Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI15G0151 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 0.0e+00 1297.3 685 100.0
TWI60G1197 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 8.8e-277 956.8 686 75.2
TWI81G0716 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 3.7e-259 898.3 690 72.5
Ciclev10019089m.g Citrus clementina HOM05D003672 ORTHO05D004121 7.7e-148 528.5 715 48.0
Atru.chr9.577 Acer truncatum HOM05D003672 ORTHO05D004121 2.9e-147 526.6 709 47.8
Potri.015G057600 Populus trichocarpa HOM05D003672 ORTHO05D004121 1.1e-138 498.0 707 47.0
Thecc.03G101900 Theobroma cacao HOM05D003672 ORTHO05D004121 2.9e-134 483.4 703 45.5
Sabra15G0083600 Salix brachista HOM05D003672 ORTHO05D004121 8.3e-134 481.9 708 47.6
COL.COLO4_06856 Corchorus olitorius HOM05D003672 ORTHO05D004121 7.8e-132 475.3 715 45.6
QL10p019524 Quercus lobata HOM05D003672 ORTHO05D004121 1.9e-130 470.7 714 45.1
Prupe.5G205200 Prunus persica HOM05D003672 ORTHO05D004121 1.8e-128 464.2 724 46.1
Duzib205G1655 Durio zibethinus HOM05D003672 ORTHO05D004121 2.3e-128 463.8 712 43.7
Duzib084G0362 Durio zibethinus HOM05D003672 ORTHO05D004121 4.9e-126 456.1 711 44.3
Manes.14G085800 Manihot esculenta HOM05D003672 ORTHO05D004121 2.3e-123 447.2 686 44.3
Cfa019341 Carpinus fangiana HOM05D003672 ORTHO05D004121 8.6e-123 445.3 705 45.0
Dinv22781 Davidia involucrata HOM05D003672 ORTHO05D004121 4.7e-121 439.5 719 43.1
Manes.06G084700 Manihot esculenta HOM05D003672 ORTHO05D004121 4.6e-116 422.9 698 43.0
CANSAT80G1081 Cannabis sativa HOM05D003672 ORTHO05D004121 2.3e-115 420.6 716 42.5
Cpa.g.sc94.57 Carica papaya HOM05D003672 ORTHO05D004121 3.6e-113 413.3 702 41.6
Haze_07732 Corylus avellana HOM05D003672 ORTHO05D004121 1.4e-109 401.4 819 37.7
RcHm_v2.0_Chr7g0183101 Rosa chinensis HOM05D003672 ORTHO05D004121 1.2e-108 398.3 717 42.7
FvH4_5g13830 Fragaria vesca HOM05D003672 ORTHO05D004121 3.5e-108 396.7 748 40.6
Gohir.A07G068500 Gossypium hirsutum HOM05D003672 ORTHO05D004121 1.7e-107 394.4 697 41.5
FAN18G3332 Fragaria x ananassa HOM05D003672 ORTHO05D004121 2.3e-107 394.0 748 40.4
MD14G1212000 Malus domestica HOM05D003672 ORTHO05D004121 3.0e-107 393.7 790 39.4
Gorai.001G077200 Gossypium raimondii HOM05D003672 ORTHO05D004121 6.6e-107 392.5 697 40.9
Lj1g0027425 Lotus japonicus HOM05D003672 ORTHO05D004121 6.6e-107 392.5 713 41.1
Gohir.D07G073000 Gossypium hirsutum HOM05D003672 ORTHO05D004121 8.7e-107 392.1 697 40.9
FAN13G1740 Fragaria x ananassa HOM05D003672 ORTHO05D004121 1.6e-105 387.9 758 40.0
Gorai.008G199200 Gossypium raimondii HOM05D003672 ORTHO05D004121 2.2e-102 377.5 703 40.0
