Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI15G0139 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 1.4e-226 789.3 408 100.0
TWI15G0397 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 1.3e-187 659.8 408 87.5
Thecc.03G261400 Theobroma cacao HOM05D005292 ORTHO05D006473 1.3e-174 616.7 409 77.5
Duzib084G0213 Durio zibethinus HOM05D005292 ORTHO05D006473 1.9e-170 602.8 409 72.9
Potri.001G118000 Populus trichocarpa HOM05D005292 ORTHO05D006473 2.8e-169 599.0 397 77.8
CANSAT80G2034 Cannabis sativa HOM05D005292 ORTHO05D006473 1.2e-167 593.6 405 73.3
Cpa.g.sc29.95 Carica papaya HOM05D005292 ORTHO05D006473 2.6e-167 592.4 396 74.2
Manes.02G033900 Manihot esculenta HOM05D005292 ORTHO05D006473 2.6e-167 592.4 406 76.6
GSVIVG01004916001 Vitis vinifera HOM05D005292 ORTHO05D006473 2.6e-167 592.4 367 79.0
COL.COLO4_31983 Corchorus olitorius HOM05D005292 ORTHO05D006473 2.2e-166 589.3 409 72.1
Ciclev10020454m.g Citrus clementina HOM05D005292 ORTHO05D006473 3.8e-166 588.6 406 72.7
QL12p014915 Quercus lobata HOM05D005292 ORTHO05D006473 7.1e-165 584.3 406 71.9
Atru.chr9.1428 Acer truncatum HOM05D005292 ORTHO05D006473 4.6e-164 581.6 382 75.7
CiPaw.11G147800 Carya illinoinensis HOM05D005292 ORTHO05D006473 1.3e-163 580.1 405 71.4
CSS0004035 Camellia sinensis var. sinensis HOM05D005292 ORTHO05D006473 3.0e-163 578.9 419 70.4
MD04G1079900 Malus domestica HOM05D005292 ORTHO05D006473 3.9e-163 578.6 398 72.4
Cfa012803 Carpinus fangiana HOM05D005292 ORTHO05D006473 1.5e-162 576.6 408 71.1
Gohir.A03G012000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 3.6e-161 572.0 408 72.1
Gohir.D03G157800 Gossypium hirsutum HOM05D005292 ORTHO05D006473 6.2e-161 571.2 408 70.3
Gorai.007G021400 Gossypium raimondii HOM05D005292 ORTHO05D006473 9.0e-160 567.4 410 72.7
Gohir.D12G223000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 2.6e-159 565.8 406 70.4
Lj4g0005126 Lotus japonicus HOM05D005292 ORTHO05D006473 9.9e-159 563.9 409 69.2
Gohir.A11G020400 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.7e-158 563.1 409 72.9
Dinv21573 Davidia involucrata HOM05D005292 ORTHO05D006473 2.2e-158 562.8 410 72.9
Gorai.003G166300 Gossypium raimondii HOM05D005292 ORTHO05D006473 4.9e-158 561.6 408 71.3
THA.LOC104813867 Tarenaya hassleriana HOM05D005292 ORTHO05D006473 1.4e-157 560.1 296 88.2
Ca_12278_v3 Cicer arietinum L. HOM05D005292 ORTHO05D006473 3.2e-157 558.9 403 72.2
Prupe.5G079200 Prunus persica HOM05D005292 ORTHO05D006473 3.2e-157 558.9 348 78.7
CiPaw.12G105300 Carya illinoinensis HOM05D005292 ORTHO05D006473 4.2e-157 558.5 353 80.5
TPR.G37684 Trifolium pratense HOM05D005292 ORTHO05D006473 1.2e-156 557.0 412 71.8
Gohir.D11G020100 Gossypium hirsutum HOM05D005292 ORTHO05D006473 2.1e-156 556.2 409 72.1
Sed0004099 Sechium edule HOM05D005292 ORTHO05D006473 2.1e-156 556.2 352 76.7
Gorai.008G239300 Gossypium raimondii HOM05D005292 ORTHO05D006473 3.5e-156 555.4 431 66.6
Potri.003G114900 Populus trichocarpa HOM05D005292 ORTHO05D006473 1.0e-155 553.9 296 88.2
VMungo1215G1740 Vigna mungo HOM05D005292 ORTHO05D006473 1.3e-155 553.5 409 69.9
Glyma.05G052500 Glycine max HOM05D005292 ORTHO05D006473 1.7e-155 553.1 410 68.8
