6e-245 853.6 1063 46.3
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 3.3e-230 802.7 572 76.2
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 1.6e-221 773.9 515 75.9
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 2.9e-218 763.1 566 70.7
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 2.6e-214 750.0 573 71.4
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 9.1e-212 741.5 708 58.5
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 2.9e-210 736.5 587 69.0
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.1e-204 718.0 844 52.8
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 9.4e-201 704.9 533 71.9
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 2.2e-189 667.2 807 48.8
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 1.8e-188 664.1 1224 36.6
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 4.4e-174 616.3 428 74.1
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 2.2e-165 587.4 431 72.6
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 8.3e-157 558.9 376 78.5
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.6e-139 501.5 394 66.8
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 1.5e-137 495.0 348 73.6
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 8.7e-130 469.2 350 73.1
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 4.8e-128 463.4 359 69.9
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 1.4e-124 451.8 320 74.7
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 3.0e-122 444.1 366 66.7
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 9.3e-108 396.0 280 72.9
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 9.3e-108 396.0 270 78.1
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 7.7e-94 349.7 370 54.1
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 1.9e-84 318.5 228 72.4
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 1.3e-77 295.8 178 83.1
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 2.0e-70 271.9 194 76.8
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 8.3e-64 250.0 143 84.6
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 8.0e-59 233.4 162 73.5
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 2.6e-57 228.4 139 82.7
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 2.0e-54 218.8 130 86.9
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 9.5e-52 209.9 108 94.4
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 4.9e-48 197.6 129 74.4
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 1.6e-38 166.0 118 71.2
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 3.3e-36 158.3 169 53.8
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 4.3e-36 157.9 182 51.1
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 7.3e-36 157.1 85 87.1
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 7.3e-36 157.1 96 80.2
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 1.4e-34 152.9 103 71.8
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 3.4e-33 148.3 117 65.0
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 9.9e-33 146.7 86 80.2
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 5.4e-31 141.0 113 65.5
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 5.4e-31 141.0 87 74.7
SHI08886 Sapria himalayana HOM05D000002 ORTHO05D000001 2.5e-28 132.1 92 75.0
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 3.3e-28 131.7 86 75.6
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 5.6e-28 131.0 79 77.2
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 1.4e-26 126.3 79 73.4
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 2.4e-26 125.6 193 34.2
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 2.6e-25 122.1 89 71.9
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 7.1e-23 114.0 81 67.9
Prupe.5G231200 Prunus persica HOM05D003976 ORTHO05D004711 2.8e-19 102.1 100 58.0
Lalb_Chr21g0313561 Lupinus albus HOM05D003976 ORTHO05D004711 9.0e-18 97.1 84 66.7
Lalb_Chr21g0313691 Lupinus albus HOM05D003976 ORTHO05D004711 9.0e-18 97.1 84 66.7
vmacro16680 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 1.4e-15 89.7 62 71.0
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 1.4e-15 89.7 62 71.0
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 9.3e-15 87.0 71 62.0
Hma1.2p1_0384F.1_g140760 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 2.3e-13 82.4 49 79.6
Cc03_g09730 Coffea canephora HOM05D003976 ORTHO05D004711 5.6e-12 77.8 58 67.2
TPR.G6473 Trifolium pratense HOM05D003976 ORTHO05D004711 2.1e-11 75.9 48 79.2
HanXRQChr05g0134171 Helianthus annuus HOM05D003976 ORTHO05D004711 5.3e-10 71.2 52 71.2
Aa31LG6G7350 Aethionema arabicum HOM05D003976 ORTHO05D004711 1.2e-09 70.1 66 57.6
MBI18_g27470_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 2.7e-06 58.9 52 48.1


User provided reference genes

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