CiPaw.12G008500 Carya illinoinensis HOM05D003672 ORTHO05D004121 4.9e-102 376.3 714 40.5
FAN08G3423 Fragaria x ananassa HOM05D003672 ORTHO05D004121 3.2e-101 373.6 779 39.4
Gohir.A12G182700 Gossypium hirsutum HOM05D003672 ORTHO05D004121 2.7e-100 370.5 704 39.6
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 2.8e-97 360.5 708 40.7
Glyma.04G162600 Glycine max HOM05D003672 ORTHO05D004121 3.6e-97 360.1 719 40.3
TAR629G1848 Trochodendron aralioides HOM05D003672 ORTHO05D004121 1.1e-96 358.6 731 39.1
Lj5C102T25 Lonicera japonica HOM05D003672 ORTHO05D004121 3.4e-95 353.6 701 39.9
Nn4g23428 Nelumbo nucifera HOM05D003672 ORTHO05D004121 4.9e-94 349.7 726 39.0
Gohir.D12G185800 Gossypium hirsutum HOM05D003672 ORTHO05D004121 1.2e-92 345.1 604 40.9
TAR629G0952 Trochodendron aralioides HOM05D003672 ORTHO05D004121 3.5e-92 343.6 619 40.9
Nitab4.5_0009401g0050 Nicotiana tabacum HOM05D003672 ORTHO05D004121 1.0e-91 342.0 702 39.3
Actinidia18990 Actinidia chinensis HOM05D003672 ORTHO05D004121 1.8e-91 341.3 711 38.7
Glyma.06G203700 Glycine max HOM05D003672 ORTHO05D004121 3.9e-91 340.1 704 38.6
GSVIVG01007866001 Vitis vinifera HOM05D003672 ORTHO05D004121 5.1e-91 339.7 730 38.6
Solyc03g115100.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 7.4e-90 335.9 705 38.2
Sopen03g034170 Solanum pennellii HOM05D003672 ORTHO05D004121 9.6e-90 335.5 708 37.6
THA.LOC104819401 Tarenaya hassleriana HOM05D003672 ORTHO05D004121 1.6e-89 334.7 705 37.2
Nn3g17451 Nelumbo nucifera HOM05D003672 ORTHO05D004121 4.8e-89 333.2 728 37.8
Nitab4.5_0001485g0140 Nicotiana tabacum HOM05D003672 ORTHO05D004121 4.8e-89 333.2 692 37.9
Hma1.2p1_0060F.1_g033090 Hydrangea macrophylla HOM05D003672 ORTHO05D004121 4.0e-88 330.1 729 36.2
Actinidia35037 Actinidia chinensis HOM05D003672 ORTHO05D004121 2.6e-87 327.4 706 37.7
TPR.G12189 Trifolium pratense HOM05D003672 ORTHO05D004121 3.4e-87 327.0 725 37.1
Ca_14345_v3 Cicer arietinum L. HOM05D003672 ORTHO05D004121 5.8e-87 326.2 743 35.5
Phvul.010G007200 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 1.4e-85 321.6 696 39.5
Rhsim12G0148200 Rhododendron simsii HOM05D003672 ORTHO05D004121 1.9e-85 321.2 714 37.1
Peaxi162Scf00201g00329 Petunia axillaris HOM05D003672 ORTHO05D004121 1.6e-84 318.2 696 35.5
PGSC0003DMG400024637 Solanum tuberosum HOM05D003672 ORTHO05D004121 1.6e-84 318.2 709 37.8
arahy.Tifrunner.gnm1.ann1.SKH1UB Arachis hypogaea HOM05D003672 ORTHO05D004121 1.3e-83 315.1 713 35.6
arahy.Tifrunner.gnm1.ann1.N0JE3Z Arachis hypogaea HOM05D003672 ORTHO05D004121 5.7e-82 309.7 713 35.5
Lalb_Chr13g0302861 Lupinus albus HOM05D003672 ORTHO05D004121 7.4e-82 309.3 697 37.9