Phvul.003G214500 Phaseolus vulgaris HOM05D005292 ORTHO05D006473 2.5e-154 549.3 414 68.1
Medtr4g102260 Medicago truncatula HOM05D005292 ORTHO05D006473 3.3e-154 548.9 413 70.2
Glyma.17G134700 Glycine max HOM05D005292 ORTHO05D006473 4.3e-154 548.5 346 78.3
Sabra01G0090700 Salix brachista HOM05D005292 ORTHO05D006473 9.6e-154 547.4 493 63.9
arahy.Tifrunner.gnm1.ann1.VS5X7Y Arachis hypogaea HOM05D005292 ORTHO05D006473 1.6e-153 546.6 408 67.9
RcHm_v2.0_Chr7g0201621 Rosa chinensis HOM05D005292 ORTHO05D006473 2.1e-153 546.2 401 73.8
Oeu016513.1 Olea europaea HOM05D005292 ORTHO05D006473 2.8e-153 545.8 408 68.6
TAR636G1323 Trochodendron aralioides HOM05D005292 ORTHO05D006473 2.8e-153 545.8 349 77.1
Nn1g01261 Nelumbo nucifera HOM05D005292 ORTHO05D006473 4.8e-153 545.0 352 74.4
MSTRG.12063 Avicennia marina HOM05D005292 ORTHO05D006473 1.4e-152 543.5 386 71.0
Actinidia02093 Actinidia chinensis HOM05D005292 ORTHO05D006473 1.8e-152 543.1 412 69.4
FAN04G0899 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.8e-152 543.1 411 72.0
Aqoxy7G00654 Aquilegia oxysepala HOM05D005292 ORTHO05D006473 2.4e-152 542.7 339 82.9
arahy.Tifrunner.gnm1.ann1.YRMJ3W Arachis hypogaea HOM05D005292 ORTHO05D006473 2.4e-152 542.7 397 69.5
FAN18G3339 Fragaria x ananassa HOM05D005292 ORTHO05D006473 2.4e-152 542.7 411 72.5
FAN08G1347 Fragaria x ananassa HOM05D005292 ORTHO05D006473 3.1e-152 542.3 407 73.0
Lalb_Chr05g0225431 Lupinus albus HOM05D005292 ORTHO05D006473 3.1e-152 542.3 400 69.2
AL6G47090 Arabidopsis lyrata HOM05D005292 ORTHO05D006473 4.0e-152 542.0 299 85.3
Eucgr.D01991 Eucalyptus grandis HOM05D005292 ORTHO05D006473 5.3e-152 541.6 339 79.4
CsaV3_5G003780 Cucumis sativus L. HOM05D005292 ORTHO05D006473 6.9e-152 541.2 355 78.0
Psat4g068120 Pisum sativum HOM05D005292 ORTHO05D006473 6.9e-152 541.2 413 70.5
CAN.G630.87 Capsicum annuum HOM05D005292 ORTHO05D006473 1.2e-151 540.4 348 74.4
FAN13G3324 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.5e-151 540.0 411 72.0
Sp6g05330 Schrenkiella parvula HOM05D005292 ORTHO05D006473 2.0e-151 539.7 292 86.6
Thhalv10028717m.g Eutrema salsugineum HOM05D005292 ORTHO05D006473 2.6e-151 539.3 336 81.2
Peaxi162Scf00271g00021 Petunia axillaris HOM05D005292 ORTHO05D006473 3.4e-151 538.9 347 75.2
PGR031G2306 Punica granatum HOM05D005292 ORTHO05D006473 3.4e-151 538.9 283 89.4
PGSC0003DMG400003959 Solanum tuberosum HOM05D005292 ORTHO05D006473 5.8e-151 538.1 346 79.5
Lj8A255T56 Lonicera japonica HOM05D005292 ORTHO05D006473 7.6e-151 537.7 300 85.3
Nitab4.5_0003534g0020 Nicotiana tabacum HOM05D005292 ORTHO05D006473 7.6e-151 537.7 346 77.2
Carub.0006s3135 Capsella rubella HOM05D005292 ORTHO05D006473 9.9e-151 537.3 301 84.1
CARHR254020 Cardamine hirsuta HOM05D005292 ORTHO05D006473 9.9e-151 537.3 292 85.6
AT4G12230 Arabidopsis thaliana HOM05D005292 ORTHO05D006473 1.7e-150 536.6 299 84.3
Cc08_g13210 Coffea canephora HOM05D005292 ORTHO05D006473 2.9e-150 535.8 345 78.6
BcaB01g02654 Brassica carinata HOM05D005292 ORTHO05D006473 6.4e-150 534.6 289 86.2
Sopen08g027820 Solanum pennellii HOM05D005292 ORTHO05D006473 6.4e-150 534.6 346 74.9