Sed0002350 Sechium edule HOM05D003672 ORTHO05D004121 8.2e-81 305.8 703 35.7
vmacro16495 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 4.0e-80 303.5 719 37.3
Cc00_g14840 Coffea canephora HOM05D003672 ORTHO05D004121 5.3e-80 303.1 706 36.1
Dinv17414 Davidia involucrata HOM05D003672 ORTHO05D004121 5.3e-80 303.1 711 35.3
Eucgr.B00592 Eucalyptus grandis HOM05D003672 ORTHO05D004121 9.0e-80 302.4 703 35.7
CiPaw.11G053900 Carya illinoinensis HOM05D003672 ORTHO05D004121 2.2e-78 297.7 525 43.6
VMungo0331G1159 Vigna mungo HOM05D003672 ORTHO05D004121 2.2e-78 297.7 698 37.5
arahy.Tifrunner.gnm1.ann1.03S8MC Arachis hypogaea HOM05D003672 ORTHO05D004121 5.0e-78 296.6 715 35.4
SalBow7G3172 Salvia bowleyana HOM05D003672 ORTHO05D004121 5.0e-78 296.6 722 36.1
arahy.Tifrunner.gnm1.ann1.R6LVKU Arachis hypogaea HOM05D003672 ORTHO05D004121 1.9e-77 294.7 715 36.1
Medtr3g025870 Medicago truncatula HOM05D003672 ORTHO05D004121 4.2e-77 293.5 716 35.5
Dinv34068 Davidia involucrata HOM05D003672 ORTHO05D004121 2.7e-76 290.8 720 37.1
Oeu061164.2 Olea europaea HOM05D003672 ORTHO05D004121 1.3e-75 288.5 734 34.5
MELO3C017225.2 Cucumis melo HOM05D003672 ORTHO05D004121 1.8e-75 288.1 748 34.0
Glyma.05G021000 Glycine max HOM05D003672 ORTHO05D004121 9.7e-74 282.3 705 36.2
Psat2g037720 Pisum sativum HOM05D003672 ORTHO05D004121 2.2e-73 281.2 694 35.0
AT5G61040 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 2.8e-73 280.8 701 35.7
Lalb_Chr07g0178301 Lupinus albus HOM05D003672 ORTHO05D004121 1.1e-72 278.9 672 38.7
Sp2g24340 Schrenkiella parvula HOM05D003672 ORTHO05D004121 4.1e-72 276.9 701 34.8
MSTRG.22965 Avicennia marina HOM05D003672 ORTHO05D004121 6.9e-72 276.2 695 32.9
PSO478G1233 Papaver somniferum HOM05D003672 ORTHO05D004121 6.9e-72 276.2 598 39.0
Oeu044870.1 Olea europaea HOM05D003672 ORTHO05D004121 9.0e-72 275.8 696 34.2
PGR083G2392 Punica granatum HOM05D003672 ORTHO05D004121 1.2e-71 275.4 695 34.5
ClCG06G015630 Citrullus lanatus HOM05D003672 ORTHO05D004121 7.7e-71 272.7 697 34.1
AL8G37700 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 2.2e-70 271.2 703 34.7
GSVIVG01012221001 Vitis vinifera HOM05D003672 ORTHO05D004121 3.8e-70 270.4 700 32.9
Carub.0008s2173 Capsella rubella HOM05D003672 ORTHO05D004121 1.9e-69 268.1 703 32.7
Aqoxy1G00151 Aquilegia oxysepala HOM05D003672 ORTHO05D004121 3.2e-69 267.3 723 36.5
Migut.D01656 Erythranthe guttata HOM05D003672 ORTHO05D004121 4.2e-69 266.9 708 33.8
PSO017G3206 Papaver somniferum HOM05D003672 ORTHO05D004121 7.2e-69 266.2 594 38.4
Thhalv10003875m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 9.4e-69 265.8 703 34.1
DCAR_023172 Daucus carota HOM05D003672 ORTHO05D004121 6.1e-68 263.1 707 32.7
CsaV3_1G002930 Cucumis sativus L. HOM05D003672 ORTHO05D004121 1.0e-67 262.3 700 33.3
BraA03t13796Z Brassica rapa HOM05D003672 ORTHO05D004121 3.7e-65 253.8 703 33.7
EL10Ac5g11131 Beta vulgaris HOM05D003672 ORTHO05D004121 9.1e-64 249.2 698 33.8
BolC7t45002H Brassica oleracea HOM05D003672 ORTHO05D004121 1.7e-62 245.0 701 32.8
MBI16_g38067_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 6.5e-62 243.0 740 31.2
AUR62008531 Chenopodium quinoa HOM05D003672 ORTHO05D004121 8.5e-62 242.7 700 32.6
BcaC06g33181 Brassica carinata HOM05D003672 ORTHO05D004121 1.4e-61 241.9 695 31.5
CSS0037619 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D004121 1.4e-61 241.9 707 34.5
Aa31LG3G18520 Aethionema arabicum HOM05D003672 ORTHO05D004121 5.5e-61 240.0 691 33.0
Carub.0006s0690 Capsella rubella HOM05D003672 ORTHO05D004121 7.2e-61 239.6 692 32.4
Thhalv10013089m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 7.2e-61 239.6 696 33.8
AL6G18360 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 1.2e-60 238.8 701 33.2
CARHR274750 Cardamine hirsuta HOM05D003672 ORTHO05D004121 2.7e-60 237.7 580 33.4
AUR62021559 Chenopodium quinoa HOM05D003672 ORTHO05D004121 1.0e-59 235.7 708 32.9
AT5G08010 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 5.1e-59 233.4 699 32.3
C07p44780 Brassica napus HOM05D003672 ORTHO05D004121 1.1e-58 232.3 694 31.3
Ah.02g114040 Amaranthus hybridus HOM05D003672 ORTHO05D004121 1.7e-57 228.4 702 32.2
Actinidia31938 Actinidia chinensis HOM05D003672 ORTHO05D004121 4.8e-57 226.9 611 34.0
Lj5A435T21 Lonicera japonica HOM05D003672 ORTHO05D004121 1.1e-56 225.7 713 31.0
CARHR205170 Cardamine hirsuta HOM05D003672 ORTHO05D004121 2.4e-56 224.6 701 32.8
Hund02585 Selenicereus undatus HOM05D003672 ORTHO05D004121 2.4e-56 224.6 697 32.3
Phvul.003G184800 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 5.3e-56 223.4 528 38.1
Hund09914 Selenicereus undatus HOM05D003672 ORTHO05D004121 2.6e-55 221.1 693 31.7
A03p46740 Brassica napus HOM05D003672 ORTHO05D004121 3.8e-54 217.2 701 31.1
A10p28610 Brassica napus HOM05D003672 ORTHO05D004121 1.6e-52 211.8 689 29.8
CAN.G3169.1 Capsicum annuum HOM05D002946 ORTHO05D003299 2.1e-52 211.5 409 39.6
Lj4g0018287 Lotus japonicus HOM05D003672 ORTHO05D004121 2.1e-52 211.5 387 40.8
BraA10t44910Z Brassica rapa HOM05D003672 ORTHO05D004121 1.5e-50 205.3 685 29.6
Sp6g34930 Schrenkiella parvula HOM05D003672 ORTHO05D004121 4.4e-50 203.8 698 31.7
C09p68900 Brassica napus HOM05D003672 ORTHO05D004121 9.1e-48 196.1 690 30.7
CAN.G1228.24 Capsicum annuum HOM05D003672 ORTHO05D004121 2.0e-47 194.9 385 39.0