BcaC01g04601 Brassica carinata HOM05D005292 ORTHO05D006473 1.4e-149 533.5 289 86.2
Solyc08g079450.3 Solanum lycopersicum HOM05D005292 ORTHO05D006473 4.2e-149 531.9 346 74.6
MBI12_g31646_MAGBIO Magnolia biondii HOM05D005292 ORTHO05D006473 5.4e-149 531.6 350 78.3
A03p29600 Brassica napus HOM05D005292 ORTHO05D006473 7.1e-149 531.2 289 86.2
PSO782G2032 Papaver somniferum HOM05D005292 ORTHO05D006473 9.3e-149 530.8 298 83.9
BraA03t12155Z Brassica rapa HOM05D005292 ORTHO05D006473 1.6e-148 530.0 289 85.8
C03p35880 Brassica napus HOM05D005292 ORTHO05D006473 3.5e-148 528.9 290 85.9
BolC3t15896H Brassica oleracea HOM05D005292 ORTHO05D006473 3.5e-148 528.9 290 85.9
Sc22g0000600 Simmondsia chinensis HOM05D005292 ORTHO05D006473 3.5e-148 528.9 295 83.1
EL10Ac5g12610 Beta vulgaris HOM05D005292 ORTHO05D006473 6.0e-148 528.1 297 82.8
ECA233G3282 Erigeron canadensis HOM05D005292 ORTHO05D006473 7.9e-148 527.7 405 68.9
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 3.9e-147 525.4 355 76.1
Migut.A00832 Erythranthe guttata HOM05D005292 ORTHO05D006473 3.9e-147 525.4 361 76.7
Hund14648 Selenicereus undatus HOM05D005292 ORTHO05D006473 5.1e-147 525.0 296 83.8
Hma1.2p1_0367F.1_g137040 Hydrangea macrophylla HOM05D005292 ORTHO05D006473 8.7e-147 524.2 346 74.3
PSO478G4449 Papaver somniferum HOM05D005292 ORTHO05D006473 1.9e-146 523.1 290 84.8
Dinv39082 Davidia involucrata HOM05D005292 ORTHO05D006473 3.3e-146 522.3 411 65.9
Nitab4.5_0007591g0040 Nicotiana tabacum HOM05D005292 ORTHO05D006473 1.3e-145 520.4 346 77.7
DCAR_006803 Daucus carota HOM05D005292 ORTHO05D006473 1.6e-145 520.0 290 84.8
AUR62010507 Chenopodium quinoa HOM05D005292 ORTHO05D006473 4.8e-145 518.5 291 82.1
CDE09G1063 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 1.2e-143 513.8 361 68.4
SalBow1G6483 Salvia bowleyana HOM05D005292 ORTHO05D006473 1.2e-143 513.8 318 77.0
SGA_v2.0_scaffold120G32820 Striga asiatica HOM05D005292 ORTHO05D006473 7.6e-143 511.1 432 62.7
HanXRQChr02g0046251 Helianthus annuus HOM05D005292 ORTHO05D006473 1.3e-142 510.4 292 82.9
Gohir.A12G220700 Gossypium hirsutum HOM05D005292 ORTHO05D006473 8.4e-142 507.7 309 79.6
ClCG01G003660 Citrullus lanatus HOM05D005292 ORTHO05D006473 2.5e-141 506.1 398 66.1
Os10g0169800 Oryza sativa ssp. japonica HOM05D005292 ORTHO05D006473 5.5e-141 505.0 335 71.3
Zm00001eb026990 Zea mays HOM05D005292 ORTHO05D006473 2.3e-139 499.6 299 77.9
vmacro14043 Vaccinium macrocarpon HOM05D005292 ORTHO05D006473 3.0e-139 499.2 398 64.1
Ah.12g058260 Amaranthus hybridus HOM05D005292 ORTHO05D006473 5.1e-139 498.4 318 75.2
HanXRQChr07g0188671 Helianthus annuus HOM05D005292 ORTHO05D006473 5.1e-139 498.4 347 72.0
Ah.02g116220 Amaranthus hybridus HOM05D005292 ORTHO05D006473 7.6e-135 484.6 266 83.8
Haze_08610 Corylus avellana HOM05D005292 ORTHO05D006473 1.3e-134 483.8 405 63.7
unitig_744.g24320 Utricularia gibba HOM05D005292 ORTHO05D006473 7.1e-133 478.0 316 71.5
Nn4g26373 Nelumbo nucifera HOM05D005292 ORTHO05D006473 2.1e-132 476.5 358 66.8
Lsat_1_v5_gn_6_9841 Lactuca sativa HOM05D005292 ORTHO05D006473 3.5e-132 475.7 265 84.9
ATR0757G031 Amborella trichopoda HOM05D005292 ORTHO05D006473 8.7e-131 471.1 281 79.4