QL03p074101 Quercus lobata HOM05D003672 ORTHO05D004121 2.9e-46 191.0 530 34.5
BolC9t59636H Brassica oleracea HOM05D003672 ORTHO05D004121 5.0e-46 190.3 690 30.4
Aa31LG11G2260 Aethionema arabicum HOM05D003672 ORTHO05D004121 6.5e-46 189.9 690 30.6
CsaV3_1G005970 Cucumis sativus L. HOM05D003672 ORTHO05D004121 4.2e-45 187.2 534 33.1
SGA_v2.0_scaffold25G10960 Striga asiatica HOM05D003672 ORTHO05D004121 2.1e-44 184.9 603 28.9
Rhsim12G0075200 Rhododendron simsii HOM05D003672 ORTHO05D004121 3.6e-44 184.1 784 29.0
MELO3C002028.2 Cucumis melo HOM05D003672 ORTHO05D004121 8.0e-44 183.0 518 33.0
CAN.G1228.26 Capsicum annuum HOM05D003672 ORTHO05D004121 1.3e-41 175.6 463 34.3
Rhsim12G0074700 Rhododendron simsii HOM05D003672 ORTHO05D004121 1.7e-41 175.3 788 28.7
Sed0025785 Sechium edule HOM05D003672 ORTHO05D004121 1.7e-41 175.3 538 31.2
BcaB08g37298 Brassica carinata HOM05D003672 ORTHO05D004121 4.8e-41 173.7 410 35.9
Haze_11907 Corylus avellana HOM05D003672 ORTHO05D004121 4.8e-41 173.7 539 32.8
ClCG04G011810 Citrullus lanatus HOM05D003672 ORTHO05D004121 1.1e-40 172.6 540 31.5
Sc12g0007260 Simmondsia chinensis HOM05D003672 ORTHO05D004121 1.4e-40 172.2 446 31.4
ECA232G2426 Erigeron canadensis HOM05D003672 ORTHO05D004121 1.3e-38 165.6 685 28.6
CANSAT39G0004 Cannabis sativa HOM05D003672 ORTHO05D004121 3.8e-38 164.1 220 49.5
VMungo1215G2632 Vigna mungo HOM05D003672 ORTHO05D004121 1.5e-37 162.2 438 33.6
Os12g0576300 Oryza sativa ssp. japonica HOM05D003672 ORTHO05D004121 2.5e-37 161.4 555 28.5
HanXRQChr16g0502451 Helianthus annuus HOM05D003672 ORTHO05D004121 1.8e-35 155.2 688 25.4
Zm00001eb029540 Zea mays HOM05D003672 ORTHO05D004121 3.0e-35 154.5 547 30.2
ATR0177G058 Amborella trichopoda HOM05D003672 ORTHO05D004121 4.0e-35 154.1 408 32.8
Ah.11g047770 Amaranthus hybridus HOM05D003672 ORTHO05D004121 8.8e-35 152.9 752 27.4
HanXRQChr09g0270231 Helianthus annuus HOM05D003672 ORTHO05D004121 4.9e-33 147.1 678 27.6
HPP92_007830 Vanilla planifolia HOM05D003672 ORTHO05D004121 2.0e-31 141.7 598 29.8
QL03p074186 Quercus lobata HOM05D003672 ORTHO05D004121 3.8e-30 137.5 533 31.3
Zm00001eb136280 Zea mays HOM05D003672 ORTHO05D004121 1.9e-29 135.2 397 32.7
Cc11_g11950 Coffea canephora HOM05D003672 ORTHO05D004121 3.6e-28 131.0 546 28.8
BcaB08g37300 Brassica carinata HOM05D003672 ORTHO05D004121 6.1e-28 130.2 266 37.6
Lsat_1_v5_gn_4_111040 Lactuca sativa HOM05D003672 ORTHO05D004121 1.0e-27 129.4 286 35.7
MBI16_g36263_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 3.0e-27 127.9 560 27.0
Potri.008G096100 Populus trichocarpa HOM05D003672 ORTHO05D004121 1.5e-26 125.6 280 37.1