AUR62017394 Chenopodium quinoa HOM05D005292 ORTHO05D006473 1.9e-130 469.9 270 80.7
CDE11G0205 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 9.7e-130 467.6 327 69.1
HPP92_014608 Vanilla planifolia HOM05D005292 ORTHO05D006473 1.2e-127 460.7 271 80.1
FvH4_5g00640 Fragaria vesca HOM05D005292 ORTHO05D006473 1.0e-115 421.0 347 69.7
SEGI_16146 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 2.3e-115 419.9 346 59.2
Pp3c6_20320 Physcomitrium patens HOM05D005292 ORTHO05D006473 6.7e-115 418.3 279 69.5
Rhsim07G0101700 Rhododendron simsii HOM05D005292 ORTHO05D006473 2.6e-114 416.4 307 67.1
Sabra03G0079600 Salix brachista HOM05D005292 ORTHO05D006473 2.6e-114 416.4 219 89.5
Duzib205G1434 Durio zibethinus HOM05D005292 ORTHO05D006473 4.1e-112 409.1 409 56.2
Mapoly0066s0051 Marchantia polymorpha HOM05D005292 ORTHO05D006473 9.1e-112 407.9 270 70.0
SMO223G0031 Selaginella moellendorffii HOM05D005292 ORTHO05D006473 1.4e-109 400.6 274 66.8
AagrBONN_evm.TU.Sc2ySwM_368.248 Anthoceros agrestis HOM05D005292 ORTHO05D006473 5.2e-107 392.1 290 64.5
Actinidia14462 Actinidia chinensis HOM05D005292 ORTHO05D006473 2.8e-97 359.8 398 53.3
TAR629G1108 Trochodendron aralioides HOM05D005292 ORTHO05D006473 4.8e-97 359.0 183 88.5
Oeu022319.3 Olea europaea HOM05D005292 ORTHO05D006473 2.0e-95 353.6 411 50.4
Aa31LG11G5120 Aethionema arabicum HOM05D005292 ORTHO05D006473 7.3e-77 292.0 155 84.5
Dinv37766 Davidia involucrata HOM05D005292 ORTHO05D006473 8.9e-75 285.0 269 63.9
MD06G1074900 Malus domestica HOM05D005292 ORTHO05D006473 3.7e-73 279.6 147 85.7
Lsat_1_v5_gn_8_156781 Lactuca sativa HOM05D005292 ORTHO05D006473 2.1e-47 194.1 173 62.4
MELO3C005579.2 Cucumis melo HOM05D005292 ORTHO05D006473 1.7e-46 191.0 168 67.9
Lsat_1_v5_gn_8_88300 Lactuca sativa HOM05D005292 ORTHO05D006473 2.4e-43 180.6 216 47.7
Lsat_1_v5_gn_2_99060 Lactuca sativa HOM05D005292 ORTHO05D006473 6.9e-43 179.1 120 75.8
SEGI_25328 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 8.1e-36 155.6 94 70.2
Lsat_1_v5_gn_8_99640 Lactuca sativa HOM05D005292 ORTHO05D006473 1.8e-35 154.5 161 52.8
TAR636G3691 Trochodendron aralioides HOM05D005292 ORTHO05D006473 1.1e-32 145.2 132 58.3
Cc08_g13200 Coffea canephora HOM05D005292 ORTHO05D006473 3.3e-29 133.7 66 89.4
SEGI_08273 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 5.6e-29 132.9 84 76.2
CDE11G1060 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 1.2e-26 125.2 66 81.8
MD06G1074800 Malus domestica HOM05D005292 ORTHO05D006473 1.2e-26 125.2 72 86.1
Glyma.05G052200 Glycine max HOM05D005292 ORTHO05D006473 5.8e-26 122.9 146 48.6
TWI81G0363 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 7.9e-23 112.5 71 78.9
SEGI_15988 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 2.3e-22 110.9 65 76.9
Eucgr.C02046 Eucalyptus grandis HOM05D005292 ORTHO05D006473 8.4e-17 92.4 66 66.7
vmacro17465 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 5.7e-13 79.7 42 81.0
Peaxi162Scf00102g01237 Petunia axillaris HOM05D000023 ORTHO05D013611 3.0e-06 57.4 48 54.2


User provided reference genes

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