Eucgr.B03149 Eucalyptus grandis HOM05D003672 ORTHO05D004121 2.6e-26 124.8 618 27.5
CiPaw.05G125000 Carya illinoinensis HOM05D003672 ORTHO05D004121 5.7e-26 123.6 601 27.5
vmacro01315 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 9.8e-26 122.9 719 25.2
SEGI_35614 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 1.7e-25 122.1 559 26.1
Sabra08G0072400 Salix brachista HOM05D003672 ORTHO05D004121 2.2e-25 121.7 255 37.6
VMungo1215G3071 Vigna mungo HOM05D003672 ORTHO05D004121 4.9e-25 120.6 268 37.3
PGR102G2240 Punica granatum HOM05D003672 ORTHO05D004121 8.3e-25 119.8 536 28.7
Atru.chr11.1624 Acer truncatum HOM05D003672 ORTHO05D004121 1.2e-23 115.9 253 37.9
SEGI_10408 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 1.6e-23 115.5 529 25.7
HPP92_000460 Vanilla planifolia HOM05D003672 ORTHO05D004121 2.7e-23 114.8 380 30.5
Oeu004585.2 Olea europaea HOM05D003672 ORTHO05D004121 8.6e-22 109.8 538 27.3
Nitab4.5_0000231g0260 Nicotiana tabacum HOM05D003672 ORTHO05D004121 5.6e-21 107.1 257 31.5
Solyc05g012230.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 1.6e-20 105.5 259 31.7
Sopen05g007060 Solanum pennellii HOM05D003672 ORTHO05D004121 2.1e-20 105.1 291 33.0
unitig_749.g13432 Utricularia gibba HOM05D003672 ORTHO05D004121 4.7e-20 104.0 398 28.4
CDE04G0191 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 6.2e-20 103.6 332 30.1
PGSC0003DMG400028369 Solanum tuberosum HOM05D003672 ORTHO05D004121 8.0e-20 103.2 240 35.0
Manes.01G028000 Manihot esculenta HOM05D003672 ORTHO05D004121 1.0e-19 102.8 296 33.4
Ciclev10033781m.g Citrus clementina HOM05D003672 ORTHO05D004121 2.3e-19 101.7 235 33.6
Peaxi162Scf00175g00022 Petunia axillaris HOM05D003672 ORTHO05D004121 2.3e-19 101.7 294 28.6
Nitab4.5_0009585g0010 Nicotiana tabacum HOM05D003672 ORTHO05D004121 5.8e-18 97.1 247 34.8
CDE07G1307 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 2.2e-17 95.1 590 23.7
SalBow2G2767 Salvia bowleyana HOM05D003672 ORTHO05D004121 1.3e-14 85.9 278 30.6
HanXRQChr12g0363081 Helianthus annuus HOM05D003672 ORTHO05D004121 1.4e-11 75.9 251 29.9
ECA233G1662 Erigeron canadensis HOM05D000677 ORTHO05D000727 4.0e-11 74.3 261 30.7
Lsat_1_v5_gn_8_46340 Lactuca sativa HOM05D003672 ORTHO05D004121 9.8e-10 69.7 255 27.8
Migut.L01189 Erythranthe guttata HOM05D003672 ORTHO05D004121 1.9e-08 65.5 316 29.1
Actinidia19914 Actinidia chinensis HOM05D000020 ORTHO05D000156 4.1e-08 64.3 116 37.1
MD00G1005400 Malus domestica HOM05D003672 ORTHO05D004121 3.9e-06 57.8 71 50.7
Peaxi162Scf00195g00412 Petunia axillaris HOM05D005497 ORTHO05D006733 8.6e-06 56.6 224 25.0


User provided reference genes

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